Wall clock time and date at job start Tue Mar 31 2020 12:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53001 * 109.46861 * 119.99471 * 2 1 3 5 5 C 1.52994 * 109.47265 * 239.99481 * 2 1 3 6 6 H 1.08991 * 109.47106 * 294.25690 * 5 2 1 7 7 C 1.52999 * 109.47071 * 54.25907 * 5 2 1 8 8 O 1.42899 * 109.47020 * 58.35596 * 7 5 2 9 9 N 1.46504 * 109.47058 * 174.25818 * 5 2 1 10 10 C 1.34774 * 120.00047 * 155.00316 * 9 5 2 11 11 O 1.21277 * 119.99832 * 359.97438 * 10 9 5 12 12 C 1.50697 * 120.00013 * 179.97438 * 10 9 5 13 13 C 1.53009 * 109.47221 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46854 * 306.02654 * 13 12 10 15 15 C 1.50700 * 109.46667 * 66.02263 * 13 12 10 16 16 H 1.08002 * 120.00240 * 35.41102 * 15 13 12 17 17 C 1.37880 * 120.00098 * 215.40946 * 15 13 12 18 18 N 1.31511 * 120.00504 * 186.03542 * 17 15 13 19 19 Si 1.86803 * 119.99598 * 6.03994 * 17 15 13 20 20 H 1.48504 * 109.47083 * 94.47286 * 19 17 15 21 21 H 1.48501 * 109.46987 * 214.47426 * 19 17 15 22 22 H 1.48497 * 109.47305 * 334.47357 * 19 17 15 23 23 C 1.50695 * 109.47214 * 186.02160 * 13 12 10 24 24 C 1.38237 * 119.99895 * 302.94614 * 23 13 12 25 25 C 1.38239 * 120.00031 * 179.78568 * 24 23 13 26 26 C 1.38237 * 119.99442 * 0.45230 * 25 24 23 27 27 C 1.38234 * 120.00377 * 359.80243 * 26 25 24 28 28 C 1.38232 * 120.00122 * 123.22818 * 23 13 12 29 29 H 1.08995 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00298 * 1 2 3 31 31 H 1.09003 * 109.47395 * 300.00405 * 1 2 3 32 32 H 1.09001 * 109.47633 * 70.59624 * 3 2 1 33 33 H 1.09005 * 109.46923 * 190.59490 * 3 2 1 34 34 H 1.09004 * 109.46841 * 310.59294 * 3 2 1 35 35 H 1.09005 * 109.46983 * 60.00155 * 4 2 1 36 36 H 1.09006 * 109.47089 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.47403 * 300.00000 * 4 2 1 38 38 H 1.09006 * 109.47448 * 178.35439 * 7 5 2 39 39 H 1.08999 * 109.47030 * 298.35654 * 7 5 2 40 40 H 0.96709 * 113.99692 * 180.02562 * 8 7 5 41 41 H 0.97002 * 120.00115 * 334.99502 * 9 5 2 42 42 H 1.08996 * 109.47830 * 299.99936 * 12 10 9 43 43 H 1.09002 * 109.47305 * 60.00378 * 12 10 9 44 44 H 0.96997 * 120.00021 * 179.97438 * 18 17 15 45 45 H 1.08001 * 120.00175 * 0.02562 * 24 23 13 46 46 H 1.07997 * 120.00257 * 180.27972 * 25 24 23 47 47 H 1.08000 * 119.99569 * 179.83167 * 26 25 24 48 48 H 1.07996 * 119.99894 * 180.02562 * 27 26 25 49 49 H 1.07995 * 120.00034 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.7631 -1.7743 -1.1991 7 6 1.4156 -0.0883 -2.4942 8 8 1.7470 1.3010 -2.5394 9 7 3.4985 -0.6028 -1.3202 10 6 4.2176 -1.5243 -1.9911 11 8 3.6573 -2.4518 -2.5357 12 6 5.7178 -1.4020 -2.0647 13 6 6.2852 -2.5674 -2.8777 14 1 5.9318 -3.5093 -2.4580 15 6 5.8270 -2.4517 -4.3086 16 1 5.7201 -1.4785 -4.7645 17 6 5.5441 -3.5884 -5.0360 18 7 5.2595 -3.4959 -6.3166 19 14 5.5650 -5.2600 -4.2023 20 1 4.1902 -5.6124 -3.7652 21 1 6.0583 -6.2837 -5.1582 22 1 6.4631 -5.2126 -3.0207 23 6 7.7909 -2.5287 -2.8277 24 6 8.4677 -1.4003 -3.2513 25 6 9.8487 -1.3630 -3.2013 26 6 10.5531 -2.4579 -2.7365 27 6 9.8765 -3.5883 -2.3178 28 6 8.4954 -3.6238 -2.3637 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8393 1.8989 0.9693 33 1 3.1135 1.4483 -0.1890 34 1 1.5306 2.0079 -0.7804 35 1 1.6765 -1.7489 1.2494 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -0.2073 2.1392 38 1 1.8013 -0.5830 -3.3857 39 1 0.3323 -0.2024 -2.4554 40 1 1.3830 1.7675 -3.3044 41 1 3.9466 0.1390 -0.8844 42 1 5.9825 -0.4603 -2.5455 43 1 6.1341 -1.4254 -1.0576 44 1 5.0608 -4.2956 -6.8283 45 1 7.9174 -0.5462 -3.6177 46 1 10.3773 -0.4798 -3.5280 47 1 11.6321 -2.4298 -2.6999 48 1 10.4269 -4.4434 -1.9543 49 1 7.9668 -4.5069 -2.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356787263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:03 Heat of formation + Delta-G solvation = -93.442284 kcal Electronic energy + Delta-G solvation = -28069.498676 eV Core-core repulsion = 24381.215515 eV Total energy + Delta-G solvation = -3688.283160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18348 -40.08254 -39.01065 -36.63650 -35.85824 -34.37557 -33.70189 -31.61656 -30.74862 -29.68248 -28.24042 -28.04423 -27.27888 -24.57946 -23.72003 -23.25532 -21.60343 -20.80963 -19.73933 -19.05142 -18.38189 -17.99276 -17.41431 -17.05862 -16.56716 -16.09783 -15.91070 -15.60766 -15.37025 -15.18037 -14.81321 -14.59895 -14.50397 -14.22055 -14.08716 -13.90331 -13.67063 -13.52314 -13.33142 -13.26045 -12.93049 -12.88694 -12.75354 -12.59858 -12.42892 -12.12162 -11.91340 -11.79955 -11.65611 -11.50237 -11.40178 -11.39002 -11.05720 -10.74832 -10.61455 -10.43767 -9.83809 -9.62105 -9.29284 -8.23259 -6.18794 0.68830 0.74120 1.28612 1.37283 1.39831 1.95843 2.39427 2.40937 3.07433 3.25727 3.41125 3.65881 3.90930 4.08761 4.10887 4.12887 4.31183 4.32696 4.36754 4.41207 4.45385 4.50041 4.51238 4.64422 4.71743 4.79822 4.84574 4.86415 4.88600 4.90436 4.98362 5.09536 5.12760 5.17512 5.22483 5.28346 5.35978 5.38596 5.40744 5.51500 5.66971 5.70022 5.77295 5.80388 5.82946 6.02567 6.33361 6.36314 6.79521 6.79907 6.86825 7.44667 7.58737 8.93748 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.004133 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.396478 B = 6772.619686 C = 7631.459220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.155 3.845 6 H 0.070 0.930 7 C 0.068 3.932 8 O -0.559 6.559 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.564 6.564 12 C -0.114 4.114 13 C 0.055 3.945 14 H 0.036 0.964 15 C -0.461 4.461 16 H 0.032 0.968 17 C 0.023 3.977 18 N -0.953 5.953 19 Si 0.923 3.077 20 H -0.292 1.292 21 H -0.296 1.296 22 H -0.226 1.226 23 C -0.060 4.060 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.142 4.142 27 C -0.123 4.123 28 C -0.157 4.157 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.385 0.615 41 H 0.408 0.592 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.258 0.742 45 H 0.111 0.889 46 H 0.140 0.860 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 10.157 16.369 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.199 4.199 5 C 0.050 3.950 6 H 0.088 0.912 7 C -0.011 4.011 8 O -0.366 6.366 9 N -0.368 5.368 10 C 0.299 3.701 11 O -0.441 6.441 12 C -0.154 4.154 13 C 0.036 3.964 14 H 0.054 0.946 15 C -0.498 4.498 16 H 0.050 0.950 17 C -0.173 4.173 18 N -0.595 5.595 19 Si 0.750 3.250 20 H -0.219 1.219 21 H -0.223 1.223 22 H -0.150 1.150 23 C -0.060 4.060 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.159 4.159 27 C -0.141 4.141 28 C -0.175 4.175 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.028 0.972 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.246 0.754 42 H 0.109 0.891 43 H 0.119 0.881 44 H 0.067 0.933 45 H 0.129 0.871 46 H 0.158 0.842 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.426 9.240 16.393 18.974 hybrid contribution -0.577 -0.770 -1.072 1.441 sum -3.004 8.470 15.321 17.762 Atomic orbital electron populations 1.21906 0.92894 1.01938 1.02936 1.20686 0.96765 0.96403 0.92468 1.21992 1.00724 0.94349 1.02288 1.21894 1.01054 0.99842 0.97069 1.21054 0.80360 0.98915 0.94674 0.91168 1.22493 0.98906 0.82707 0.96946 1.86540 1.79530 1.20344 1.50173 1.46006 1.06816 1.28516 1.55439 1.21003 0.90690 0.81507 0.76943 1.90695 1.73297 1.34886 1.45244 1.21600 0.90741 1.01281 1.01769 1.18060 0.88547 0.95354 0.94463 0.94608 1.20771 1.41333 0.92419 0.95314 0.95008 1.25604 0.94606 1.02328 0.94741 1.70039 1.51262 1.29741 1.08428 0.86134 0.78430 0.80539 0.79878 1.21925 1.22317 1.14963 1.20485 0.96826 0.93963 0.94775 1.21015 0.94852 0.98226 1.00069 1.21398 0.93547 0.99600 0.99547 1.21334 1.00722 0.93309 1.00580 1.21335 0.93439 0.99180 1.00160 1.21288 0.95362 0.98178 1.02696 0.92950 0.91896 0.90812 0.92202 0.93719 0.89805 0.93560 0.93013 0.90784 0.97161 0.90926 0.76614 0.75374 0.89075 0.88061 0.93343 0.87108 0.84175 0.83552 0.84301 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.94 71.98 0.57 -1.74 16 2 C -0.06 -1.24 0.62 -52.18 -0.03 -1.27 16 3 C -0.14 -2.47 7.45 71.98 0.54 -1.93 16 4 C -0.14 -2.66 8.34 71.98 0.60 -2.06 16 5 C 0.16 4.30 1.78 44.99 0.08 4.38 16 6 H 0.07 2.30 7.58 -2.39 -0.02 2.28 16 7 C 0.07 1.87 6.26 71.98 0.45 2.32 16 8 O -0.56 -12.63 9.87 -148.98 -1.47 -14.11 16 9 N -0.71 -21.59 4.37 -442.56 -1.93 -23.52 16 10 C 0.51 20.58 7.55 87.66 0.66 21.24 16 11 O -0.56 -28.77 14.68 -3.02 -0.04 -28.81 16 12 C -0.11 -4.33 4.84 29.85 0.14 -4.18 16 13 C 0.06 2.58 1.28 -12.28 -0.02 2.56 16 14 H 0.04 1.78 4.51 -2.39 -0.01 1.77 16 15 C -0.46 -26.62 7.20 25.60 0.18 -26.44 16 16 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 17 C 0.02 1.43 5.47 84.66 0.46 1.90 16 18 N -0.95 -63.05 13.96 21.45 0.30 -62.75 16 19 Si 0.92 49.06 27.34 68.60 1.88 50.94 16 20 H -0.29 -16.13 7.11 99.48 0.71 -15.42 16 21 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 22 H -0.23 -10.74 4.33 99.48 0.43 -10.31 16 23 C -0.06 -2.51 4.77 -19.87 -0.09 -2.60 16 24 C -0.12 -4.68 8.92 22.27 0.20 -4.48 16 25 C -0.12 -3.81 10.05 22.27 0.22 -3.59 16 26 C -0.14 -4.03 10.05 22.27 0.22 -3.81 16 27 C -0.12 -3.86 10.05 22.27 0.22 -3.64 16 28 C -0.16 -6.05 9.33 22.27 0.21 -5.84 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.02 6.37 -2.39 -0.02 1.01 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 33 H 0.04 0.86 5.90 -2.38 -0.01 0.84 16 34 H 0.08 1.60 5.61 -2.38 -0.01 1.59 16 35 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.05 1.03 7.78 -2.38 -0.02 1.01 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.07 1.63 6.44 -2.39 -0.02 1.61 16 40 H 0.38 6.02 9.12 -74.05 -0.68 5.35 16 41 H 0.41 10.17 6.40 -92.71 -0.59 9.58 16 42 H 0.09 3.30 7.45 -2.39 -0.02 3.28 16 43 H 0.10 3.12 8.14 -2.39 -0.02 3.11 16 44 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 45 H 0.11 4.21 7.49 -2.91 -0.02 4.19 16 46 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 48 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 49 H 0.11 4.17 6.37 -2.91 -0.02 4.15 16 Total: -1.00 -78.51 379.16 2.77 -75.74 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.59 Total: 31.70 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 4.63 Total: -29.19 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.63 Total: -86.27 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.51 Total: -42.92 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.88 Total: 50.94 kcal Total: -78.51 2.77 -75.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356787263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.701 kcal (2) G-P(sol) polarization free energy of solvation -78.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds