Wall clock time and date at job start Tue Mar 31 2020 12:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.46934 * 2 1 4 4 C 1.53004 * 109.47224 * 239.99934 * 2 1 3 5 5 C 1.53003 * 109.47049 * 120.00025 * 2 1 3 6 6 C 1.53007 * 109.47154 * 59.99882 * 5 2 1 7 7 C 1.52994 * 109.46782 * 179.97438 * 6 5 2 8 8 H 1.08996 * 109.47163 * 55.00802 * 7 6 5 9 9 C 1.53008 * 109.46720 * 175.00316 * 7 6 5 10 10 O 1.42891 * 109.47234 * 54.99781 * 9 7 6 11 11 N 1.46490 * 109.47471 * 295.00058 * 7 6 5 12 12 C 1.34780 * 120.00427 * 155.00252 * 11 7 6 13 13 O 1.21589 * 119.99465 * 0.02562 * 12 11 7 14 14 C 1.47636 * 120.00414 * 179.97438 * 12 11 7 15 15 C 1.40011 * 119.89616 * 179.97438 * 14 12 11 16 16 C 1.36310 * 120.10924 * 179.74696 * 15 14 12 17 17 C 1.40888 * 119.89369 * 0.25762 * 16 15 14 18 18 C 1.41113 * 120.11022 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00340 * 204.64020 * 18 17 16 20 20 C 1.40225 * 119.99501 * 24.64249 * 18 17 16 21 21 N 1.30650 * 120.00211 * 17.87474 * 20 18 17 22 22 Si 1.86794 * 120.00050 * 197.87472 * 20 18 17 23 23 H 1.48506 * 109.47002 * 59.99738 * 22 20 18 24 24 H 1.48498 * 109.47634 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47267 * 300.00310 * 22 20 18 26 26 C 1.40889 * 119.79085 * 0.02562 * 17 16 15 27 27 C 1.36318 * 119.88917 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.47067 * 299.99923 * 1 2 3 29 29 H 1.08999 * 109.46564 * 60.00560 * 1 2 3 30 30 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47349 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47372 * 299.99846 * 3 2 1 33 33 H 1.08999 * 109.47562 * 59.99984 * 3 2 1 34 34 H 1.09004 * 109.46983 * 299.99940 * 4 2 1 35 35 H 1.09005 * 109.46983 * 59.99816 * 4 2 1 36 36 H 1.08990 * 109.47068 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47029 * 300.00641 * 5 2 1 38 38 H 1.08995 * 109.46985 * 179.97438 * 5 2 1 39 39 H 1.09001 * 109.46654 * 59.99922 * 6 5 2 40 40 H 1.08998 * 109.47039 * 300.00626 * 6 5 2 41 41 H 1.08998 * 109.47166 * 175.00228 * 9 7 6 42 42 H 1.09002 * 109.46790 * 294.99860 * 9 7 6 43 43 H 0.96702 * 114.00011 * 179.97438 * 10 9 7 44 44 H 0.97003 * 120.00332 * 334.99999 * 11 7 6 45 45 H 1.08001 * 119.94548 * 0.03305 * 15 14 12 46 46 H 1.08001 * 120.05980 * 180.28209 * 16 15 14 47 47 H 0.97002 * 120.00128 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.05749 * 180.02562 * 26 17 16 49 49 H 1.08002 * 119.94435 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 6 2.0406 -2.8852 2.4982 8 1 1.7525 -2.3224 3.3861 9 6 1.4305 -4.2869 2.5626 10 8 1.7102 -4.9844 1.3473 11 7 3.5005 -2.9903 2.4389 12 6 4.2144 -3.1082 3.5760 13 8 3.6466 -3.1277 4.6510 14 6 5.6857 -3.2147 3.5163 15 6 6.4252 -3.3365 4.6989 16 6 7.7834 -3.4403 4.6486 17 6 8.4435 -3.4195 3.4041 18 6 9.8493 -3.5272 3.3466 19 1 10.3874 -3.1282 2.4994 20 6 10.5478 -4.1524 4.3895 21 7 9.9140 -4.9311 5.2254 22 14 12.3843 -3.8718 4.5836 23 1 12.6445 -2.4250 4.7942 24 1 12.8814 -4.6392 5.7537 25 1 13.0870 -4.3276 3.3573 26 6 7.6956 -3.2907 2.2171 27 6 6.3377 -3.1875 2.2776 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -0.2075 2.1392 38 1 3.1300 -0.7217 1.2490 39 1 1.8934 -2.6776 0.3593 40 1 0.4400 -2.1638 1.2492 41 1 1.8614 -4.8324 3.4022 42 1 0.3516 -4.2077 2.6961 43 1 1.3528 -5.8825 1.3181 44 1 3.9535 -2.9751 1.5813 45 1 5.9182 -3.3529 5.6525 46 1 8.3526 -3.5389 5.5611 47 1 10.3972 -5.3639 5.9466 48 1 8.1972 -3.2746 1.2608 49 1 5.7635 -3.0892 1.3682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358454547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:44 Heat of formation + Delta-G solvation = -104.551913 kcal Electronic energy + Delta-G solvation = -26988.815379 eV Core-core repulsion = 23300.050469 eV Total energy + Delta-G solvation = -3688.764910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.51933 -38.21028 -37.23972 -36.59154 -34.37770 -33.85633 -31.33126 -29.97519 -29.37301 -28.04799 -27.41820 -27.36703 -25.78561 -23.74899 -22.20227 -21.13835 -20.29371 -19.62067 -18.68788 -17.53829 -17.35076 -16.78671 -15.84065 -15.33349 -15.17115 -14.76962 -14.51887 -14.24806 -13.97911 -13.92990 -13.79410 -13.47827 -13.22034 -12.90408 -12.68301 -12.61986 -12.19801 -12.08330 -12.01558 -11.82394 -11.78120 -11.59303 -11.39987 -11.32240 -11.20113 -11.03207 -10.97352 -10.61231 -10.52654 -10.46795 -10.39120 -10.03870 -9.91963 -9.50525 -9.30210 -8.91530 -8.51678 -7.66358 -7.53046 -6.99275 -4.57317 2.27943 2.93896 2.96567 3.00043 3.06782 3.76129 3.83190 3.90447 4.37848 4.52191 4.61612 4.71309 4.72899 5.03865 5.18331 5.20716 5.39721 5.45051 5.51218 5.52630 5.60759 5.63955 5.67466 5.69143 5.76827 5.80724 5.84681 5.92860 5.98623 6.00339 6.04893 6.14263 6.22425 6.23360 6.32111 6.37972 6.44763 6.83177 6.87124 7.04878 7.10735 7.15181 7.47066 7.64593 7.65806 7.83171 7.91326 8.08877 8.32974 8.46197 8.66056 8.78903 9.13618 9.92660 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002798 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.599946 B =10003.162334 C =10873.090416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.122 4.122 7 C 0.151 3.849 8 H 0.093 0.907 9 C 0.063 3.937 10 O -0.567 6.567 11 N -0.727 5.727 12 C 0.571 3.429 13 O -0.579 6.579 14 C -0.282 4.282 15 C -0.037 4.037 16 C -0.183 4.183 17 C 0.129 3.871 18 C -0.445 4.445 19 H 0.084 0.916 20 C 0.074 3.926 21 N -0.770 5.770 22 Si 0.913 3.087 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.236 4.236 27 C -0.048 4.048 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.374 0.626 44 H 0.398 0.602 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.287 0.713 48 H 0.096 0.904 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 4.874 -8.808 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.148 4.148 6 C -0.160 4.160 7 C 0.046 3.954 8 H 0.111 0.889 9 C -0.016 4.016 10 O -0.372 6.372 11 N -0.379 5.379 12 C 0.366 3.634 13 O -0.461 6.461 14 C -0.286 4.286 15 C -0.056 4.056 16 C -0.202 4.202 17 C 0.126 3.874 18 C -0.473 4.473 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.393 5.393 22 Si 0.737 3.263 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.187 1.187 26 C -0.255 4.255 27 C -0.067 4.067 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.220 0.780 44 H 0.233 0.767 45 H 0.117 0.883 46 H 0.138 0.862 47 H 0.099 0.901 48 H 0.114 0.886 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.872 5.267 -7.986 16.851 hybrid contribution 0.706 -0.603 -0.096 0.933 sum -13.166 4.664 -8.082 16.137 Atomic orbital electron populations 1.21928 0.94938 1.01781 1.01324 1.20546 0.95416 0.95367 0.95640 1.21870 1.01229 0.95451 1.01354 1.21939 1.01229 1.00419 0.96551 1.21671 1.01325 0.94900 0.96881 1.21881 1.00803 0.95241 0.98082 1.20915 0.81622 0.93531 0.99376 0.88887 1.22688 0.97868 0.94152 0.86882 1.86471 1.81164 1.30961 1.38561 1.45866 1.05607 1.76888 1.09564 1.18611 0.87902 0.74072 0.82787 1.90622 1.72865 1.53380 1.29233 1.18917 0.90200 1.24922 0.94598 1.20474 0.93979 0.95296 0.95846 1.21009 0.92877 1.08014 0.98349 1.17770 0.93132 0.85496 0.91042 1.19797 0.92046 1.31074 1.04335 0.89822 1.26098 1.01740 0.92633 0.94264 1.69746 1.39212 1.18226 1.12142 0.86271 0.81173 0.79959 0.78905 1.18488 1.20056 1.18704 1.20664 0.93125 1.14517 0.97193 1.20365 0.94643 0.97010 0.94643 0.92840 0.93092 0.92351 0.92525 0.92963 0.92820 0.92179 0.93131 0.92530 0.92094 0.91392 0.90297 0.90931 0.93010 0.93618 0.78030 0.76694 0.88275 0.86208 0.90149 0.88561 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 2 C -0.07 -0.65 0.80 -154.50 -0.12 -0.77 16 3 C -0.14 -1.29 8.47 37.15 0.31 -0.98 16 4 C -0.14 -1.32 8.12 37.16 0.30 -1.02 16 5 C -0.11 -1.21 4.16 -26.73 -0.11 -1.32 16 6 C -0.12 -1.35 3.77 -26.73 -0.10 -1.45 16 7 C 0.15 2.11 2.37 -67.93 -0.16 1.94 16 8 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 9 C 0.06 0.82 6.85 37.16 0.25 1.07 16 10 O -0.57 -6.93 12.82 -35.23 -0.45 -7.38 16 11 N -0.73 -12.13 4.42 -54.82 -0.24 -12.37 16 12 C 0.57 12.17 7.73 -12.42 -0.10 12.08 16 13 O -0.58 -13.76 15.99 5.29 0.08 -13.68 16 14 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 15 C -0.04 -0.91 9.52 -39.61 -0.38 -1.28 16 16 C -0.18 -4.74 8.64 -39.27 -0.34 -5.08 16 17 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 18 C -0.44 -11.17 9.04 -37.75 -0.34 -11.52 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 20 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 21 N -0.77 -19.04 10.95 55.56 0.61 -18.43 16 22 Si 0.91 17.56 29.60 -169.99 -5.03 12.53 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 26 C -0.24 -5.52 9.73 -39.27 -0.38 -5.91 16 27 C -0.05 -1.03 9.47 -39.61 -0.38 -1.41 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.55 6.43 -51.93 -0.33 0.22 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 39 H 0.08 0.91 6.02 -51.93 -0.31 0.59 16 40 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.37 3.02 9.12 45.56 0.42 3.44 16 44 H 0.40 6.22 6.60 -40.82 -0.27 5.95 16 45 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 46 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 47 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 48 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 49 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -29.10 390.68 -8.90 -38.01 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.22 Total: 14.70 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -2.54 Total: -19.26 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.37 Total: -30.80 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.37 Total: -21.06 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.10 -8.90 -38.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358454547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.546 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds