Wall clock time and date at job start Tue Mar 31 2020 12:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52991 * 109.46934 * 2 1 4 4 C 1.53004 * 109.47224 * 239.99934 * 2 1 3 5 5 C 1.53003 * 109.47049 * 120.00025 * 2 1 3 6 6 C 1.53007 * 109.47154 * 59.99882 * 5 2 1 7 7 C 1.52994 * 109.46782 * 179.97438 * 6 5 2 8 8 H 1.08996 * 109.47163 * 55.00802 * 7 6 5 9 9 C 1.53008 * 109.46720 * 175.00316 * 7 6 5 10 10 O 1.42891 * 109.47234 * 54.99781 * 9 7 6 11 11 N 1.46490 * 109.47471 * 295.00058 * 7 6 5 12 12 C 1.34780 * 120.00427 * 155.00252 * 11 7 6 13 13 O 1.21589 * 119.99465 * 0.02562 * 12 11 7 14 14 C 1.47636 * 120.00414 * 179.97438 * 12 11 7 15 15 C 1.40011 * 119.89616 * 179.97438 * 14 12 11 16 16 C 1.36310 * 120.10924 * 179.74696 * 15 14 12 17 17 C 1.40888 * 119.89369 * 0.25762 * 16 15 14 18 18 C 1.41113 * 120.11022 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00340 * 204.64020 * 18 17 16 20 20 C 1.40225 * 119.99501 * 24.64249 * 18 17 16 21 21 N 1.30650 * 120.00211 * 17.87474 * 20 18 17 22 22 Si 1.86794 * 120.00050 * 197.87472 * 20 18 17 23 23 H 1.48506 * 109.47002 * 59.99738 * 22 20 18 24 24 H 1.48498 * 109.47634 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47267 * 300.00310 * 22 20 18 26 26 C 1.40889 * 119.79085 * 0.02562 * 17 16 15 27 27 C 1.36318 * 119.88917 * 359.97438 * 26 17 16 28 28 H 1.08993 * 109.47067 * 299.99923 * 1 2 3 29 29 H 1.08999 * 109.46564 * 60.00560 * 1 2 3 30 30 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47349 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47372 * 299.99846 * 3 2 1 33 33 H 1.08999 * 109.47562 * 59.99984 * 3 2 1 34 34 H 1.09004 * 109.46983 * 299.99940 * 4 2 1 35 35 H 1.09005 * 109.46983 * 59.99816 * 4 2 1 36 36 H 1.08990 * 109.47068 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47029 * 300.00641 * 5 2 1 38 38 H 1.08995 * 109.46985 * 179.97438 * 5 2 1 39 39 H 1.09001 * 109.46654 * 59.99922 * 6 5 2 40 40 H 1.08998 * 109.47039 * 300.00626 * 6 5 2 41 41 H 1.08998 * 109.47166 * 175.00228 * 9 7 6 42 42 H 1.09002 * 109.46790 * 294.99860 * 9 7 6 43 43 H 0.96702 * 114.00011 * 179.97438 * 10 9 7 44 44 H 0.97003 * 120.00332 * 334.99999 * 11 7 6 45 45 H 1.08001 * 119.94548 * 0.03305 * 15 14 12 46 46 H 1.08001 * 120.05980 * 180.28209 * 16 15 14 47 47 H 0.97002 * 120.00128 * 179.97438 * 21 20 18 48 48 H 1.07999 * 120.05749 * 180.02562 * 26 17 16 49 49 H 1.08002 * 119.94435 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 6 2.0406 -2.8852 2.4982 8 1 1.7525 -2.3224 3.3861 9 6 1.4305 -4.2869 2.5626 10 8 1.7102 -4.9844 1.3473 11 7 3.5005 -2.9903 2.4389 12 6 4.2144 -3.1082 3.5760 13 8 3.6466 -3.1277 4.6510 14 6 5.6857 -3.2147 3.5163 15 6 6.4252 -3.3365 4.6989 16 6 7.7834 -3.4403 4.6486 17 6 8.4435 -3.4195 3.4041 18 6 9.8493 -3.5272 3.3466 19 1 10.3874 -3.1282 2.4994 20 6 10.5478 -4.1524 4.3895 21 7 9.9140 -4.9311 5.2254 22 14 12.3843 -3.8718 4.5836 23 1 12.6445 -2.4250 4.7942 24 1 12.8814 -4.6392 5.7537 25 1 13.0870 -4.3276 3.3573 26 6 7.6956 -3.2907 2.2171 27 6 6.3377 -3.1875 2.2776 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -0.2075 2.1392 38 1 3.1300 -0.7217 1.2490 39 1 1.8934 -2.6776 0.3593 40 1 0.4400 -2.1638 1.2492 41 1 1.8614 -4.8324 3.4022 42 1 0.3516 -4.2077 2.6961 43 1 1.3528 -5.8825 1.3181 44 1 3.9535 -2.9751 1.5813 45 1 5.9182 -3.3529 5.6525 46 1 8.3526 -3.5389 5.5611 47 1 10.3972 -5.3639 5.9466 48 1 8.1972 -3.2746 1.2608 49 1 5.7635 -3.0892 1.3682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358454547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:43 Heat of formation + Delta-G solvation = -121.738483 kcal Electronic energy + Delta-G solvation = -26989.560644 eV Core-core repulsion = 23300.050469 eV Total energy + Delta-G solvation = -3689.510175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.99959 -39.44083 -38.70765 -37.76729 -35.70668 -35.60614 -32.72492 -31.77136 -31.08501 -29.13967 -28.09370 -28.07257 -27.56471 -24.76024 -23.84173 -22.88228 -21.68466 -21.23362 -19.45531 -19.35692 -18.57987 -18.24074 -17.20979 -17.00285 -16.23232 -15.82418 -15.73201 -15.63724 -15.47996 -15.05009 -14.95517 -14.74123 -14.57905 -14.40959 -14.04073 -13.94854 -13.57085 -13.50471 -13.23133 -12.97805 -12.81434 -12.73377 -12.64308 -12.50081 -12.48326 -12.33244 -12.28450 -11.86831 -11.77510 -11.36210 -11.33698 -11.29435 -11.23933 -11.11385 -10.92548 -10.61500 -9.97423 -9.56752 -9.40183 -8.78842 -6.48141 0.45899 1.15208 1.37516 1.44367 1.51718 2.12431 2.18547 2.42526 2.80138 3.43977 3.62933 3.70329 3.92303 3.97020 4.15448 4.20719 4.29527 4.32192 4.37367 4.41047 4.47951 4.60218 4.72174 4.75282 4.79300 4.85906 4.93160 4.96341 4.98051 4.99459 5.02395 5.12705 5.15175 5.19042 5.22902 5.26577 5.28388 5.35280 5.46209 5.58419 5.59329 5.61823 5.71017 5.79435 5.97385 6.02139 6.20628 6.55890 6.76815 6.77312 6.88683 6.89980 7.49091 8.16202 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017021 B = 0.002798 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.599946 B =10003.162334 C =10873.090416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.143 4.143 5 C -0.109 4.109 6 C -0.108 4.108 7 C 0.143 3.857 8 H 0.080 0.920 9 C 0.069 3.931 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.571 3.429 13 O -0.609 6.609 14 C -0.292 4.292 15 C -0.050 4.050 16 C -0.203 4.203 17 C 0.102 3.898 18 C -0.474 4.474 19 H 0.092 0.908 20 C 0.034 3.966 21 N -0.804 5.804 22 Si 0.989 3.011 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.253 1.253 26 C -0.246 4.246 27 C -0.037 4.037 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.022 0.978 42 H 0.078 0.922 43 H 0.393 0.607 44 H 0.405 0.595 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.295 0.705 48 H 0.114 0.886 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 5.154 -10.976 18.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.147 4.147 6 C -0.145 4.145 7 C 0.039 3.961 8 H 0.098 0.902 9 C -0.010 4.010 10 O -0.384 6.384 11 N -0.359 5.359 12 C 0.365 3.635 13 O -0.494 6.494 14 C -0.297 4.297 15 C -0.070 4.070 16 C -0.223 4.223 17 C 0.099 3.901 18 C -0.501 4.501 19 H 0.110 0.890 20 C -0.185 4.185 21 N -0.428 5.428 22 Si 0.809 3.191 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.177 1.177 26 C -0.266 4.266 27 C -0.056 4.056 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.040 0.960 42 H 0.096 0.904 43 H 0.242 0.758 44 H 0.242 0.758 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.106 0.894 48 H 0.133 0.867 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.725 5.533 -10.199 18.747 hybrid contribution 0.835 -0.703 0.548 1.221 sum -13.889 4.831 -9.652 17.590 Atomic orbital electron populations 1.21909 0.93791 1.02253 1.01820 1.20525 0.96288 0.95130 0.94791 1.21876 1.00646 0.95585 1.01854 1.21930 1.00712 1.00602 0.96785 1.21646 1.00173 0.95185 0.97649 1.21800 1.01892 0.94583 0.96258 1.21188 0.79604 0.94855 1.00469 0.90244 1.22531 0.99362 0.92887 0.86198 1.86414 1.81687 1.32494 1.37760 1.45721 1.06956 1.74858 1.08368 1.18392 0.87374 0.74223 0.83532 1.90602 1.73191 1.54957 1.30631 1.19210 0.91573 1.24313 0.94580 1.20542 0.93927 0.95966 0.96519 1.20939 0.93235 1.09831 0.98251 1.18125 0.94098 0.86277 0.91649 1.20126 0.92263 1.32048 1.05653 0.89006 1.27025 1.06567 0.91608 0.93305 1.69801 1.41380 1.18851 1.12735 0.85138 0.74885 0.79815 0.79307 1.18238 1.19198 1.17671 1.20927 0.93904 1.14517 0.97223 1.20656 0.94345 0.95080 0.95485 0.92829 0.92195 0.91857 0.93473 0.91851 0.92961 0.92004 0.92141 0.93368 0.92751 0.93221 0.90092 0.88796 0.96009 0.90413 0.75799 0.75842 0.89107 0.87804 0.89370 0.86747 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.12 71.98 0.58 -1.36 16 2 C -0.07 -1.12 0.80 -52.18 -0.04 -1.16 16 3 C -0.14 -2.38 8.47 71.98 0.61 -1.77 16 4 C -0.14 -2.28 8.12 71.98 0.58 -1.70 16 5 C -0.11 -2.22 4.16 30.60 0.13 -2.09 16 6 C -0.11 -2.11 3.77 30.59 0.12 -2.00 16 7 C 0.14 3.79 2.37 44.99 0.11 3.90 16 8 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 9 C 0.07 1.66 6.85 71.98 0.49 2.16 16 10 O -0.58 -12.58 12.82 -148.98 -1.91 -14.49 16 11 N -0.71 -22.94 4.42 -445.61 -1.97 -24.91 16 12 C 0.57 24.47 7.73 86.72 0.67 25.14 16 13 O -0.61 -29.60 15.99 -4.00 -0.06 -29.67 16 14 C -0.29 -13.69 5.89 -19.94 -0.12 -13.81 16 15 C -0.05 -2.60 9.52 22.25 0.21 -2.38 16 16 C -0.20 -11.00 8.64 22.47 0.19 -10.80 16 17 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 18 C -0.47 -24.15 9.04 23.46 0.21 -23.93 16 19 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 20 C 0.03 1.61 5.14 85.35 0.44 2.05 16 21 N -0.80 -40.77 10.95 21.87 0.24 -40.53 16 22 Si 0.99 35.77 29.60 68.60 2.03 37.80 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 24 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 25 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 26 C -0.25 -11.51 9.73 22.47 0.22 -11.29 16 27 C -0.04 -1.57 9.47 22.25 0.21 -1.36 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.81 6.43 -2.39 -0.02 0.80 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.96 6.43 -2.38 -0.02 0.95 16 35 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.19 7.75 -2.39 -0.02 1.17 16 39 H 0.08 1.61 6.02 -2.39 -0.01 1.60 16 40 H 0.09 1.50 6.43 -2.39 -0.02 1.48 16 41 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.39 5.29 9.12 -74.06 -0.68 4.62 16 44 H 0.40 11.90 6.60 -92.71 -0.61 11.29 16 45 H 0.09 4.72 7.63 -2.91 -0.02 4.70 16 46 H 0.10 5.82 6.16 -2.91 -0.02 5.81 16 47 H 0.30 13.45 8.29 -92.71 -0.77 12.68 16 48 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 49 H 0.13 4.34 6.37 -2.91 -0.02 4.33 16 Total: -1.00 -64.68 390.68 2.49 -62.19 By element: Atomic # 1 Polarization: 45.11 SS G_CDS: -0.33 Total: 44.78 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 4.50 Total: -35.16 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -1.73 Total: -65.44 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.97 Total: -44.16 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -64.68 2.49 -62.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358454547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.548 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds