Wall clock time and date at job start Tue Mar 31 2020 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 C 1.53002 * 109.47051 * 305.00302 * 3 2 1 5 5 C 1.52990 * 109.47329 * 184.99872 * 3 2 1 6 6 O 1.42902 * 109.47024 * 64.99833 * 3 2 1 7 7 C 1.42899 * 114.00070 * 179.97438 * 6 3 2 8 8 C 1.50703 * 109.46942 * 180.02562 * 7 6 3 9 9 C 1.38127 * 120.03758 * 0.29835 * 8 7 6 10 10 C 1.38269 * 120.07044 * 180.27180 * 9 8 7 11 11 C 1.38298 * 120.13680 * 359.72831 * 10 9 8 12 12 C 1.38095 * 120.07641 * 359.97438 * 11 10 9 13 13 C 1.38851 * 120.03151 * 180.02562 * 8 7 6 14 14 N 1.39925 * 120.07292 * 359.97438 * 13 8 7 15 15 C 1.34775 * 119.99996 * 154.90107 * 14 13 8 16 16 O 1.21286 * 119.99958 * 354.47770 * 15 14 13 17 17 C 1.50701 * 119.99977 * 174.20149 * 15 14 13 18 18 C 1.53005 * 109.47222 * 180.27380 * 17 15 14 19 19 C 1.50701 * 109.47222 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99760 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00123 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99819 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47612 * 90.00001 * 23 21 19 25 25 H 1.48503 * 109.47104 * 209.99462 * 23 21 19 26 26 H 1.48503 * 109.47378 * 329.99652 * 23 21 19 27 27 H 1.09000 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47263 * 299.99811 * 1 2 3 29 29 H 1.08998 * 109.46971 * 60.00072 * 1 2 3 30 30 H 1.09002 * 109.46822 * 240.00487 * 2 1 3 31 31 H 1.08998 * 109.46971 * 119.99927 * 2 1 3 32 32 H 1.09002 * 109.46966 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46855 * 299.99673 * 4 3 2 34 34 H 1.08996 * 109.47204 * 59.99966 * 4 3 2 35 35 H 1.09001 * 109.47334 * 300.00593 * 5 3 2 36 36 H 1.09009 * 109.47106 * 60.00086 * 5 3 2 37 37 H 1.09000 * 109.47379 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.46859 * 60.00220 * 7 6 3 39 39 H 1.09000 * 109.47271 * 300.00287 * 7 6 3 40 40 H 1.08002 * 119.97128 * 359.97438 * 9 8 7 41 41 H 1.07991 * 119.92893 * 179.74573 * 10 9 8 42 42 H 1.08007 * 119.96537 * 179.97438 * 11 10 9 43 43 H 1.07994 * 120.03858 * 180.02562 * 12 11 10 44 44 H 0.97000 * 120.00184 * 334.90916 * 14 13 8 45 45 H 1.09000 * 109.47113 * 300.27819 * 17 15 14 46 46 H 1.09002 * 109.47330 * 60.27865 * 17 15 14 47 47 H 1.09000 * 109.47435 * 300.00242 * 18 17 15 48 48 H 1.09002 * 109.46573 * 60.00021 * 18 17 15 49 49 H 0.97002 * 120.00348 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1816 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 2.0923 3.4402 1.3236 8 6 1.6421 4.0114 2.6435 9 6 0.9326 3.2259 3.5309 10 6 0.5143 3.7510 4.7397 11 6 0.8095 5.0619 5.0666 12 6 1.5238 5.8507 4.1864 13 6 1.9450 5.3263 2.9712 14 7 2.6689 6.1228 2.0771 15 6 2.5443 7.4642 2.1166 16 8 1.7316 7.9762 2.8572 17 6 3.4190 8.3282 1.2451 18 6 3.0823 9.8012 1.4856 19 6 3.9575 10.6652 0.6146 20 1 4.6811 10.2093 -0.0449 21 6 3.8344 12.0377 0.6596 22 7 4.5984 12.7917 -0.1001 23 14 2.5833 12.8263 1.8008 24 1 3.2125 13.0881 3.1202 25 1 2.1152 14.1071 1.2128 26 1 1.4274 11.9107 1.9766 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.7929 3.2270 -1.1813 33 1 1.7183 1.7119 -2.1130 34 1 0.3436 2.1978 -1.0920 35 1 3.9994 0.9053 0.7161 36 1 3.8532 0.9571 -1.0571 37 1 3.9281 2.4721 -0.1261 38 1 1.6591 4.0209 0.5092 39 1 3.1797 3.4826 1.2617 40 1 0.7001 2.2019 3.2784 41 1 -0.0438 3.1360 5.4300 42 1 0.4811 5.4694 6.0114 43 1 1.7543 6.8742 4.4425 44 1 3.2604 5.7096 1.4288 45 1 4.4659 8.1499 1.4908 46 1 3.2446 8.0820 0.1977 47 1 2.0355 9.9795 1.2399 48 1 3.2567 10.0474 2.5331 49 1 4.5116 13.7574 -0.0688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362092820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:35 Heat of formation + Delta-G solvation = -74.038620 kcal Electronic energy + Delta-G solvation = -26837.692260 eV Core-core repulsion = 23150.250506 eV Total energy + Delta-G solvation = -3687.441754 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.62690 -39.52585 -38.28831 -34.86405 -34.62961 -33.59526 -31.50919 -31.47160 -30.57548 -29.61524 -27.80558 -26.64179 -25.99055 -23.81349 -23.06559 -21.50858 -20.92720 -19.98390 -19.76457 -17.76655 -17.19653 -16.67436 -16.34791 -16.07958 -15.82811 -15.29934 -15.08131 -14.57469 -14.40582 -14.14997 -14.01731 -13.88223 -13.68169 -13.38209 -13.14245 -12.97754 -12.62938 -12.57146 -12.44944 -12.26529 -12.09569 -11.99988 -11.60891 -11.55429 -11.43198 -11.13846 -11.11411 -11.02746 -10.61750 -10.38087 -10.25511 -10.09996 -9.90642 -9.83037 -9.30809 -9.24141 -8.68274 -8.55516 -7.95500 -6.07460 -4.06925 1.27646 1.46917 2.90838 3.17552 3.31441 3.34706 3.41768 3.51729 3.85266 4.34589 4.45435 4.46741 4.59280 4.75540 4.92779 4.94506 4.98657 5.07614 5.13924 5.15496 5.22877 5.25527 5.27871 5.28787 5.30565 5.44493 5.45697 5.59929 5.61388 5.67097 5.70869 5.74401 5.82447 5.91802 5.94714 5.96129 6.07802 6.10372 6.33798 6.39668 6.54200 6.58532 6.63986 7.02359 7.10631 7.27609 7.34866 7.51330 7.72544 8.35355 8.47825 8.94701 9.55116 11.05223 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002812 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.585788 B = 9953.718695 C =11312.233173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C 0.111 3.889 4 C -0.183 4.183 5 C -0.181 4.181 6 O -0.367 6.367 7 C 0.103 3.897 8 C -0.129 4.129 9 C -0.077 4.077 10 C -0.149 4.149 11 C -0.099 4.099 12 C -0.134 4.134 13 C 0.164 3.836 14 N -0.682 5.682 15 C 0.510 3.490 16 O -0.514 6.514 17 C -0.122 4.122 18 C 0.001 3.999 19 C -0.527 4.527 20 H 0.073 0.927 21 C 0.070 3.930 22 N -0.902 5.902 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.261 1.261 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.407 0.593 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.025 0.975 48 H 0.020 0.980 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -27.952 2.114 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C 0.072 3.928 4 C -0.241 4.241 5 C -0.238 4.238 6 O -0.286 6.286 7 C 0.027 3.973 8 C -0.131 4.131 9 C -0.096 4.096 10 C -0.168 4.168 11 C -0.118 4.118 12 C -0.154 4.154 13 C 0.069 3.931 14 N -0.327 5.327 15 C 0.300 3.700 16 O -0.388 6.388 17 C -0.162 4.162 18 C -0.036 4.036 19 C -0.565 4.565 20 H 0.091 0.909 21 C -0.132 4.132 22 N -0.541 5.541 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.185 1.185 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.166 0.834 44 H 0.243 0.757 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.043 0.957 48 H 0.039 0.961 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.192 -27.390 2.697 28.211 hybrid contribution -0.072 0.474 -0.038 0.481 sum -6.265 -26.916 2.658 27.763 Atomic orbital electron populations 1.21808 0.95234 1.01399 1.02628 1.21495 0.96819 0.93566 1.02542 1.21519 0.93466 0.93291 0.84523 1.22517 1.02363 1.00894 0.98292 1.22448 0.95776 1.02769 1.02812 1.87915 1.78329 1.24352 1.38032 1.21075 0.98064 0.83388 0.94769 1.19328 1.03710 0.93361 0.96748 1.20730 0.96245 0.99747 0.92838 1.21090 1.02464 0.95757 0.97527 1.21081 0.97767 0.93768 0.99158 1.21433 1.00184 1.01906 0.91888 1.17610 0.95604 0.89662 0.90225 1.43910 1.45363 1.07105 1.36293 1.21813 0.83603 0.81166 0.83450 1.90629 1.35435 1.73077 1.39688 1.21730 0.98494 0.97360 0.98572 1.19387 0.97745 0.88986 0.97530 1.21072 1.20563 0.91026 1.23797 0.90893 1.24967 0.95583 0.97309 0.95331 1.69905 1.39432 1.05054 1.39678 0.86799 0.82810 0.78819 0.81143 1.20200 1.21396 1.18526 0.92974 0.91817 0.92488 0.90767 0.91165 0.92080 0.91472 0.91177 0.91636 0.91432 0.91992 0.91840 0.92241 0.85062 0.86298 0.85973 0.83443 0.75749 0.89093 0.89259 0.95688 0.96146 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.32 37.16 0.35 -0.71 16 2 C -0.11 -0.71 5.23 -26.73 -0.14 -0.85 16 3 C 0.11 0.86 0.82 -90.62 -0.07 0.78 16 4 C -0.18 -1.36 7.76 37.16 0.29 -1.07 16 5 C -0.18 -1.24 8.25 37.15 0.31 -0.93 16 6 O -0.37 -3.60 8.00 -35.23 -0.28 -3.88 16 7 C 0.10 1.04 4.49 36.01 0.16 1.21 16 8 C -0.13 -1.59 5.90 -104.43 -0.62 -2.21 16 9 C -0.08 -0.91 9.37 -39.61 -0.37 -1.28 16 10 C -0.15 -1.71 10.04 -39.55 -0.40 -2.11 16 11 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 12 C -0.13 -2.03 8.72 -39.39 -0.34 -2.37 16 13 C 0.16 2.34 6.41 -83.69 -0.54 1.81 16 14 N -0.68 -9.38 5.17 -9.86 -0.05 -9.43 16 15 C 0.51 8.95 7.63 -10.99 -0.08 8.86 16 16 O -0.51 -10.83 13.15 5.55 0.07 -10.75 16 17 C -0.12 -2.24 5.64 -27.88 -0.16 -2.40 16 18 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 19 C -0.53 -14.75 9.66 -34.44 -0.33 -15.09 16 20 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 23 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 29 H 0.06 0.38 6.34 -51.93 -0.33 0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 38 H 0.06 0.64 6.42 -51.93 -0.33 0.31 16 39 H 0.06 0.53 6.14 -51.93 -0.32 0.21 16 40 H 0.13 1.40 7.00 -52.49 -0.37 1.03 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 43 H 0.15 2.53 5.79 -52.49 -0.30 2.23 16 44 H 0.41 4.25 7.68 -40.82 -0.31 3.94 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 48 H 0.02 0.51 7.53 -51.93 -0.39 0.11 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -33.05 385.46 -8.84 -41.89 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.96 Total: 1.75 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.54 Total: -16.14 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.72 Total: -36.30 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.21 Total: -14.63 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.05 -8.84 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362092820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.147 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds