Wall clock time and date at job start Tue Mar 31 2020 13:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47089 * 2 1 4 4 C 1.53002 * 109.47051 * 305.00302 * 3 2 1 5 5 C 1.52990 * 109.47329 * 184.99872 * 3 2 1 6 6 O 1.42902 * 109.47024 * 64.99833 * 3 2 1 7 7 C 1.42899 * 114.00070 * 179.97438 * 6 3 2 8 8 C 1.50703 * 109.46942 * 180.02562 * 7 6 3 9 9 C 1.38127 * 120.03758 * 0.29835 * 8 7 6 10 10 C 1.38269 * 120.07044 * 180.27180 * 9 8 7 11 11 C 1.38298 * 120.13680 * 359.72831 * 10 9 8 12 12 C 1.38095 * 120.07641 * 359.97438 * 11 10 9 13 13 C 1.38851 * 120.03151 * 180.02562 * 8 7 6 14 14 N 1.39925 * 120.07292 * 359.97438 * 13 8 7 15 15 C 1.34775 * 119.99996 * 154.90107 * 14 13 8 16 16 O 1.21286 * 119.99958 * 354.47770 * 15 14 13 17 17 C 1.50701 * 119.99977 * 174.20149 * 15 14 13 18 18 C 1.53005 * 109.47222 * 180.27380 * 17 15 14 19 19 C 1.50701 * 109.47222 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99760 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00062 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00123 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99819 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47612 * 90.00001 * 23 21 19 25 25 H 1.48503 * 109.47104 * 209.99462 * 23 21 19 26 26 H 1.48503 * 109.47378 * 329.99652 * 23 21 19 27 27 H 1.09000 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47263 * 299.99811 * 1 2 3 29 29 H 1.08998 * 109.46971 * 60.00072 * 1 2 3 30 30 H 1.09002 * 109.46822 * 240.00487 * 2 1 3 31 31 H 1.08998 * 109.46971 * 119.99927 * 2 1 3 32 32 H 1.09002 * 109.46966 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.46855 * 299.99673 * 4 3 2 34 34 H 1.08996 * 109.47204 * 59.99966 * 4 3 2 35 35 H 1.09001 * 109.47334 * 300.00593 * 5 3 2 36 36 H 1.09009 * 109.47106 * 60.00086 * 5 3 2 37 37 H 1.09000 * 109.47379 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.46859 * 60.00220 * 7 6 3 39 39 H 1.09000 * 109.47271 * 300.00287 * 7 6 3 40 40 H 1.08002 * 119.97128 * 359.97438 * 9 8 7 41 41 H 1.07991 * 119.92893 * 179.74573 * 10 9 8 42 42 H 1.08007 * 119.96537 * 179.97438 * 11 10 9 43 43 H 1.07994 * 120.03858 * 180.02562 * 12 11 10 44 44 H 0.97000 * 120.00184 * 334.90916 * 14 13 8 45 45 H 1.09000 * 109.47113 * 300.27819 * 17 15 14 46 46 H 1.09002 * 109.47330 * 60.27865 * 17 15 14 47 47 H 1.09000 * 109.47435 * 300.00242 * 18 17 15 48 48 H 1.09002 * 109.46573 * 60.00021 * 18 17 15 49 49 H 0.97002 * 120.00348 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1992 -1.1816 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0814 1.2211 7 6 2.0923 3.4402 1.3236 8 6 1.6421 4.0114 2.6435 9 6 0.9326 3.2259 3.5309 10 6 0.5143 3.7510 4.7397 11 6 0.8095 5.0619 5.0666 12 6 1.5238 5.8507 4.1864 13 6 1.9450 5.3263 2.9712 14 7 2.6689 6.1228 2.0771 15 6 2.5443 7.4642 2.1166 16 8 1.7316 7.9762 2.8572 17 6 3.4190 8.3282 1.2451 18 6 3.0823 9.8012 1.4856 19 6 3.9575 10.6652 0.6146 20 1 4.6811 10.2093 -0.0449 21 6 3.8344 12.0377 0.6596 22 7 4.5984 12.7917 -0.1001 23 14 2.5833 12.8263 1.8008 24 1 3.2125 13.0881 3.1202 25 1 2.1152 14.1071 1.2128 26 1 1.4274 11.9107 1.9766 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.7929 3.2270 -1.1813 33 1 1.7183 1.7119 -2.1130 34 1 0.3436 2.1978 -1.0920 35 1 3.9994 0.9053 0.7161 36 1 3.8532 0.9571 -1.0571 37 1 3.9281 2.4721 -0.1261 38 1 1.6591 4.0209 0.5092 39 1 3.1797 3.4826 1.2617 40 1 0.7001 2.2019 3.2784 41 1 -0.0438 3.1360 5.4300 42 1 0.4811 5.4694 6.0114 43 1 1.7543 6.8742 4.4425 44 1 3.2604 5.7096 1.4288 45 1 4.4659 8.1499 1.4908 46 1 3.2446 8.0820 0.1977 47 1 2.0355 9.9795 1.2399 48 1 3.2567 10.0474 2.5331 49 1 4.5116 13.7574 -0.0688 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362092820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:34 Heat of formation + Delta-G solvation = -92.927853 kcal Electronic energy + Delta-G solvation = -26838.511359 eV Core-core repulsion = 23150.250506 eV Total energy + Delta-G solvation = -3688.260853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77450 -40.33850 -39.34714 -35.95421 -35.60797 -35.39085 -33.41474 -32.38762 -31.13528 -30.80406 -28.36336 -28.09141 -27.16503 -24.53217 -24.25566 -22.85550 -22.11792 -21.18628 -20.62648 -19.27461 -18.65574 -17.78398 -17.31449 -17.15403 -16.79948 -16.39161 -16.26167 -15.85512 -15.51084 -15.28966 -15.13723 -14.76680 -14.64995 -14.54663 -14.38531 -14.34661 -13.81931 -13.65808 -13.44820 -13.03648 -12.93833 -12.89215 -12.73145 -12.64363 -12.37816 -12.25111 -12.13458 -11.98115 -11.95546 -11.79320 -11.66919 -11.52261 -11.41433 -11.20222 -10.78983 -10.71516 -10.58860 -9.66167 -9.01661 -8.32432 -6.35365 0.26137 0.44784 1.32450 1.34951 1.49110 1.59196 2.00852 2.33819 2.59145 2.85399 3.03509 3.70321 3.77353 3.89192 3.96171 4.07148 4.09308 4.16582 4.29445 4.31257 4.40699 4.43664 4.44290 4.52015 4.58367 4.64141 4.66010 4.71966 4.74919 4.79222 4.92318 4.94342 5.09214 5.11757 5.14748 5.20658 5.28776 5.30892 5.35305 5.38145 5.40920 5.42850 5.54511 5.55781 5.59292 5.64130 6.08822 6.21512 6.33408 6.38452 6.71123 7.09379 7.30067 8.83093 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002812 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.585788 B = 9953.718695 C =11312.233173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.180 4.180 6 O -0.377 6.377 7 C 0.105 3.895 8 C -0.125 4.125 9 C -0.081 4.081 10 C -0.141 4.141 11 C -0.106 4.106 12 C -0.158 4.158 13 C 0.143 3.857 14 N -0.662 5.662 15 C 0.515 3.485 16 O -0.555 6.555 17 C -0.114 4.114 18 C 0.005 3.995 19 C -0.528 4.528 20 H 0.052 0.948 21 C 0.014 3.986 22 N -0.943 5.943 23 Si 0.937 3.063 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.261 1.261 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.423 0.577 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -30.411 2.303 31.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C 0.067 3.933 4 C -0.240 4.240 5 C -0.237 4.237 6 O -0.297 6.297 7 C 0.029 3.971 8 C -0.128 4.128 9 C -0.099 4.099 10 C -0.159 4.159 11 C -0.124 4.124 12 C -0.178 4.178 13 C 0.048 3.952 14 N -0.308 5.308 15 C 0.305 3.695 16 O -0.432 6.432 17 C -0.154 4.154 18 C -0.033 4.033 19 C -0.566 4.566 20 H 0.071 0.929 21 C -0.184 4.184 22 N -0.583 5.583 23 Si 0.761 3.239 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.185 1.185 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.139 0.861 44 H 0.262 0.738 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.030 0.970 48 H 0.029 0.971 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.770 -29.903 2.873 30.794 hybrid contribution 0.122 1.094 -0.119 1.108 sum -6.648 -28.809 2.754 29.694 Atomic orbital electron populations 1.21792 0.95499 1.01780 1.01892 1.21525 0.96558 0.92982 1.03228 1.21700 0.94144 0.93631 0.83779 1.22520 1.01887 1.00771 0.98869 1.22446 0.94991 1.02857 1.03440 1.87893 1.78635 1.23982 1.39230 1.21043 0.98839 0.83751 0.93445 1.19544 1.02941 0.92505 0.97782 1.20999 0.95778 1.00307 0.92845 1.21432 1.01436 0.95304 0.97745 1.21299 0.97377 0.94276 0.99489 1.21394 1.01862 1.01270 0.93305 1.17702 0.96834 0.90453 0.90223 1.43538 1.45175 1.05778 1.36285 1.21483 0.82949 0.82284 0.82749 1.90628 1.37159 1.74106 1.41326 1.21542 0.99722 0.94079 1.00061 1.19235 0.96003 0.92201 0.95905 1.21403 1.20197 0.91566 1.23437 0.92945 1.25784 0.97488 0.98202 0.96901 1.70015 1.41288 1.05527 1.41502 0.85853 0.80476 0.78055 0.79472 1.19416 1.20494 1.18520 0.92062 0.93336 0.92413 0.89145 0.91391 0.92555 0.90125 0.91868 0.91869 0.90111 0.92099 0.91803 0.90799 0.83732 0.83366 0.84372 0.86068 0.73802 0.87285 0.87318 0.97027 0.97115 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.32 71.98 0.67 -1.16 16 2 C -0.11 -1.18 5.23 30.60 0.16 -1.02 16 3 C 0.11 1.41 0.82 -10.80 -0.01 1.40 16 4 C -0.18 -2.37 7.76 71.98 0.56 -1.81 16 5 C -0.18 -2.04 8.25 71.98 0.59 -1.45 16 6 O -0.38 -6.66 8.00 -148.98 -1.19 -7.85 16 7 C 0.11 1.93 4.49 71.24 0.32 2.25 16 8 C -0.13 -2.89 5.90 -19.74 -0.12 -3.01 16 9 C -0.08 -1.73 9.37 22.25 0.21 -1.52 16 10 C -0.14 -2.89 10.04 22.29 0.22 -2.66 16 11 C -0.11 -2.58 10.04 22.25 0.22 -2.36 16 12 C -0.16 -4.80 8.72 22.39 0.20 -4.60 16 13 C 0.14 3.96 6.41 38.15 0.24 4.20 16 14 N -0.66 -17.57 5.17 -303.50 -1.57 -19.14 16 15 C 0.52 17.91 7.63 87.66 0.67 18.58 16 16 O -0.55 -23.72 13.15 -3.05 -0.04 -23.76 16 17 C -0.11 -4.12 5.64 29.85 0.17 -3.95 16 18 C 0.00 0.22 3.33 29.85 0.10 0.32 16 19 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 20 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 21 C 0.01 0.83 5.47 84.65 0.46 1.29 16 22 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 23 Si 0.94 46.37 27.47 68.60 1.88 48.25 16 24 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.26 -12.82 6.54 99.48 0.65 -12.17 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.72 7.82 -2.39 -0.02 0.71 16 29 H 0.06 0.67 6.34 -2.39 -0.02 0.66 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.77 6.54 -2.39 -0.02 0.76 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.90 6.34 -2.39 -0.02 0.88 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.06 0.70 6.54 -2.39 -0.02 0.68 16 38 H 0.06 1.18 6.42 -2.39 -0.02 1.16 16 39 H 0.07 1.14 6.14 -2.39 -0.01 1.12 16 40 H 0.14 2.72 7.00 -2.91 -0.02 2.70 16 41 H 0.15 2.15 8.06 -2.92 -0.02 2.12 16 42 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.12 4.33 5.79 -2.91 -0.02 4.31 16 44 H 0.42 8.10 7.68 -92.71 -0.71 7.38 16 45 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 47 H 0.01 0.58 7.16 -2.39 -0.02 0.56 16 48 H 0.01 0.53 7.53 -2.39 -0.02 0.51 16 49 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -71.92 385.46 4.48 -67.44 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.17 Total: 18.42 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.92 Total: -25.12 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -1.27 Total: -77.38 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.23 Total: -31.61 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.88 Total: 48.25 kcal Total: -71.92 4.48 -67.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362092820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.488 kcal (2) G-P(sol) polarization free energy of solvation -71.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds