Wall clock time and date at job start Tue Mar 31 2020 12:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99962 * 2 1 4 4 H 1.08992 * 109.47380 * 30.00041 * 3 2 1 5 5 C 1.52996 * 109.47152 * 150.00752 * 3 2 1 6 6 C 1.53003 * 109.46507 * 296.02257 * 5 3 2 7 7 C 1.52998 * 109.47419 * 294.39685 * 6 5 3 8 8 C 1.53010 * 109.46710 * 174.40051 * 6 5 3 9 9 C 1.50702 * 109.46839 * 269.99990 * 3 2 1 10 10 O 1.21280 * 120.00354 * 355.00711 * 9 3 2 11 11 N 1.34777 * 119.99734 * 174.99787 * 9 3 2 12 12 C 1.46498 * 119.99951 * 180.02562 * 11 9 3 13 13 H 1.09003 * 109.47539 * 325.00589 * 12 11 9 14 14 C 1.53001 * 109.47661 * 205.00402 * 12 11 9 15 15 C 1.50707 * 109.46999 * 64.99393 * 14 12 11 16 16 H 1.07996 * 119.99871 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99592 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00422 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99570 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47088 * 89.99819 * 19 17 15 21 21 H 1.48499 * 109.47060 * 209.99964 * 19 17 15 22 22 H 1.48497 * 109.47154 * 330.00215 * 19 17 15 23 23 C 1.50701 * 109.47421 * 85.00419 * 12 11 9 24 24 C 1.38235 * 120.00182 * 39.72170 * 23 12 11 25 25 C 1.38234 * 120.00264 * 179.79329 * 24 23 12 26 26 C 1.38230 * 119.99635 * 0.44089 * 25 24 23 27 27 C 1.38235 * 120.00371 * 359.81687 * 26 25 24 28 28 C 1.38225 * 119.99928 * 359.97423 * 27 26 25 29 29 H 1.09008 * 109.46642 * 299.99777 * 1 2 3 30 30 H 1.08997 * 109.47225 * 59.99553 * 1 2 3 31 31 H 1.08992 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47272 * 176.03113 * 5 3 2 33 33 H 1.08995 * 109.47575 * 56.02324 * 5 3 2 34 34 H 1.09001 * 109.47138 * 54.40352 * 6 5 3 35 35 H 1.09001 * 109.47510 * 300.00439 * 7 6 5 36 36 H 1.08998 * 109.46584 * 60.00199 * 7 6 5 37 37 H 1.09002 * 109.47135 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46751 * 175.07426 * 8 6 5 39 39 H 1.09000 * 109.47186 * 295.07541 * 8 6 5 40 40 H 1.09000 * 109.47273 * 55.07595 * 8 6 5 41 41 H 0.97001 * 120.00594 * 0.02562 * 11 9 3 42 42 H 1.08994 * 109.47864 * 185.00320 * 14 12 11 43 43 H 1.09003 * 109.46579 * 305.00436 * 14 12 11 44 44 H 0.96992 * 119.99873 * 179.97438 * 18 17 15 45 45 H 1.07998 * 119.99440 * 0.02562 * 24 23 12 46 46 H 1.08001 * 119.99950 * 180.27854 * 25 24 23 47 47 H 1.08003 * 119.99829 * 179.83475 * 26 25 24 48 48 H 1.08005 * 119.99973 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.00314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3590 1.2633 0.7211 6 6 3.1407 0.8933 2.1896 7 6 2.3589 2.0091 2.8859 8 6 4.4958 0.7143 2.8772 9 6 2.2145 1.7643 -1.4209 10 8 1.9790 1.0106 -2.3414 11 7 2.6588 3.0124 -1.6686 12 6 2.8569 3.4587 -3.0498 13 1 3.2073 2.6227 -3.6552 14 6 3.8966 4.5807 -3.0793 15 6 5.2326 4.0392 -2.6397 16 1 5.3303 2.9988 -2.3671 17 6 6.3300 4.8722 -2.5856 18 7 6.2109 6.1393 -2.9171 19 14 7.9861 4.2008 -2.0415 20 1 8.7322 3.7043 -3.2255 21 1 8.7651 5.2796 -1.3821 22 1 7.7775 3.0849 -1.0842 23 6 1.5520 3.9685 -3.6051 24 6 0.7072 4.7179 -2.8078 25 6 -0.4878 5.1892 -3.3184 26 6 -0.8422 4.9033 -4.6236 27 6 0.0000 4.1495 -5.4193 28 6 1.1969 3.6819 -4.9101 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.8345 2.2421 0.6599 33 1 3.9997 0.5179 0.2500 34 1 2.5769 -0.0376 2.2498 35 1 2.9227 2.9400 2.8256 36 1 1.3936 2.1366 2.3959 37 1 2.2030 1.7453 3.9319 38 1 4.3423 0.5372 3.9418 39 1 5.0162 -0.1369 2.4385 40 1 5.0940 1.6153 2.7414 41 1 2.8474 3.6152 -0.9325 42 1 3.9792 4.9732 -4.0927 43 1 3.5885 5.3793 -2.4044 44 1 6.9828 6.7252 -2.8787 45 1 0.9826 4.9383 -1.7871 46 1 -1.1457 5.7784 -2.6968 47 1 -1.7771 5.2693 -5.0218 48 1 -0.2772 3.9259 -6.4390 49 1 1.8552 3.0933 -5.5318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415338177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:13 Heat of formation + Delta-G solvation = -84.398145 kcal Electronic energy + Delta-G solvation = -27915.938273 eV Core-core repulsion = 24228.047296 eV Total energy + Delta-G solvation = -3687.890977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97561 -38.84275 -37.35889 -35.89852 -35.04955 -32.75730 -31.48266 -30.51679 -29.81445 -28.69394 -27.22902 -26.29294 -25.17833 -23.94905 -22.30890 -21.96704 -20.36344 -19.98697 -19.65557 -17.26843 -16.95917 -16.46758 -16.16459 -15.80668 -15.16163 -14.85403 -14.62936 -14.58253 -14.38722 -14.06132 -13.81280 -13.65954 -13.24305 -13.02976 -12.72024 -12.63328 -12.45153 -12.26018 -12.14075 -12.11515 -11.71286 -11.58810 -11.33046 -11.13939 -10.95007 -10.88780 -10.74990 -10.64477 -10.59509 -10.48364 -10.47522 -10.28997 -9.79046 -9.31773 -8.90269 -8.56447 -8.46799 -8.40887 -8.19087 -6.10210 -4.13639 1.76161 1.78247 3.05962 3.26664 3.33923 3.36793 3.53151 3.95892 4.22610 4.38856 4.77111 4.87624 4.93439 5.03746 5.20191 5.24871 5.25284 5.26268 5.28093 5.37038 5.40741 5.50445 5.55379 5.61301 5.70105 5.72315 5.75259 5.85157 5.88836 5.92412 5.92965 6.00541 6.16749 6.19820 6.29700 6.34217 6.42182 6.42732 6.57352 6.82451 6.83696 6.90540 7.06794 7.13009 7.38642 7.48162 7.61941 7.86554 8.12513 8.25068 8.76994 8.92403 9.51534 11.00296 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.006333 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.771835 B = 4420.092717 C = 7545.469309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.075 3.925 4 H 0.083 0.917 5 C -0.110 4.110 6 C -0.093 4.093 7 C -0.151 4.151 8 C -0.148 4.148 9 C 0.487 3.513 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.183 3.817 13 H 0.086 0.914 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.070 4.070 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.400 0.600 42 H 0.034 0.966 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 -5.390 8.165 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.014 3.986 4 H 0.100 0.900 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.209 4.209 8 C -0.205 4.205 9 C 0.271 3.729 10 O -0.413 6.413 11 N -0.349 5.349 12 C 0.079 3.921 13 H 0.104 0.896 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.071 4.071 24 C -0.128 4.128 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.140 4.140 28 C -0.127 4.127 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.234 0.766 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.974 -5.950 7.491 15.327 hybrid contribution 0.844 0.363 0.481 1.037 sum -11.131 -5.587 7.972 14.787 Atomic orbital electron populations 1.22797 0.81227 1.02742 0.99797 1.87963 1.19530 1.25455 1.94437 1.22140 0.97189 0.86419 0.92883 0.89960 1.21756 0.94315 1.03952 0.94733 1.21065 0.96912 0.99393 0.93812 1.21937 0.99962 0.98888 1.00070 1.21835 0.96705 1.02077 0.99874 1.21230 0.77638 0.82275 0.91721 1.90662 1.50695 1.53900 1.46012 1.46016 1.65845 1.13656 1.09404 1.20245 0.91113 0.99291 0.81423 0.89578 1.19386 0.91611 0.91647 0.98636 1.21130 0.93307 0.96050 1.45277 0.92338 1.24979 0.98977 0.94799 0.95322 1.69955 1.30559 1.04360 1.48188 0.86619 0.84035 0.78603 0.78943 1.20645 1.21266 1.19768 1.20568 0.96478 0.95996 0.94088 1.20900 0.94204 0.97929 0.99738 1.21036 0.97034 1.00512 0.95748 1.20992 0.99643 1.00160 0.94560 1.21046 0.94828 0.98730 0.99434 1.21028 0.96491 0.99744 0.95419 0.94335 0.93754 0.89627 0.89311 0.90324 0.90489 0.92244 0.92967 0.92782 0.92861 0.92642 0.92385 0.76596 0.94816 0.95750 0.92877 0.86625 0.86751 0.86841 0.86599 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.36 -5.38 9.29 -55.09 -0.51 -5.89 16 3 C 0.08 1.07 2.38 -27.88 -0.07 1.00 16 4 H 0.08 0.98 6.05 -51.93 -0.31 0.66 16 5 C -0.11 -1.46 4.36 -26.73 -0.12 -1.58 16 6 C -0.09 -1.02 2.87 -90.61 -0.26 -1.28 16 7 C -0.15 -1.43 8.96 37.16 0.33 -1.10 16 8 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 9 C 0.49 8.79 7.09 -10.98 -0.08 8.71 16 10 O -0.54 -11.75 16.17 -14.30 -0.23 -11.99 16 11 N -0.70 -12.46 3.93 -54.93 -0.22 -12.67 16 12 C 0.18 3.73 2.12 -69.08 -0.15 3.58 16 13 H 0.09 1.94 7.44 -51.93 -0.39 1.56 16 14 C 0.02 0.58 4.50 -27.88 -0.13 0.46 16 15 C -0.52 -13.55 8.84 -34.44 -0.30 -13.85 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 24 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 25 C -0.13 -1.83 10.05 -39.59 -0.40 -2.23 16 26 C -0.14 -1.92 10.05 -39.59 -0.40 -2.31 16 27 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 28 C -0.11 -1.90 9.67 -39.58 -0.38 -2.28 16 29 H 0.04 0.37 8.09 -51.92 -0.42 -0.05 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.18 7.80 -51.93 -0.40 0.78 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.87 7.65 -51.93 -0.40 0.48 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.47 6.50 -51.93 -0.34 0.13 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.40 6.45 8.32 -40.82 -0.34 6.11 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.12 1.78 7.71 -52.49 -0.40 1.37 16 46 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 48 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 49 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -31.42 403.38 -9.51 -40.94 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.46 Total: 7.61 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.89 Total: -15.31 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.52 Total: -37.25 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.74 Total: -17.88 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.42 -9.51 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415338177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.462 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds