Wall clock time and date at job start Tue Mar 31 2020 12:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99962 * 2 1 4 4 H 1.08992 * 109.47380 * 30.00041 * 3 2 1 5 5 C 1.52996 * 109.47152 * 150.00752 * 3 2 1 6 6 C 1.53003 * 109.46507 * 296.02257 * 5 3 2 7 7 C 1.52998 * 109.47419 * 294.39685 * 6 5 3 8 8 C 1.53010 * 109.46710 * 174.40051 * 6 5 3 9 9 C 1.50702 * 109.46839 * 269.99990 * 3 2 1 10 10 O 1.21280 * 120.00354 * 355.00711 * 9 3 2 11 11 N 1.34777 * 119.99734 * 174.99787 * 9 3 2 12 12 C 1.46498 * 119.99951 * 180.02562 * 11 9 3 13 13 H 1.09003 * 109.47539 * 325.00589 * 12 11 9 14 14 C 1.53001 * 109.47661 * 205.00402 * 12 11 9 15 15 C 1.50707 * 109.46999 * 64.99393 * 14 12 11 16 16 H 1.07996 * 119.99871 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99592 * 180.02562 * 15 14 12 18 18 N 1.31513 * 120.00422 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99570 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47088 * 89.99819 * 19 17 15 21 21 H 1.48499 * 109.47060 * 209.99964 * 19 17 15 22 22 H 1.48497 * 109.47154 * 330.00215 * 19 17 15 23 23 C 1.50701 * 109.47421 * 85.00419 * 12 11 9 24 24 C 1.38235 * 120.00182 * 39.72170 * 23 12 11 25 25 C 1.38234 * 120.00264 * 179.79329 * 24 23 12 26 26 C 1.38230 * 119.99635 * 0.44089 * 25 24 23 27 27 C 1.38235 * 120.00371 * 359.81687 * 26 25 24 28 28 C 1.38225 * 119.99928 * 359.97423 * 27 26 25 29 29 H 1.09008 * 109.46642 * 299.99777 * 1 2 3 30 30 H 1.08997 * 109.47225 * 59.99553 * 1 2 3 31 31 H 1.08992 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47272 * 176.03113 * 5 3 2 33 33 H 1.08995 * 109.47575 * 56.02324 * 5 3 2 34 34 H 1.09001 * 109.47138 * 54.40352 * 6 5 3 35 35 H 1.09001 * 109.47510 * 300.00439 * 7 6 5 36 36 H 1.08998 * 109.46584 * 60.00199 * 7 6 5 37 37 H 1.09002 * 109.47135 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46751 * 175.07426 * 8 6 5 39 39 H 1.09000 * 109.47186 * 295.07541 * 8 6 5 40 40 H 1.09000 * 109.47273 * 55.07595 * 8 6 5 41 41 H 0.97001 * 120.00594 * 0.02562 * 11 9 3 42 42 H 1.08994 * 109.47864 * 185.00320 * 14 12 11 43 43 H 1.09003 * 109.46579 * 305.00436 * 14 12 11 44 44 H 0.96992 * 119.99873 * 179.97438 * 18 17 15 45 45 H 1.07998 * 119.99440 * 0.02562 * 24 23 12 46 46 H 1.08001 * 119.99950 * 180.27854 * 25 24 23 47 47 H 1.08003 * 119.99829 * 179.83475 * 26 25 24 48 48 H 1.08005 * 119.99973 * 179.97438 * 27 26 25 49 49 H 1.07998 * 120.00314 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 3.3590 1.2633 0.7211 6 6 3.1407 0.8933 2.1896 7 6 2.3589 2.0091 2.8859 8 6 4.4958 0.7143 2.8772 9 6 2.2145 1.7643 -1.4209 10 8 1.9790 1.0106 -2.3414 11 7 2.6588 3.0124 -1.6686 12 6 2.8569 3.4587 -3.0498 13 1 3.2073 2.6227 -3.6552 14 6 3.8966 4.5807 -3.0793 15 6 5.2326 4.0392 -2.6397 16 1 5.3303 2.9988 -2.3671 17 6 6.3300 4.8722 -2.5856 18 7 6.2109 6.1393 -2.9171 19 14 7.9861 4.2008 -2.0415 20 1 8.7322 3.7043 -3.2255 21 1 8.7651 5.2796 -1.3821 22 1 7.7775 3.0849 -1.0842 23 6 1.5520 3.9685 -3.6051 24 6 0.7072 4.7179 -2.8078 25 6 -0.4878 5.1892 -3.3184 26 6 -0.8422 4.9033 -4.6236 27 6 0.0000 4.1495 -5.4193 28 6 1.1969 3.6819 -4.9101 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.8345 2.2421 0.6599 33 1 3.9997 0.5179 0.2500 34 1 2.5769 -0.0376 2.2498 35 1 2.9227 2.9400 2.8256 36 1 1.3936 2.1366 2.3959 37 1 2.2030 1.7453 3.9319 38 1 4.3423 0.5372 3.9418 39 1 5.0162 -0.1369 2.4385 40 1 5.0940 1.6153 2.7414 41 1 2.8474 3.6152 -0.9325 42 1 3.9792 4.9732 -4.0927 43 1 3.5885 5.3793 -2.4044 44 1 6.9828 6.7252 -2.8787 45 1 0.9826 4.9383 -1.7871 46 1 -1.1457 5.7784 -2.6968 47 1 -1.7771 5.2693 -5.0218 48 1 -0.2772 3.9259 -6.4390 49 1 1.8552 3.0933 -5.5318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415338177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:12 Heat of formation + Delta-G solvation = -100.886754 kcal Electronic energy + Delta-G solvation = -27916.653272 eV Core-core repulsion = 24228.047296 eV Total energy + Delta-G solvation = -3688.605977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36705 -40.08581 -38.62046 -36.96087 -36.57200 -34.72755 -32.89241 -31.74048 -30.96958 -30.41175 -28.00149 -27.31001 -26.81227 -25.25695 -23.80108 -23.37458 -21.78468 -21.18623 -20.84484 -18.78654 -18.40314 -17.98685 -17.50894 -17.09051 -16.51639 -16.38124 -16.16602 -15.72006 -15.53740 -15.24554 -15.09154 -14.74307 -14.52528 -14.29396 -14.20446 -14.08524 -13.69404 -13.54849 -13.46737 -13.21783 -12.99033 -12.90840 -12.66982 -12.61515 -12.46464 -12.28740 -12.15257 -11.90218 -11.87120 -11.60664 -11.51597 -11.46005 -11.43145 -11.32610 -10.61407 -10.24130 -9.99591 -9.77200 -9.52834 -8.20390 -6.30313 0.49566 0.54288 1.38752 1.41032 1.50742 1.62957 2.19747 2.39664 2.81603 2.96461 3.13980 3.67077 3.83406 3.89012 4.00264 4.01969 4.08961 4.17887 4.19947 4.30891 4.38765 4.43775 4.51949 4.56652 4.64203 4.71732 4.75201 4.77497 4.80818 4.82427 4.90073 5.03707 5.08779 5.11076 5.11833 5.18542 5.26227 5.32446 5.42458 5.47573 5.56550 5.59281 5.59856 5.62745 5.77532 5.87468 6.04968 6.15197 6.19869 6.68495 6.81994 7.32208 7.38742 8.90271 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.006333 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.771835 B = 4420.092717 C = 7545.469309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.086 3.914 4 H 0.114 0.886 5 C -0.108 4.108 6 C -0.086 4.086 7 C -0.150 4.150 8 C -0.148 4.148 9 C 0.483 3.517 10 O -0.580 6.580 11 N -0.691 5.691 12 C 0.199 3.801 13 H 0.052 0.948 14 C 0.039 3.961 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.925 5.925 19 Si 0.952 3.048 20 H -0.281 1.281 21 H -0.279 1.279 22 H -0.264 1.264 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.408 0.592 42 H 0.002 0.998 43 H 0.015 0.985 44 H 0.264 0.736 45 H 0.123 0.877 46 H 0.149 0.851 47 H 0.152 0.848 48 H 0.142 0.858 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 -5.085 10.037 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.294 6.294 3 C 0.025 3.975 4 H 0.131 0.869 5 C -0.146 4.146 6 C -0.105 4.105 7 C -0.207 4.207 8 C -0.205 4.205 9 C 0.270 3.730 10 O -0.460 6.460 11 N -0.342 5.342 12 C 0.094 3.906 13 H 0.071 0.929 14 C 0.002 3.998 15 C -0.566 4.566 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.564 5.564 19 Si 0.777 3.223 20 H -0.207 1.207 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.099 4.099 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.244 0.756 42 H 0.020 0.980 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.141 0.859 46 H 0.167 0.833 47 H 0.170 0.830 48 H 0.160 0.840 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.770 -5.643 9.388 17.595 hybrid contribution 1.327 0.267 -0.172 1.364 sum -12.443 -5.376 9.216 16.391 Atomic orbital electron populations 1.22998 0.79611 1.04105 1.00334 1.87946 1.21413 1.25757 1.94274 1.22144 0.98356 0.86926 0.90068 0.86865 1.21763 0.93342 1.03114 0.96384 1.21016 0.97508 0.99989 0.91986 1.21932 0.99866 0.98081 1.00820 1.21840 0.96239 1.01540 1.00881 1.22043 0.76347 0.81448 0.93172 1.90634 1.52634 1.54916 1.47838 1.45900 1.65581 1.14097 1.08621 1.19719 0.91693 0.96687 0.82522 0.92943 1.19120 0.92086 0.92363 0.96223 1.21366 0.94535 0.95739 1.44919 0.92947 1.25733 1.02420 0.94994 0.95372 1.70061 1.31625 1.05499 1.49259 0.85645 0.79765 0.78301 0.78565 1.20728 1.20475 1.18823 1.20445 0.96247 0.98121 0.95078 1.21083 0.94922 0.97936 1.00025 1.21453 0.96349 0.99783 0.96463 1.21476 1.00500 0.98572 0.94140 1.21379 0.93730 0.98158 1.00905 1.21167 0.97998 1.00916 0.95329 0.91277 0.95561 0.88045 0.89551 0.92656 0.90588 0.92278 0.92321 0.91281 0.91077 0.93350 0.92905 0.75554 0.97999 0.96678 0.92719 0.85866 0.83336 0.83042 0.83974 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.81 113.37 1.23 1.79 16 2 O -0.38 -11.06 9.29 -129.99 -1.21 -12.27 16 3 C 0.09 2.41 2.38 29.85 0.07 2.48 16 4 H 0.11 2.45 6.05 -2.39 -0.01 2.43 16 5 C -0.11 -2.84 4.36 30.59 0.13 -2.71 16 6 C -0.09 -1.75 2.87 -10.79 -0.03 -1.78 16 7 C -0.15 -2.42 8.96 71.98 0.65 -1.77 16 8 C -0.15 -2.85 9.19 71.99 0.66 -2.19 16 9 C 0.48 17.92 7.09 87.66 0.62 18.54 16 10 O -0.58 -26.62 16.17 15.96 0.26 -26.36 16 11 N -0.69 -25.53 3.93 -446.09 -1.75 -27.28 16 12 C 0.20 8.58 2.12 44.25 0.09 8.68 16 13 H 0.05 2.58 7.44 -2.39 -0.02 2.56 16 14 C 0.04 1.98 4.50 29.85 0.13 2.11 16 15 C -0.53 -28.51 8.84 25.60 0.23 -28.28 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.75 5.46 84.65 0.46 1.21 16 18 N -0.92 -53.57 13.29 21.45 0.28 -53.28 16 19 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 23 C -0.10 -3.76 4.91 -19.86 -0.10 -3.86 16 24 C -0.12 -3.97 9.33 22.27 0.21 -3.76 16 25 C -0.12 -3.27 10.05 22.27 0.22 -3.05 16 26 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 27 C -0.12 -3.59 10.05 22.27 0.22 -3.37 16 28 C -0.14 -4.93 9.67 22.27 0.22 -4.72 16 29 H 0.07 1.11 8.09 -2.38 -0.02 1.09 16 30 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 2.28 7.80 -2.39 -0.02 2.26 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.58 7.65 -2.39 -0.02 1.56 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.87 6.50 -2.39 -0.02 0.85 16 37 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 13.43 8.32 -92.71 -0.77 12.66 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.12 3.70 7.71 -2.91 -0.02 3.68 16 46 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 47 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 48 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 49 H 0.11 4.02 8.04 -2.91 -0.02 4.00 16 Total: -1.00 -70.69 403.38 4.99 -65.70 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: 0.14 Total: 31.98 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.24 Total: -23.72 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.47 Total: -80.56 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.95 Total: -38.63 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.69 4.99 -65.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415338177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.185 kcal (2) G-P(sol) polarization free energy of solvation -70.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds