Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00411 * 2 1 4 4 H 1.09002 * 109.46792 * 30.00798 * 3 2 1 5 5 C 1.53004 * 109.46678 * 150.00030 * 3 2 1 6 6 C 1.52994 * 109.47391 * 296.62734 * 5 3 2 7 7 C 1.53002 * 109.47198 * 174.15270 * 6 5 3 8 8 C 1.52996 * 109.47572 * 294.15523 * 6 5 3 9 9 C 1.50688 * 109.47482 * 270.00413 * 3 2 1 10 10 O 1.21285 * 120.00162 * 354.99643 * 9 3 2 11 11 N 1.34781 * 120.00320 * 174.99974 * 9 3 2 12 12 C 1.46496 * 120.00547 * 180.02562 * 11 9 3 13 13 H 1.09007 * 109.46937 * 34.99509 * 12 11 9 14 14 C 1.52994 * 109.47597 * 155.00064 * 12 11 9 15 15 C 1.50706 * 109.46602 * 295.00044 * 14 12 11 16 16 H 1.08000 * 120.00356 * 359.97438 * 15 14 12 17 17 C 1.37882 * 119.99862 * 179.97438 * 15 14 12 18 18 N 1.31523 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00284 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47027 * 59.99744 * 19 17 15 21 21 H 1.48500 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46872 * 300.00108 * 19 17 15 23 23 C 1.50698 * 109.47009 * 275.00174 * 12 11 9 24 24 C 1.38230 * 120.00254 * 319.72257 * 23 12 11 25 25 C 1.38235 * 120.00472 * 179.81278 * 24 23 12 26 26 C 1.38235 * 119.99555 * 0.39669 * 25 24 23 27 27 C 1.38227 * 120.00275 * 359.85682 * 26 25 24 28 28 C 1.38234 * 119.99991 * 359.95531 * 27 26 25 29 29 H 1.09002 * 109.46882 * 299.99618 * 1 2 3 30 30 H 1.08992 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47051 * 59.98956 * 1 2 3 32 32 H 1.08996 * 109.47353 * 56.63208 * 5 3 2 33 33 H 1.09003 * 109.46757 * 176.63076 * 5 3 2 34 34 H 1.09004 * 109.47121 * 54.15439 * 6 5 3 35 35 H 1.08995 * 109.47362 * 176.57739 * 7 6 5 36 36 H 1.09003 * 109.47285 * 296.58371 * 7 6 5 37 37 H 1.09005 * 109.46780 * 56.57945 * 7 6 5 38 38 H 1.08997 * 109.47223 * 59.99786 * 8 6 5 39 39 H 1.08998 * 109.47331 * 179.97438 * 8 6 5 40 40 H 1.09007 * 109.47268 * 299.99832 * 8 6 5 41 41 H 0.97000 * 119.99459 * 0.02562 * 11 9 3 42 42 H 1.08999 * 109.46936 * 54.99728 * 14 12 11 43 43 H 1.08994 * 109.47484 * 175.00277 * 14 12 11 44 44 H 0.96990 * 120.00080 * 179.97438 * 18 17 15 45 45 H 1.08004 * 119.99542 * 0.02562 * 24 23 12 46 46 H 1.07994 * 120.00308 * 180.23356 * 25 24 23 47 47 H 1.08003 * 119.99621 * 179.83807 * 26 25 24 48 48 H 1.08004 * 120.00445 * 179.97438 * 27 26 25 49 49 H 1.08003 * 119.99976 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2630 0.7213 6 6 3.1421 0.8784 2.1861 7 6 4.4978 0.6936 2.8710 8 6 2.3600 1.9865 2.8940 9 6 2.2146 1.7644 -1.4207 10 8 1.9792 1.0107 -2.3413 11 7 2.6590 3.0125 -1.6684 12 6 2.8571 3.4589 -3.0496 13 1 2.0953 3.0122 -3.6886 14 6 2.7466 4.9835 -3.1136 15 6 1.3430 5.4008 -2.7571 16 1 0.6037 4.6533 -2.5101 17 6 1.0028 6.7369 -2.7464 18 7 1.9033 7.6473 -3.0468 19 14 -0.7367 7.2543 -2.3039 20 1 -1.0561 6.7917 -0.9294 21 1 -0.8437 8.7342 -2.3650 22 1 -1.6929 6.6483 -3.2649 23 6 4.2229 3.0339 -3.5239 24 6 5.3079 3.1191 -2.6718 25 6 6.5601 2.7256 -3.1055 26 6 6.7286 2.2545 -4.3942 27 6 5.6445 2.1742 -5.2480 28 6 4.3917 2.5641 -4.8130 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8899 32 1 4.0035 0.5252 0.2435 33 1 3.8298 2.2447 0.6693 34 1 2.5790 -0.0535 2.2376 35 1 4.3444 0.4794 3.9286 36 1 5.0299 -0.1361 2.4056 37 1 5.0850 1.6060 2.7666 38 1 1.3943 2.1182 2.4062 39 1 2.2051 1.7123 3.9375 40 1 2.9231 2.9185 2.8426 41 1 2.8477 3.6151 -0.9321 42 1 3.4483 5.4286 -2.4081 43 1 2.9813 5.3228 -4.1225 44 1 1.6638 8.5871 -3.0397 45 1 5.1768 3.4899 -1.6659 46 1 7.4071 2.7886 -2.4386 47 1 7.7074 1.9495 -4.7339 48 1 5.7762 1.8066 -6.2550 49 1 3.5447 2.5017 -5.4802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415338180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = -84.703837 kcal Electronic energy + Delta-G solvation = -27911.481824 eV Core-core repulsion = 24223.577592 eV Total energy + Delta-G solvation = -3687.904233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.97701 -38.81877 -37.36298 -35.94017 -35.04692 -32.77015 -31.47916 -30.48026 -29.85896 -28.67647 -27.28473 -26.26948 -25.20522 -23.96825 -22.28671 -21.94410 -20.36709 -20.06165 -19.64613 -17.29933 -16.87179 -16.56823 -16.16113 -15.72479 -15.21649 -14.83899 -14.65515 -14.61754 -14.36395 -14.08068 -13.80290 -13.67520 -13.26074 -13.01555 -12.77005 -12.57581 -12.48038 -12.33999 -12.17637 -12.11432 -11.74083 -11.58799 -11.34974 -11.15117 -10.98543 -10.92385 -10.73349 -10.69568 -10.64455 -10.53454 -10.46620 -10.26075 -9.79588 -9.35017 -8.90449 -8.54208 -8.46731 -8.40468 -8.16399 -6.11575 -4.15255 1.79381 1.81764 3.06959 3.25235 3.31140 3.33399 3.52176 3.95991 4.25190 4.37048 4.71514 4.80901 4.86880 5.05872 5.20668 5.25271 5.27849 5.28480 5.28995 5.38527 5.42576 5.53038 5.54288 5.55749 5.63609 5.65084 5.76235 5.79204 5.87116 5.91589 5.92277 5.95152 6.09309 6.17522 6.22502 6.33396 6.36707 6.44504 6.57785 6.85674 6.86598 6.91303 7.08072 7.14133 7.41799 7.47128 7.61864 7.84734 8.12655 8.23686 8.77184 8.90129 9.49631 10.98874 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.005522 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.744178 B = 5069.500289 C = 7246.455071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.072 3.928 4 H 0.087 0.913 5 C -0.106 4.106 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.152 4.152 9 C 0.487 3.513 10 O -0.536 6.536 11 N -0.698 5.698 12 C 0.184 3.816 13 H 0.085 0.915 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.071 4.071 24 C -0.107 4.107 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.400 0.600 42 H 0.025 0.975 43 H 0.034 0.966 44 H 0.262 0.738 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -11.462 8.705 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.011 3.989 4 H 0.104 0.896 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.203 4.203 8 C -0.210 4.210 9 C 0.272 3.728 10 O -0.413 6.413 11 N -0.349 5.349 12 C 0.080 3.920 13 H 0.103 0.897 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.127 4.127 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.234 0.766 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.131 0.869 48 H 0.134 0.866 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.232 -11.978 8.022 15.337 hybrid contribution -1.090 1.018 0.447 1.557 sum 4.142 -10.960 8.470 14.458 Atomic orbital electron populations 1.22817 0.80990 1.02735 1.00113 1.87931 1.19746 1.25350 1.94474 1.22142 0.97162 0.86630 0.92974 0.89578 1.21703 0.94523 1.03107 0.95008 1.21070 0.96900 0.99635 0.93669 1.21826 0.96673 1.01760 1.00090 1.21941 1.00217 0.98697 1.00117 1.21215 0.77577 0.82328 0.91712 1.90664 1.50684 1.53934 1.45993 1.46020 1.66179 1.13295 1.09436 1.20235 0.91260 0.98730 0.81793 0.89668 1.19381 0.97688 0.85558 0.98647 1.21082 0.95806 0.91864 1.47163 0.92556 1.24982 0.97118 0.96738 0.95226 1.69946 1.33657 1.01001 1.48373 0.86669 0.85001 0.77411 0.78997 1.20291 1.21262 1.20217 1.20542 0.96535 0.96116 0.93985 1.20887 0.92235 0.99810 0.99617 1.21033 0.97018 1.00120 0.96113 1.20989 0.98343 1.01594 0.94380 1.21035 0.92988 1.00699 0.99336 1.21017 0.97255 0.98581 0.95833 0.94201 0.89608 0.93531 0.90512 0.90001 0.90335 0.92779 0.92695 0.92608 0.92707 0.92731 0.92309 0.76598 0.95712 0.94782 0.92787 0.86614 0.86741 0.86860 0.86637 0.86257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.81 101.05 1.09 1.47 16 2 O -0.36 -5.40 9.26 -55.09 -0.51 -5.91 16 3 C 0.07 1.03 2.38 -27.89 -0.07 0.97 16 4 H 0.09 1.11 6.09 -51.93 -0.32 0.79 16 5 C -0.11 -1.25 4.35 -26.73 -0.12 -1.37 16 6 C -0.09 -0.94 2.86 -90.62 -0.26 -1.20 16 7 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 8 C -0.15 -1.42 8.97 37.16 0.33 -1.09 16 9 C 0.49 8.80 7.09 -10.99 -0.08 8.72 16 10 O -0.54 -11.76 16.17 -14.31 -0.23 -11.99 16 11 N -0.70 -12.49 3.96 -54.94 -0.22 -12.71 16 12 C 0.18 3.75 2.11 -69.09 -0.15 3.60 16 13 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 14 C 0.02 0.58 4.49 -27.88 -0.13 0.46 16 15 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.65 5.46 -17.81 -0.10 1.56 16 18 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 24 C -0.11 -1.80 9.32 -39.59 -0.37 -2.17 16 25 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 26 C -0.13 -1.94 10.05 -39.59 -0.40 -2.34 16 27 C -0.12 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.11 -1.92 9.67 -39.58 -0.38 -2.30 16 29 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.08 0.85 7.62 -51.93 -0.40 0.45 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.53 6.52 -51.93 -0.34 0.19 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.40 6.48 8.32 -40.82 -0.34 6.14 16 42 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 1.79 7.73 -52.48 -0.41 1.38 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 48 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 49 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 403.43 15.07 6.08 6.08 Total: -1.00 -31.41 403.43 -9.52 -40.93 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.47 Total: 7.30 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.88 Total: -14.89 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.52 Total: -37.25 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.74 Total: -17.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.41 -9.52 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415338180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.778 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds