Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00411 * 2 1 4 4 H 1.09002 * 109.46792 * 30.00798 * 3 2 1 5 5 C 1.53004 * 109.46678 * 150.00030 * 3 2 1 6 6 C 1.52994 * 109.47391 * 296.62734 * 5 3 2 7 7 C 1.53002 * 109.47198 * 174.15270 * 6 5 3 8 8 C 1.52996 * 109.47572 * 294.15523 * 6 5 3 9 9 C 1.50688 * 109.47482 * 270.00413 * 3 2 1 10 10 O 1.21285 * 120.00162 * 354.99643 * 9 3 2 11 11 N 1.34781 * 120.00320 * 174.99974 * 9 3 2 12 12 C 1.46496 * 120.00547 * 180.02562 * 11 9 3 13 13 H 1.09007 * 109.46937 * 34.99509 * 12 11 9 14 14 C 1.52994 * 109.47597 * 155.00064 * 12 11 9 15 15 C 1.50706 * 109.46602 * 295.00044 * 14 12 11 16 16 H 1.08000 * 120.00356 * 359.97438 * 15 14 12 17 17 C 1.37882 * 119.99862 * 179.97438 * 15 14 12 18 18 N 1.31523 * 119.99968 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00284 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47027 * 59.99744 * 19 17 15 21 21 H 1.48500 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46872 * 300.00108 * 19 17 15 23 23 C 1.50698 * 109.47009 * 275.00174 * 12 11 9 24 24 C 1.38230 * 120.00254 * 319.72257 * 23 12 11 25 25 C 1.38235 * 120.00472 * 179.81278 * 24 23 12 26 26 C 1.38235 * 119.99555 * 0.39669 * 25 24 23 27 27 C 1.38227 * 120.00275 * 359.85682 * 26 25 24 28 28 C 1.38234 * 119.99991 * 359.95531 * 27 26 25 29 29 H 1.09002 * 109.46882 * 299.99618 * 1 2 3 30 30 H 1.08992 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47051 * 59.98956 * 1 2 3 32 32 H 1.08996 * 109.47353 * 56.63208 * 5 3 2 33 33 H 1.09003 * 109.46757 * 176.63076 * 5 3 2 34 34 H 1.09004 * 109.47121 * 54.15439 * 6 5 3 35 35 H 1.08995 * 109.47362 * 176.57739 * 7 6 5 36 36 H 1.09003 * 109.47285 * 296.58371 * 7 6 5 37 37 H 1.09005 * 109.46780 * 56.57945 * 7 6 5 38 38 H 1.08997 * 109.47223 * 59.99786 * 8 6 5 39 39 H 1.08998 * 109.47331 * 179.97438 * 8 6 5 40 40 H 1.09007 * 109.47268 * 299.99832 * 8 6 5 41 41 H 0.97000 * 119.99459 * 0.02562 * 11 9 3 42 42 H 1.08999 * 109.46936 * 54.99728 * 14 12 11 43 43 H 1.08994 * 109.47484 * 175.00277 * 14 12 11 44 44 H 0.96990 * 120.00080 * 179.97438 * 18 17 15 45 45 H 1.08004 * 119.99542 * 0.02562 * 24 23 12 46 46 H 1.07994 * 120.00308 * 180.23356 * 25 24 23 47 47 H 1.08003 * 119.99621 * 179.83807 * 26 25 24 48 48 H 1.08004 * 120.00445 * 179.97438 * 27 26 25 49 49 H 1.08003 * 119.99976 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2630 0.7213 6 6 3.1421 0.8784 2.1861 7 6 4.4978 0.6936 2.8710 8 6 2.3600 1.9865 2.8940 9 6 2.2146 1.7644 -1.4207 10 8 1.9792 1.0107 -2.3413 11 7 2.6590 3.0125 -1.6684 12 6 2.8571 3.4589 -3.0496 13 1 2.0953 3.0122 -3.6886 14 6 2.7466 4.9835 -3.1136 15 6 1.3430 5.4008 -2.7571 16 1 0.6037 4.6533 -2.5101 17 6 1.0028 6.7369 -2.7464 18 7 1.9033 7.6473 -3.0468 19 14 -0.7367 7.2543 -2.3039 20 1 -1.0561 6.7917 -0.9294 21 1 -0.8437 8.7342 -2.3650 22 1 -1.6929 6.6483 -3.2649 23 6 4.2229 3.0339 -3.5239 24 6 5.3079 3.1191 -2.6718 25 6 6.5601 2.7256 -3.1055 26 6 6.7286 2.2545 -4.3942 27 6 5.6445 2.1742 -5.2480 28 6 4.3917 2.5641 -4.8130 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8899 32 1 4.0035 0.5252 0.2435 33 1 3.8298 2.2447 0.6693 34 1 2.5790 -0.0535 2.2376 35 1 4.3444 0.4794 3.9286 36 1 5.0299 -0.1361 2.4056 37 1 5.0850 1.6060 2.7666 38 1 1.3943 2.1182 2.4062 39 1 2.2051 1.7123 3.9375 40 1 2.9231 2.9185 2.8426 41 1 2.8477 3.6151 -0.9321 42 1 3.4483 5.4286 -2.4081 43 1 2.9813 5.3228 -4.1225 44 1 1.6638 8.5871 -3.0397 45 1 5.1768 3.4899 -1.6659 46 1 7.4071 2.7886 -2.4386 47 1 7.7074 1.9495 -4.7339 48 1 5.7762 1.8066 -6.2550 49 1 3.5447 2.5017 -5.4802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415338180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = -101.095081 kcal Electronic energy + Delta-G solvation = -27912.192602 eV Core-core repulsion = 24223.577592 eV Total energy + Delta-G solvation = -3688.615010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36763 -40.07220 -38.62222 -36.95067 -36.57551 -34.73027 -32.88836 -31.72189 -30.99675 -30.38743 -27.98962 -27.33096 -26.81438 -25.24694 -23.80013 -23.35046 -21.79353 -21.18236 -20.83275 -18.81299 -18.37110 -17.98551 -17.59719 -16.91787 -16.57953 -16.48702 -16.09192 -15.72583 -15.51816 -15.27361 -15.09718 -14.74692 -14.46652 -14.34749 -14.19464 -14.06996 -13.68474 -13.55105 -13.46144 -13.18930 -12.96882 -12.92395 -12.67603 -12.60541 -12.46713 -12.29346 -12.15765 -11.91208 -11.84027 -11.60379 -11.51506 -11.45497 -11.42920 -11.35252 -10.61054 -10.25234 -9.99480 -9.75602 -9.51539 -8.20609 -6.31131 0.50911 0.55929 1.39246 1.41278 1.48934 1.64105 2.18319 2.39220 2.80731 2.97794 3.13447 3.65209 3.86847 3.92254 3.99467 4.02492 4.09561 4.18981 4.21275 4.31794 4.38204 4.43847 4.49490 4.56170 4.64794 4.72966 4.75927 4.78157 4.78971 4.83440 4.90961 5.02078 5.09376 5.12156 5.13993 5.19811 5.26310 5.34687 5.41713 5.48960 5.56991 5.59756 5.60841 5.64028 5.76832 5.87700 6.02340 6.15544 6.20099 6.68252 6.80810 7.32056 7.37868 8.89819 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007440 B = 0.005522 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.744178 B = 5069.500289 C = 7246.455071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.080 3.920 4 H 0.104 0.896 5 C -0.101 4.101 6 C -0.088 4.088 7 C -0.144 4.144 8 C -0.153 4.153 9 C 0.484 3.516 10 O -0.580 6.580 11 N -0.691 5.691 12 C 0.200 3.800 13 H 0.053 0.947 14 C 0.039 3.961 15 C -0.531 4.531 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.277 1.277 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.136 4.136 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.408 0.592 42 H 0.015 0.985 43 H 0.002 0.998 44 H 0.264 0.736 45 H 0.124 0.876 46 H 0.148 0.852 47 H 0.151 0.849 48 H 0.142 0.858 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -12.025 10.593 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.019 3.981 4 H 0.121 0.879 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.201 4.201 8 C -0.210 4.210 9 C 0.271 3.729 10 O -0.460 6.460 11 N -0.342 5.342 12 C 0.095 3.905 13 H 0.071 0.929 14 C 0.002 3.998 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.564 5.564 19 Si 0.780 3.220 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.244 0.756 42 H 0.033 0.967 43 H 0.020 0.980 44 H 0.073 0.927 45 H 0.142 0.858 46 H 0.166 0.834 47 H 0.169 0.831 48 H 0.160 0.840 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.229 -12.541 9.938 17.171 hybrid contribution -1.357 1.155 -0.205 1.794 sum 4.872 -11.386 9.733 15.752 Atomic orbital electron populations 1.22987 0.79865 1.04118 1.00137 1.87919 1.21113 1.25750 1.94279 1.22214 0.98908 0.86745 0.90225 0.87875 1.21731 0.92760 1.03406 0.95975 1.21017 0.97790 0.99552 0.92308 1.21808 0.95785 1.01927 1.00609 1.21947 0.99813 0.98505 1.00708 1.22018 0.76210 0.81569 0.93140 1.90635 1.52572 1.55006 1.47809 1.45901 1.66001 1.13669 1.08637 1.19714 0.92047 0.96006 0.82776 0.92904 1.19117 0.96420 0.88010 0.96249 1.21340 0.96675 0.92007 1.46825 0.92968 1.25762 1.00970 0.96771 0.95097 1.70061 1.35636 1.01294 1.49424 0.85667 0.80123 0.77029 0.79230 1.18791 1.20854 1.20270 1.20446 0.96005 0.98423 0.95105 1.21072 0.92670 1.00221 0.99782 1.21452 0.97014 0.98657 0.96966 1.21471 0.99552 0.99848 0.93845 1.21372 0.92141 0.99839 1.00879 1.21166 0.98504 1.00060 0.95688 0.91676 0.87723 0.95869 0.91729 0.88961 0.91012 0.91581 0.92914 0.92180 0.93181 0.91485 0.91997 0.75558 0.96682 0.97991 0.92691 0.85840 0.83379 0.83098 0.84005 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.81 113.37 1.23 1.84 16 2 O -0.37 -11.10 9.26 -129.99 -1.20 -12.31 16 3 C 0.08 2.26 2.38 29.85 0.07 2.33 16 4 H 0.10 2.54 6.09 -2.39 -0.01 2.53 16 5 C -0.10 -2.28 4.35 30.59 0.13 -2.14 16 6 C -0.09 -1.59 2.86 -10.80 -0.03 -1.62 16 7 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 8 C -0.15 -2.48 8.97 71.98 0.65 -1.83 16 9 C 0.48 17.96 7.09 87.65 0.62 18.58 16 10 O -0.58 -26.63 16.17 15.95 0.26 -26.37 16 11 N -0.69 -25.52 3.96 -446.11 -1.77 -27.29 16 12 C 0.20 8.62 2.11 44.24 0.09 8.71 16 13 H 0.05 2.59 7.44 -2.38 -0.02 2.57 16 14 C 0.04 1.97 4.49 29.85 0.13 2.11 16 15 C -0.53 -28.53 8.84 25.60 0.23 -28.31 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 17 C 0.01 0.71 5.46 84.65 0.46 1.17 16 18 N -0.92 -53.41 13.29 21.45 0.28 -53.12 16 19 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 24 C -0.12 -3.96 9.32 22.27 0.21 -3.75 16 25 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 26 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 27 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 28 C -0.14 -4.99 9.67 22.27 0.22 -4.78 16 29 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.87 7.81 -2.39 -0.02 1.85 16 34 H 0.07 1.42 7.62 -2.39 -0.02 1.40 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.05 0.85 6.52 -2.39 -0.02 0.84 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.41 13.42 8.32 -92.71 -0.77 12.65 16 42 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.26 14.48 8.31 -92.72 -0.77 13.71 16 45 H 0.12 3.76 7.73 -2.91 -0.02 3.74 16 46 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 47 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 48 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 49 H 0.11 4.05 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -70.13 403.43 4.98 -65.15 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.14 Total: 32.08 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 5.24 Total: -22.89 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -1.48 Total: -80.41 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.95 Total: -38.68 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -70.13 4.98 -65.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415338180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.948 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds