Wall clock time and date at job start Tue Mar 31 2020 12:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47398 * 2 1 4 4 C 1.30996 * 120.00606 * 127.03754 * 3 2 1 5 5 C 1.50709 * 119.99692 * 7.65407 * 4 3 2 6 6 N 1.46897 * 109.46693 * 127.22800 * 5 4 3 7 7 C 1.46897 * 111.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47430 * 180.02562 * 7 6 5 9 9 C 1.38257 * 119.92662 * 90.00548 * 8 7 6 10 10 C 1.38237 * 120.14789 * 179.97438 * 9 8 7 11 11 C 1.38566 * 120.00012 * 0.02562 * 10 9 8 12 12 O 1.35994 * 120.07320 * 179.97438 * 11 10 9 13 13 C 1.42894 * 117.00145 * 0.02751 * 12 11 10 14 14 C 1.39156 * 119.85140 * 0.02562 * 11 10 9 15 15 O 1.35999 * 120.07253 * 180.02562 * 14 11 10 16 16 C 1.42894 * 117.00127 * 179.97438 * 15 14 11 17 17 C 1.53001 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47433 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99676 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99867 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00532 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99482 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47643 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46863 * 120.00417 * 22 20 18 25 25 H 1.48502 * 109.47030 * 239.99633 * 22 20 18 26 26 C 1.38244 * 119.92960 * 270.29677 * 8 7 6 27 27 H 1.09003 * 109.47631 * 300.00258 * 1 2 3 28 28 H 1.09003 * 109.47313 * 60.00304 * 1 2 3 29 29 H 1.09005 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47302 * 239.99400 * 2 1 3 31 31 H 1.09004 * 109.46822 * 120.00285 * 2 1 3 32 32 H 1.08002 * 119.99560 * 307.04103 * 3 2 1 33 33 H 1.07999 * 120.00760 * 187.66056 * 4 3 2 34 34 H 1.09003 * 109.46865 * 7.23853 * 5 4 3 35 35 H 1.08994 * 109.47524 * 247.23411 * 5 4 3 36 36 H 1.00899 * 110.99780 * 56.05202 * 6 5 4 37 37 H 1.08999 * 109.46838 * 60.00315 * 7 6 5 38 38 H 1.09007 * 109.47611 * 300.00663 * 7 6 5 39 39 H 1.08002 * 119.91944 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.00396 * 179.97438 * 10 9 8 41 41 H 1.09008 * 109.46990 * 299.99458 * 13 12 11 42 42 H 1.08997 * 109.47311 * 59.99157 * 13 12 11 43 43 H 1.09002 * 109.47385 * 179.97438 * 13 12 11 44 44 H 1.09000 * 109.47515 * 59.99814 * 16 15 14 45 45 H 1.09004 * 109.46877 * 299.99848 * 16 15 14 46 46 H 1.09004 * 109.46829 * 299.99616 * 17 16 15 47 47 H 1.09000 * 109.47213 * 59.99367 * 17 16 15 48 48 H 0.96997 * 120.00781 * 180.02562 * 21 20 18 49 49 H 1.08001 * 119.99473 * 0.03024 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8949 1.8105 0.9055 5 6 3.5158 0.8025 1.8380 6 7 4.9785 0.9303 1.7935 7 6 5.6193 -0.0394 2.6918 8 6 7.1159 0.1218 2.6198 9 6 7.7579 0.9938 3.4795 10 6 9.1306 1.1449 3.4178 11 6 9.8663 0.4219 2.4925 12 8 11.2167 0.5697 2.4302 13 6 11.8120 1.4876 3.3495 14 6 9.2200 -0.4550 1.6266 15 8 9.9377 -1.1673 0.7171 16 6 9.2079 -2.0485 -0.1389 17 6 10.1772 -2.7581 -1.0864 18 6 9.4075 -3.6869 -1.9895 19 1 8.3342 -3.7638 -1.8967 20 6 10.0734 -4.4386 -2.9343 21 7 11.3803 -4.3454 -3.0470 22 14 9.1192 -5.5905 -4.0533 23 1 7.6727 -5.5124 -3.7267 24 1 9.3289 -5.1921 -5.4684 25 1 9.5975 -6.9823 -3.8548 26 6 7.8433 -0.5980 1.6903 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6811 2.1176 -0.7466 33 1 3.1611 2.8543 0.9840 34 1 3.2295 -0.2029 1.5291 35 1 3.1660 0.9838 2.8543 36 1 5.2660 1.8721 2.0134 37 1 5.3475 -1.0504 2.3884 38 1 5.2841 0.1356 3.7142 39 1 7.1855 1.5582 4.2008 40 1 9.6296 1.8270 4.0901 41 1 11.4005 2.4837 3.1861 42 1 11.5989 1.1694 4.3699 43 1 12.8906 1.5097 3.1938 44 1 8.4856 -1.4751 -0.7200 45 1 8.6828 -2.7889 0.4646 46 1 10.7026 -2.0179 -1.6899 47 1 10.8992 -3.3315 -0.5050 48 1 11.8488 -4.8739 -3.7119 49 1 7.3388 -1.2747 1.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449449856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:27 Heat of formation + Delta-G solvation = -44.157698 kcal Electronic energy + Delta-G solvation = -25853.432297 eV Core-core repulsion = 22167.286277 eV Total energy + Delta-G solvation = -3686.146020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.30603 -38.16576 -37.84174 -36.80267 -34.81571 -33.30944 -31.55863 -30.59670 -30.06006 -29.22818 -27.51842 -25.89737 -24.98574 -23.70604 -23.44545 -22.39281 -21.13533 -20.46851 -18.78598 -18.17413 -16.93360 -16.54987 -16.15519 -15.95197 -15.78840 -15.58268 -14.94808 -14.82675 -14.55910 -14.42733 -14.33323 -14.07307 -13.97903 -13.73311 -13.16054 -12.64330 -12.50862 -12.29484 -12.26933 -12.22156 -12.09928 -11.77379 -11.46642 -11.36099 -11.21887 -11.05164 -10.92037 -10.82423 -10.70947 -10.61874 -10.49170 -9.77679 -9.59444 -9.34452 -9.21638 -8.53868 -8.46920 -8.39335 -7.46856 -6.04618 -4.08829 1.43054 1.59332 1.99834 3.30359 3.37196 3.41167 3.44523 3.79433 3.86196 4.34886 4.45474 4.48862 4.79390 4.81197 4.83370 4.96755 5.03614 5.07781 5.11934 5.17952 5.19730 5.25324 5.31749 5.32103 5.39601 5.47624 5.51992 5.59226 5.60379 5.65202 5.73950 5.82929 5.87242 5.94674 6.11566 6.13504 6.33459 6.35154 6.42288 6.62456 6.64948 6.75718 6.83000 6.89953 7.20698 7.36580 7.62025 7.72705 7.89644 8.16423 8.30940 8.97198 9.55100 11.07079 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006192 B = 0.003611 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4521.011270 B = 7751.816954 C =11953.296748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.146 4.146 4 C -0.157 4.157 5 C 0.078 3.922 6 N -0.678 5.678 7 C 0.105 3.895 8 C -0.083 4.083 9 C -0.126 4.126 10 C -0.175 4.175 11 C 0.090 3.910 12 O -0.302 6.302 13 C 0.028 3.972 14 C 0.119 3.881 15 O -0.304 6.304 16 C 0.064 3.936 17 C 0.026 3.974 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.155 4.155 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.033 0.967 36 H 0.341 0.659 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 14.128 14.815 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.165 4.165 4 C -0.176 4.176 5 C -0.050 4.050 6 N -0.309 5.309 7 C -0.023 4.023 8 C -0.084 4.084 9 C -0.145 4.145 10 C -0.194 4.194 11 C 0.044 3.956 12 O -0.216 6.216 13 C -0.067 4.067 14 C 0.072 3.928 15 O -0.218 6.218 16 C -0.010 4.010 17 C -0.011 4.011 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.174 4.174 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.159 0.841 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.287 13.536 13.989 24.146 hybrid contribution -0.803 0.034 0.344 0.875 sum -15.090 13.570 14.334 24.846 Atomic orbital electron populations 1.21698 0.95203 1.01658 1.01767 1.20824 0.95889 0.94775 1.03068 1.22777 0.98614 0.97453 0.97675 1.22627 0.98135 0.98946 0.97857 1.21206 0.87499 0.99526 0.96788 1.60492 1.05777 1.09024 1.55623 1.20803 0.90076 0.97328 0.94124 1.19332 0.94522 0.97911 0.96597 1.20541 0.93575 0.99954 1.00422 1.20889 0.94843 1.02905 1.00764 1.18350 0.83093 0.97525 0.96599 1.86247 1.17421 1.60956 1.56956 1.23009 0.98969 0.92175 0.92567 1.18457 0.89921 0.93180 0.91252 1.86278 1.36446 1.53994 1.45054 1.23332 0.96764 0.90029 0.90834 1.19112 0.94402 0.94955 0.92652 1.21023 0.93782 1.23796 1.17597 0.92303 1.24987 0.94904 0.97024 0.97306 1.69988 1.07147 1.40860 1.34810 0.86449 0.80090 0.80516 0.80442 1.19623 1.20867 1.20883 1.21022 0.91673 1.03451 1.01246 0.92839 0.92709 0.92548 0.90876 0.90729 0.87238 0.87428 0.89497 0.94901 0.84053 0.90099 0.94504 0.86475 0.85311 0.93074 0.93094 0.88429 0.93080 0.93283 0.95389 0.95418 0.92817 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.65 16 2 C -0.11 -0.90 6.02 -27.89 -0.17 -1.07 16 3 C -0.15 -1.28 9.51 -36.03 -0.34 -1.62 16 4 C -0.16 -1.41 9.77 -36.02 -0.35 -1.76 16 5 C 0.08 0.71 5.77 -4.97 -0.03 0.68 16 6 N -0.68 -7.25 6.48 -116.34 -0.75 -8.00 16 7 C 0.10 1.14 5.81 -4.98 -0.03 1.11 16 8 C -0.08 -1.10 5.39 -104.61 -0.56 -1.66 16 9 C -0.13 -1.51 9.69 -39.57 -0.38 -1.89 16 10 C -0.18 -2.27 9.04 -39.46 -0.36 -2.62 16 11 C 0.09 1.49 6.70 -39.12 -0.26 1.23 16 12 O -0.30 -5.05 10.28 -34.22 -0.35 -5.40 16 13 C 0.03 0.30 9.81 101.05 0.99 1.29 16 14 C 0.12 2.23 6.70 -39.12 -0.26 1.97 16 15 O -0.30 -6.77 9.92 -34.24 -0.34 -7.11 16 16 C 0.06 1.45 4.68 37.16 0.17 1.62 16 17 C 0.03 0.70 5.34 -27.88 -0.15 0.56 16 18 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 22 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.15 -2.51 8.69 -39.46 -0.34 -2.86 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.61 5.30 -51.93 -0.28 0.33 16 32 H 0.11 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.11 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.09 0.82 5.31 -51.93 -0.28 0.54 16 35 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.34 3.36 8.71 -39.29 -0.34 3.02 16 37 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 38 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 41 H 0.05 0.46 7.66 -51.92 -0.40 0.06 16 42 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 1.10 7.65 -51.93 -0.40 0.71 16 45 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 46 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.14 2.26 6.30 -52.49 -0.33 1.93 16 LS Contribution 402.32 15.07 6.06 6.06 Total: -1.00 -32.46 402.32 -9.96 -42.42 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.18 Total: 0.97 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.12 Total: -19.28 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: -0.02 Total: -34.27 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -0.69 Total: -12.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.46 -9.96 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449449856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.734 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds