Wall clock time and date at job start Tue Mar 31 2020 12:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50691 * 109.47398 * 2 1 4 4 C 1.30996 * 120.00606 * 127.03754 * 3 2 1 5 5 C 1.50709 * 119.99692 * 7.65407 * 4 3 2 6 6 N 1.46897 * 109.46693 * 127.22800 * 5 4 3 7 7 C 1.46897 * 111.00031 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47430 * 180.02562 * 7 6 5 9 9 C 1.38257 * 119.92662 * 90.00548 * 8 7 6 10 10 C 1.38237 * 120.14789 * 179.97438 * 9 8 7 11 11 C 1.38566 * 120.00012 * 0.02562 * 10 9 8 12 12 O 1.35994 * 120.07320 * 179.97438 * 11 10 9 13 13 C 1.42894 * 117.00145 * 0.02751 * 12 11 10 14 14 C 1.39156 * 119.85140 * 0.02562 * 11 10 9 15 15 O 1.35999 * 120.07253 * 180.02562 * 14 11 10 16 16 C 1.42894 * 117.00127 * 179.97438 * 15 14 11 17 17 C 1.53001 * 109.47279 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.47433 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99676 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99867 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00532 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99482 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47643 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46863 * 120.00417 * 22 20 18 25 25 H 1.48502 * 109.47030 * 239.99633 * 22 20 18 26 26 C 1.38244 * 119.92960 * 270.29677 * 8 7 6 27 27 H 1.09003 * 109.47631 * 300.00258 * 1 2 3 28 28 H 1.09003 * 109.47313 * 60.00304 * 1 2 3 29 29 H 1.09005 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47302 * 239.99400 * 2 1 3 31 31 H 1.09004 * 109.46822 * 120.00285 * 2 1 3 32 32 H 1.08002 * 119.99560 * 307.04103 * 3 2 1 33 33 H 1.07999 * 120.00760 * 187.66056 * 4 3 2 34 34 H 1.09003 * 109.46865 * 7.23853 * 5 4 3 35 35 H 1.08994 * 109.47524 * 247.23411 * 5 4 3 36 36 H 1.00899 * 110.99780 * 56.05202 * 6 5 4 37 37 H 1.08999 * 109.46838 * 60.00315 * 7 6 5 38 38 H 1.09007 * 109.47611 * 300.00663 * 7 6 5 39 39 H 1.08002 * 119.91944 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.00396 * 179.97438 * 10 9 8 41 41 H 1.09008 * 109.46990 * 299.99458 * 13 12 11 42 42 H 1.08997 * 109.47311 * 59.99157 * 13 12 11 43 43 H 1.09002 * 109.47385 * 179.97438 * 13 12 11 44 44 H 1.09000 * 109.47515 * 59.99814 * 16 15 14 45 45 H 1.09004 * 109.46877 * 299.99848 * 16 15 14 46 46 H 1.09004 * 109.46829 * 299.99616 * 17 16 15 47 47 H 1.09000 * 109.47213 * 59.99367 * 17 16 15 48 48 H 0.96997 * 120.00781 * 180.02562 * 21 20 18 49 49 H 1.08001 * 119.99473 * 0.03024 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8949 1.8105 0.9055 5 6 3.5158 0.8025 1.8380 6 7 4.9785 0.9303 1.7935 7 6 5.6193 -0.0394 2.6918 8 6 7.1159 0.1218 2.6198 9 6 7.7579 0.9938 3.4795 10 6 9.1306 1.1449 3.4178 11 6 9.8663 0.4219 2.4925 12 8 11.2167 0.5697 2.4302 13 6 11.8120 1.4876 3.3495 14 6 9.2200 -0.4550 1.6266 15 8 9.9377 -1.1673 0.7171 16 6 9.2079 -2.0485 -0.1389 17 6 10.1772 -2.7581 -1.0864 18 6 9.4075 -3.6869 -1.9895 19 1 8.3342 -3.7638 -1.8967 20 6 10.0734 -4.4386 -2.9343 21 7 11.3803 -4.3454 -3.0470 22 14 9.1192 -5.5905 -4.0533 23 1 7.6727 -5.5124 -3.7267 24 1 9.3289 -5.1921 -5.4684 25 1 9.5975 -6.9823 -3.8548 26 6 7.8433 -0.5980 1.6903 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6811 2.1176 -0.7466 33 1 3.1611 2.8543 0.9840 34 1 3.2295 -0.2029 1.5291 35 1 3.1660 0.9838 2.8543 36 1 5.2660 1.8721 2.0134 37 1 5.3475 -1.0504 2.3884 38 1 5.2841 0.1356 3.7142 39 1 7.1855 1.5582 4.2008 40 1 9.6296 1.8270 4.0901 41 1 11.4005 2.4837 3.1861 42 1 11.5989 1.1694 4.3699 43 1 12.8906 1.5097 3.1938 44 1 8.4856 -1.4751 -0.7200 45 1 8.6828 -2.7889 0.4646 46 1 10.7026 -2.0179 -1.6899 47 1 10.8992 -3.3315 -0.5050 48 1 11.8488 -4.8739 -3.7119 49 1 7.3388 -1.2747 1.0165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449449856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:26 Heat of formation + Delta-G solvation = -63.554489 kcal Electronic energy + Delta-G solvation = -25854.273405 eV Core-core repulsion = 22167.286277 eV Total energy + Delta-G solvation = -3686.987128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51396 -39.46267 -38.83844 -37.74529 -35.70630 -35.38620 -32.63710 -32.16330 -31.05677 -30.54114 -28.42282 -27.11634 -26.59755 -24.54537 -24.07776 -23.95093 -22.45496 -21.95570 -19.65372 -19.26887 -18.62673 -17.70631 -17.61953 -17.15392 -16.86096 -16.55615 -16.44906 -16.33265 -15.63580 -15.57029 -15.15730 -15.06284 -14.78011 -14.64901 -14.33028 -14.21509 -14.11884 -13.59076 -13.18123 -13.09961 -12.95615 -12.86863 -12.78044 -12.67872 -12.59904 -12.50306 -12.11736 -11.94777 -11.87308 -11.82473 -11.59437 -11.57928 -11.38013 -11.26498 -10.62931 -10.03439 -9.64022 -9.25415 -8.71234 -8.26385 -6.40484 0.31535 0.44829 1.31662 1.40466 1.42126 1.55773 2.27896 2.43408 2.52138 2.69946 3.07657 3.52157 3.77157 3.86582 3.90184 4.07670 4.16119 4.19115 4.25917 4.26801 4.34569 4.40808 4.43167 4.44782 4.45616 4.50927 4.61244 4.66939 4.68709 4.74080 4.76066 4.80067 4.84002 4.97482 5.14412 5.22240 5.23329 5.28313 5.32202 5.36913 5.46169 5.59987 5.68481 5.76149 5.80868 5.96105 6.05963 6.08123 6.25848 6.48180 6.72134 6.75219 7.29611 8.87301 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006192 B = 0.003611 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4521.011270 B = 7751.816954 C =11953.296748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.165 4.165 5 C 0.081 3.919 6 N -0.693 5.693 7 C 0.110 3.890 8 C -0.082 4.082 9 C -0.107 4.107 10 C -0.165 4.165 11 C 0.074 3.926 12 O -0.342 6.342 13 C 0.018 3.982 14 C 0.068 3.932 15 O -0.337 6.337 16 C 0.087 3.913 17 C 0.031 3.969 18 C -0.545 4.545 19 H 0.070 0.930 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.978 3.022 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.161 4.161 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.347 0.653 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.055 0.945 45 H 0.058 0.942 46 H -0.005 1.005 47 H -0.004 1.004 48 H 0.267 0.733 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.343 15.313 16.557 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.172 4.172 4 C -0.183 4.183 5 C -0.047 4.047 6 N -0.325 5.325 7 C -0.018 4.018 8 C -0.083 4.083 9 C -0.125 4.125 10 C -0.183 4.183 11 C 0.028 3.972 12 O -0.257 6.257 13 C -0.076 4.076 14 C 0.022 3.978 15 O -0.252 6.252 16 C 0.012 3.988 17 C -0.007 4.007 18 C -0.582 4.582 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.181 4.181 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.166 0.834 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.178 0.822 40 H 0.182 0.818 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.013 0.987 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.795 14.748 15.761 27.349 hybrid contribution -0.002 -0.190 -0.061 0.200 sum -16.797 14.558 15.700 27.213 Atomic orbital electron populations 1.21678 0.94184 1.02072 1.02110 1.20851 0.96832 0.94523 1.02604 1.22936 0.98705 0.97774 0.97777 1.22742 0.98189 0.99381 0.97979 1.21180 0.86578 0.99295 0.97633 1.60434 1.06732 1.09325 1.56032 1.20763 0.88298 0.97169 0.95603 1.19627 0.95824 0.97201 0.95642 1.21045 0.93401 0.98412 0.99658 1.21308 0.95242 1.02070 0.99692 1.18662 0.83585 0.97798 0.97111 1.86189 1.17814 1.62692 1.59000 1.23346 0.99511 0.92123 0.92595 1.18914 0.91141 0.95242 0.92469 1.86170 1.37542 1.55010 1.46431 1.22814 0.95086 0.90341 0.90530 1.18939 0.94618 0.94183 0.92910 1.21417 0.94478 1.24224 1.18116 0.91142 1.26071 0.95928 0.98788 0.98972 1.70135 1.09193 1.42015 1.35785 0.85212 0.79009 0.77831 0.77851 1.18089 1.20143 1.20050 1.21061 0.90936 1.03996 1.02083 0.92401 0.92449 0.92119 0.91868 0.90693 0.86647 0.86675 0.90084 0.93405 0.83414 0.90831 0.91838 0.82242 0.81751 0.91166 0.91112 0.87298 0.92652 0.92405 0.98654 0.98516 0.92413 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.11 -1.73 6.02 29.84 0.18 -1.55 16 3 C -0.15 -2.48 9.51 25.65 0.24 -2.24 16 4 C -0.16 -2.66 9.77 25.65 0.25 -2.41 16 5 C 0.08 1.30 5.77 85.56 0.49 1.80 16 6 N -0.69 -13.26 6.48 -521.98 -3.38 -16.64 16 7 C 0.11 2.10 5.81 85.56 0.50 2.60 16 8 C -0.08 -2.01 5.39 -19.86 -0.11 -2.11 16 9 C -0.11 -2.14 9.69 22.27 0.22 -1.93 16 10 C -0.16 -3.78 9.04 22.35 0.20 -3.58 16 11 C 0.07 2.45 6.70 22.57 0.15 2.60 16 12 O -0.34 -11.61 10.28 -79.62 -0.82 -12.42 16 13 C 0.02 0.36 9.81 113.37 1.11 1.48 16 14 C 0.07 2.63 6.70 22.57 0.15 2.78 16 15 O -0.34 -16.03 9.92 -79.68 -0.79 -16.82 16 16 C 0.09 4.15 4.68 71.98 0.34 4.48 16 17 C 0.03 1.79 5.34 29.85 0.16 1.95 16 18 C -0.54 -32.07 9.11 25.60 0.23 -31.84 16 19 H 0.07 3.89 7.74 -2.91 -0.02 3.86 16 20 C 0.00 0.04 5.46 84.65 0.46 0.51 16 21 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 22 Si 0.98 44.73 29.54 68.60 2.03 46.75 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 26 C -0.16 -5.31 8.69 22.35 0.19 -5.12 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.15 5.30 -2.38 -0.01 1.13 16 32 H 0.12 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.12 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.08 1.40 5.31 -2.39 -0.01 1.39 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.35 5.83 8.71 -89.69 -0.78 5.05 16 37 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.06 0.90 8.08 -2.38 -0.02 0.88 16 39 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.17 2.53 6.30 -2.91 -0.02 2.51 16 41 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 42 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 45 H 0.06 2.59 7.67 -2.38 -0.02 2.57 16 46 H 0.00 -0.31 8.14 -2.38 -0.02 -0.33 16 47 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 49 H 0.13 4.31 6.30 -2.91 -0.02 4.29 16 Total: -1.00 -74.57 402.32 2.96 -71.62 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.15 Total: 19.38 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 5.49 Total: -33.67 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -3.10 Total: -74.83 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.61 Total: -29.24 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.57 2.96 -71.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449449856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.061 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds