Wall clock time and date at job start Tue Mar 31 2020 12:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00049 * 2 1 4 4 C 1.50708 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46793 * 95.00215 * 4 2 1 6 6 N 1.46898 * 109.46798 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00059 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47526 * 180.02562 * 7 6 5 9 9 C 1.38246 * 119.92759 * 90.00118 * 8 7 6 10 10 C 1.38242 * 120.14884 * 180.02562 * 9 8 7 11 11 C 1.38565 * 119.99815 * 359.97438 * 10 9 8 12 12 O 1.35996 * 120.07637 * 179.97438 * 11 10 9 13 13 C 1.42898 * 116.99713 * 0.02562 * 12 11 10 14 14 C 1.39160 * 119.85398 * 0.02562 * 11 10 9 15 15 O 1.35995 * 120.07175 * 180.02562 * 14 11 10 16 16 C 1.42903 * 116.99587 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.38248 * 119.92374 * 270.25810 * 8 7 6 27 27 H 1.07996 * 119.99877 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99942 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47356 * 239.99558 * 3 2 1 30 30 H 1.08995 * 109.47176 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47069 * 119.99785 * 3 2 1 32 32 H 1.08997 * 109.46594 * 335.00069 * 4 2 1 33 33 H 1.08996 * 109.47080 * 215.00136 * 4 2 1 34 34 H 1.08995 * 109.47168 * 60.00380 * 5 4 2 35 35 H 1.08996 * 109.47243 * 299.99820 * 5 4 2 36 36 H 1.00896 * 111.00336 * 303.95820 * 6 5 4 37 37 H 1.09000 * 109.46733 * 59.99875 * 7 6 5 38 38 H 1.09000 * 109.47115 * 300.00470 * 7 6 5 39 39 H 1.08004 * 119.92680 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.00411 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47236 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.47392 * 300.00389 * 13 12 11 43 43 H 1.09002 * 109.46922 * 59.99615 * 13 12 11 44 44 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 45 45 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 46 46 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 47 47 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 48 48 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 49 49 H 1.07994 * 120.00428 * 0.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 7 3.1615 -2.9570 -1.4358 7 6 3.5277 -3.3540 -2.8018 8 6 4.2769 -4.6610 -2.7614 9 6 3.5856 -5.8551 -2.8470 10 6 4.2682 -7.0567 -2.8098 11 6 5.6483 -7.0660 -2.6871 12 8 6.3214 -8.2471 -2.6498 13 6 5.5418 -9.4411 -2.7428 14 6 6.3442 -5.8639 -2.6010 15 8 7.6988 -5.8678 -2.4809 16 6 8.3463 -4.5966 -2.3971 17 6 9.8570 -4.8014 -2.2681 18 6 10.5398 -3.4608 -2.1791 19 1 9.9547 -2.5536 -2.2117 20 6 11.9114 -3.3926 -2.0560 21 7 12.6237 -4.4973 -2.0157 22 14 12.7577 -1.7309 -1.9463 23 1 12.2538 -0.9962 -0.7582 24 1 14.2240 -1.9296 -1.8197 25 1 12.4682 -0.9460 -3.1732 26 6 5.6534 -4.6632 -2.6335 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.6902 1.3629 -0.8899 30 1 1.3552 2.1336 -0.0005 31 1 2.6902 1.3629 0.8900 32 1 1.4386 -2.0852 0.4352 33 1 2.9742 -1.1986 0.5900 34 1 3.0524 -0.9044 -1.8709 35 1 1.5168 -1.7910 -2.0257 36 1 3.9765 -2.9040 -0.8434 37 1 4.1604 -2.5857 -3.2461 38 1 2.6245 -3.4717 -3.4005 39 1 2.5098 -5.8493 -2.9422 40 1 3.7257 -7.9882 -2.8764 41 1 6.1999 -10.3090 -2.7003 42 1 4.8360 -9.4798 -1.9129 43 1 4.9946 -9.4453 -3.6855 44 1 7.9765 -4.0573 -1.5250 45 1 8.1336 -4.0205 -3.2977 46 1 10.0700 -5.3776 -1.3677 47 1 10.2264 -5.3405 -3.1403 48 1 13.5886 -4.4493 -1.9287 49 1 6.1907 -3.7291 -2.5622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449472137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:30 Heat of formation + Delta-G solvation = -50.952439 kcal Electronic energy + Delta-G solvation = -25813.838426 eV Core-core repulsion = 22127.397764 eV Total energy + Delta-G solvation = -3686.440662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31829 -38.18143 -37.83469 -36.87179 -35.03070 -33.35156 -31.30249 -30.58379 -29.47521 -28.72044 -27.55426 -27.15822 -25.16251 -24.54012 -22.57309 -22.36097 -21.20814 -20.46148 -18.67470 -18.22214 -17.01245 -16.51972 -16.12077 -15.83109 -15.72508 -15.45679 -14.96670 -14.90394 -14.59419 -14.58248 -14.37751 -13.99157 -13.90025 -13.65991 -13.17014 -12.81856 -12.64583 -12.38401 -12.30050 -12.04823 -11.95887 -11.79381 -11.56081 -11.47812 -11.21854 -11.16569 -11.02185 -10.90720 -10.79028 -10.77023 -10.53436 -9.81476 -9.64017 -9.34315 -9.28937 -8.69600 -8.46186 -8.42478 -7.47267 -6.08140 -4.12979 1.40850 1.62129 1.92970 3.29065 3.33452 3.35076 3.43997 3.74062 3.83002 4.18343 4.41728 4.58828 4.70066 4.77192 4.85897 4.95822 5.03400 5.06782 5.18782 5.22985 5.24359 5.27896 5.28638 5.33129 5.39182 5.44720 5.51031 5.58721 5.60067 5.63103 5.66460 5.72550 5.83945 5.86008 6.05711 6.05906 6.30920 6.34754 6.36802 6.58026 6.63965 6.73526 6.79219 6.87781 7.18895 7.34980 7.57989 7.68402 7.85744 8.12941 8.26331 8.92446 9.50941 11.03377 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006877 B = 0.003234 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4070.467962 B = 8657.001679 C =12443.757258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.086 4.086 5 C 0.065 3.935 6 N -0.687 5.687 7 C 0.105 3.895 8 C -0.084 4.084 9 C -0.108 4.108 10 C -0.176 4.176 11 C 0.090 3.910 12 O -0.303 6.303 13 C 0.028 3.972 14 C 0.119 3.881 15 O -0.304 6.304 16 C 0.065 3.935 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.898 3.102 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.172 4.172 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.345 0.655 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.500 1.687 0.478 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.123 4.123 5 C -0.064 4.064 6 N -0.318 5.318 7 C -0.023 4.023 8 C -0.085 4.085 9 C -0.127 4.127 10 C -0.195 4.195 11 C 0.045 3.955 12 O -0.216 6.216 13 C -0.067 4.067 14 C 0.072 3.928 15 O -0.218 6.218 16 C -0.009 4.009 17 C -0.011 4.011 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.192 4.192 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.163 0.837 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.148 0.852 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.517 1.050 0.523 24.545 hybrid contribution 0.923 1.582 -0.144 1.838 sum -23.594 2.632 0.379 23.743 Atomic orbital electron populations 1.23727 0.95184 1.01804 1.02714 1.21738 0.95457 0.95684 0.99440 1.20902 1.00286 0.94309 1.02347 1.20643 1.00515 0.94300 0.96880 1.21908 0.98376 0.89708 0.96431 1.60528 1.29447 1.31242 1.10579 1.20777 0.98337 0.93096 0.90121 1.19336 0.92427 0.94666 1.02024 1.20538 0.99273 0.90895 1.01956 1.20957 0.91845 0.99348 1.07313 1.18354 0.90098 0.84527 1.02548 1.86243 1.34968 1.11879 1.88531 1.23015 0.96995 0.86036 1.00690 1.18400 0.84629 0.90997 0.98754 1.86287 1.14360 1.34420 1.86687 1.23315 0.96613 0.81692 0.99271 1.19102 0.85188 0.97961 0.98827 1.20930 0.91938 0.91768 1.51856 0.92499 1.24986 0.97398 0.96789 0.94981 1.69967 1.06490 1.26938 1.49290 0.86561 0.78401 0.83791 0.78684 1.20112 1.21109 1.20120 1.21025 0.94420 0.96901 1.06809 0.88625 0.88434 0.91540 0.92094 0.91481 0.90366 0.91188 0.95105 0.90994 0.83683 0.94301 0.90294 0.86026 0.85238 0.88434 0.93024 0.93050 0.93324 0.93343 0.95364 0.95378 0.92655 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 13.90 29.01 0.40 -1.06 16 2 C -0.12 -0.98 5.31 -101.06 -0.54 -1.51 16 3 C -0.12 -0.87 10.12 36.01 0.36 -0.50 16 4 C -0.09 -0.72 5.64 -27.88 -0.16 -0.88 16 5 C 0.06 0.58 5.67 -3.82 -0.02 0.56 16 6 N -0.69 -7.14 6.49 -115.06 -0.75 -7.89 16 7 C 0.11 1.14 5.81 -4.98 -0.03 1.11 16 8 C -0.08 -1.10 5.39 -104.62 -0.56 -1.67 16 9 C -0.11 -1.34 9.69 -39.58 -0.38 -1.72 16 10 C -0.18 -2.30 9.04 -39.46 -0.36 -2.66 16 11 C 0.09 1.49 6.70 -39.12 -0.26 1.23 16 12 O -0.30 -5.04 10.28 -34.23 -0.35 -5.39 16 13 C 0.03 0.30 9.81 101.05 0.99 1.29 16 14 C 0.12 2.20 6.70 -39.12 -0.26 1.93 16 15 O -0.30 -6.65 9.92 -34.23 -0.34 -6.99 16 16 C 0.07 1.43 4.68 37.16 0.17 1.61 16 17 C 0.03 0.71 5.34 -27.88 -0.15 0.56 16 18 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 22 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.17 -2.70 8.69 -39.46 -0.34 -3.04 16 27 H 0.10 0.62 7.83 -52.49 -0.41 0.21 16 28 H 0.10 0.69 7.99 -52.49 -0.42 0.27 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.38 7.78 -51.93 -0.40 -0.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.68 7.99 -51.93 -0.41 0.27 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.34 3.72 8.72 -39.29 -0.34 3.38 16 37 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 43 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 44 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 45 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 49 H 0.13 2.04 6.30 -52.49 -0.33 1.71 16 LS Contribution 406.88 15.07 6.13 6.13 Total: -1.00 -31.72 406.88 -9.56 -41.28 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.43 Total: 0.74 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.54 Total: -18.24 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.01 Total: -33.87 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.69 Total: -12.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.72 -9.56 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449472137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds