Wall clock time and date at job start Tue Mar 31 2020 12:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00049 * 2 1 4 4 C 1.50708 * 120.00160 * 179.97438 * 2 1 3 5 5 C 1.53001 * 109.46793 * 95.00215 * 4 2 1 6 6 N 1.46898 * 109.46798 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00059 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47526 * 180.02562 * 7 6 5 9 9 C 1.38246 * 119.92759 * 90.00118 * 8 7 6 10 10 C 1.38242 * 120.14884 * 180.02562 * 9 8 7 11 11 C 1.38565 * 119.99815 * 359.97438 * 10 9 8 12 12 O 1.35996 * 120.07637 * 179.97438 * 11 10 9 13 13 C 1.42898 * 116.99713 * 0.02562 * 12 11 10 14 14 C 1.39160 * 119.85398 * 0.02562 * 11 10 9 15 15 O 1.35995 * 120.07175 * 180.02562 * 14 11 10 16 16 C 1.42903 * 116.99587 * 180.02562 * 15 14 11 17 17 C 1.53000 * 109.46726 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46735 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99928 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99611 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99743 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00093 * 22 20 18 24 24 H 1.48505 * 109.46988 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00069 * 22 20 18 26 26 C 1.38248 * 119.92374 * 270.25810 * 8 7 6 27 27 H 1.07996 * 119.99877 * 0.02562 * 1 2 3 28 28 H 1.07996 * 119.99942 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47356 * 239.99558 * 3 2 1 30 30 H 1.08995 * 109.47176 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47069 * 119.99785 * 3 2 1 32 32 H 1.08997 * 109.46594 * 335.00069 * 4 2 1 33 33 H 1.08996 * 109.47080 * 215.00136 * 4 2 1 34 34 H 1.08995 * 109.47168 * 60.00380 * 5 4 2 35 35 H 1.08996 * 109.47243 * 299.99820 * 5 4 2 36 36 H 1.00896 * 111.00336 * 303.95820 * 6 5 4 37 37 H 1.09000 * 109.46733 * 59.99875 * 7 6 5 38 38 H 1.09000 * 109.47115 * 300.00470 * 7 6 5 39 39 H 1.08004 * 119.92680 * 359.97438 * 9 8 7 40 40 H 1.07997 * 120.00411 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.47236 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.47392 * 300.00389 * 13 12 11 43 43 H 1.09002 * 109.46922 * 59.99615 * 13 12 11 44 44 H 1.09002 * 109.47382 * 60.00075 * 16 15 14 45 45 H 1.09001 * 109.46938 * 300.00061 * 16 15 14 46 46 H 1.09001 * 109.47194 * 299.99575 * 17 16 15 47 47 H 1.08992 * 109.47399 * 59.99748 * 17 16 15 48 48 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 49 49 H 1.07994 * 120.00428 * 0.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4275 -1.6845 -1.4363 6 7 3.1615 -2.9570 -1.4358 7 6 3.5277 -3.3540 -2.8018 8 6 4.2769 -4.6610 -2.7614 9 6 3.5856 -5.8551 -2.8470 10 6 4.2682 -7.0567 -2.8098 11 6 5.6483 -7.0660 -2.6871 12 8 6.3214 -8.2471 -2.6498 13 6 5.5418 -9.4411 -2.7428 14 6 6.3442 -5.8639 -2.6010 15 8 7.6988 -5.8678 -2.4809 16 6 8.3463 -4.5966 -2.3971 17 6 9.8570 -4.8014 -2.2681 18 6 10.5398 -3.4608 -2.1791 19 1 9.9547 -2.5536 -2.2117 20 6 11.9114 -3.3926 -2.0560 21 7 12.6237 -4.4973 -2.0157 22 14 12.7577 -1.7309 -1.9463 23 1 12.2538 -0.9962 -0.7582 24 1 14.2240 -1.9296 -1.8197 25 1 12.4682 -0.9460 -3.1732 26 6 5.6534 -4.6632 -2.6335 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.6902 1.3629 -0.8899 30 1 1.3552 2.1336 -0.0005 31 1 2.6902 1.3629 0.8900 32 1 1.4386 -2.0852 0.4352 33 1 2.9742 -1.1986 0.5900 34 1 3.0524 -0.9044 -1.8709 35 1 1.5168 -1.7910 -2.0257 36 1 3.9765 -2.9040 -0.8434 37 1 4.1604 -2.5857 -3.2461 38 1 2.6245 -3.4717 -3.4005 39 1 2.5098 -5.8493 -2.9422 40 1 3.7257 -7.9882 -2.8764 41 1 6.1999 -10.3090 -2.7003 42 1 4.8360 -9.4798 -1.9129 43 1 4.9946 -9.4453 -3.6855 44 1 7.9765 -4.0573 -1.5250 45 1 8.1336 -4.0205 -3.2977 46 1 10.0700 -5.3776 -1.3677 47 1 10.2264 -5.3405 -3.1403 48 1 13.5886 -4.4493 -1.9287 49 1 6.1907 -3.7291 -2.5622 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449472137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:29 Heat of formation + Delta-G solvation = -69.479000 kcal Electronic energy + Delta-G solvation = -25814.641798 eV Core-core repulsion = 22127.397764 eV Total energy + Delta-G solvation = -3687.244034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52177 -39.47022 -38.81551 -37.77545 -35.87380 -35.43094 -32.61583 -32.00939 -30.84890 -29.62185 -28.21265 -27.95503 -27.04670 -25.51613 -23.95941 -23.23780 -22.55143 -21.90441 -19.56912 -19.19636 -18.63128 -17.78930 -17.59368 -17.15171 -16.74343 -16.52988 -16.33737 -16.15772 -15.77387 -15.61325 -15.23970 -15.08571 -14.74322 -14.40237 -14.31212 -14.16061 -14.05580 -13.82220 -13.33552 -13.09963 -13.02520 -12.83122 -12.65409 -12.58433 -12.57057 -12.50489 -12.19101 -12.02751 -11.92373 -11.82791 -11.73284 -11.59421 -11.56320 -11.42102 -10.62181 -9.92915 -9.70516 -9.38800 -8.71333 -8.26707 -6.41176 0.29655 0.46428 1.34672 1.39829 1.44370 1.52349 2.26894 2.43065 2.51229 2.67447 3.07244 3.34412 3.79975 3.83948 3.99831 4.06567 4.09018 4.14690 4.25100 4.25302 4.30875 4.39751 4.42143 4.43177 4.45946 4.61056 4.62850 4.67483 4.71348 4.73405 4.74720 4.82408 4.87037 5.01764 5.09477 5.13051 5.17736 5.20288 5.29248 5.31671 5.45549 5.60940 5.67489 5.77459 5.79958 5.99356 6.02925 6.04873 6.24903 6.35350 6.71460 6.74466 7.28947 8.86449 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.006877 B = 0.003234 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4070.467962 B = 8657.001679 C =12443.757258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 C -0.122 4.122 4 C -0.081 4.081 5 C 0.070 3.930 6 N -0.690 5.690 7 C 0.109 3.891 8 C -0.082 4.082 9 C -0.095 4.095 10 C -0.166 4.166 11 C 0.074 3.926 12 O -0.342 6.342 13 C 0.018 3.982 14 C 0.070 3.930 15 O -0.336 6.336 16 C 0.086 3.914 17 C 0.030 3.970 18 C -0.546 4.546 19 H 0.072 0.928 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.977 3.023 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.173 4.173 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.341 0.659 37 H 0.037 0.963 38 H 0.098 0.902 39 H 0.156 0.844 40 H 0.164 0.836 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.058 0.942 46 H -0.005 1.005 47 H -0.005 1.005 48 H 0.267 0.733 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.343 3.069 0.260 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.136 4.136 3 C -0.179 4.179 4 C -0.119 4.119 5 C -0.059 4.059 6 N -0.321 5.321 7 C -0.019 4.019 8 C -0.083 4.083 9 C -0.114 4.114 10 C -0.184 4.184 11 C 0.029 3.971 12 O -0.256 6.256 13 C -0.076 4.076 14 C 0.025 3.975 15 O -0.251 6.251 16 C 0.011 3.989 17 C -0.007 4.007 18 C -0.584 4.584 19 H 0.090 0.910 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.208 1.208 25 H -0.187 1.187 26 C -0.192 4.192 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.014 0.986 47 H 0.014 0.986 48 H 0.076 0.924 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.404 2.425 0.301 27.512 hybrid contribution 1.639 1.027 -0.083 1.936 sum -25.765 3.452 0.218 25.996 Atomic orbital electron populations 1.23875 0.95078 1.02468 1.01720 1.21803 0.95767 0.95699 1.00329 1.20915 1.00434 0.94287 1.02252 1.20582 1.00312 0.94554 0.96457 1.21897 0.98249 0.88959 0.96822 1.60556 1.29251 1.32132 1.10175 1.20784 0.98758 0.91756 0.90634 1.19611 0.91415 0.96371 1.00896 1.20995 1.00869 0.90110 0.99384 1.21331 0.90345 1.01211 1.05534 1.18663 0.91348 0.84092 1.03045 1.86187 1.37360 1.13302 1.88789 1.23345 0.97531 0.84296 1.02406 1.18851 0.83123 0.93117 1.02425 1.86183 1.16998 1.33748 1.88191 1.22830 0.93542 0.82388 1.00091 1.18936 0.88969 0.97103 0.95702 1.21357 0.92729 0.92486 1.51833 0.91031 1.26075 0.98230 1.01310 0.94144 1.70126 1.06941 1.29815 1.50201 0.85322 0.76930 0.78253 0.79462 1.18717 1.20752 1.18748 1.21090 0.95639 0.95815 1.06702 0.87662 0.88136 0.91694 0.91252 0.91549 0.90710 0.91648 0.95222 0.90460 0.84174 0.94432 0.88410 0.82650 0.81896 0.87243 0.91227 0.91140 0.92318 0.92416 0.98624 0.98640 0.92422 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 13.90 67.78 0.94 -1.57 16 2 C -0.14 -1.94 5.31 -16.48 -0.09 -2.03 16 3 C -0.12 -1.57 10.12 71.24 0.72 -0.85 16 4 C -0.08 -1.25 5.64 29.85 0.17 -1.08 16 5 C 0.07 1.11 5.67 86.30 0.49 1.60 16 6 N -0.69 -12.98 6.49 -517.95 -3.36 -16.34 16 7 C 0.11 2.09 5.81 85.56 0.50 2.59 16 8 C -0.08 -2.00 5.39 -19.86 -0.11 -2.11 16 9 C -0.10 -2.05 9.69 22.27 0.22 -1.83 16 10 C -0.17 -3.93 9.04 22.35 0.20 -3.73 16 11 C 0.07 2.44 6.70 22.57 0.15 2.59 16 12 O -0.34 -11.55 10.28 -79.64 -0.82 -12.37 16 13 C 0.02 0.37 9.81 113.37 1.11 1.48 16 14 C 0.07 2.67 6.70 22.57 0.15 2.82 16 15 O -0.34 -15.62 9.92 -79.63 -0.79 -16.41 16 16 C 0.09 3.96 4.68 71.98 0.34 4.30 16 17 C 0.03 1.72 5.34 29.85 0.16 1.88 16 18 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 19 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.00 0.05 5.46 84.66 0.46 0.52 16 21 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 22 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.17 -5.43 8.69 22.35 0.19 -5.23 16 27 H 0.11 1.14 7.83 -2.91 -0.02 1.11 16 28 H 0.10 1.22 7.99 -2.91 -0.02 1.19 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.76 7.78 -2.39 -0.02 0.74 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 1.19 7.99 -2.39 -0.02 1.17 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.34 6.95 8.72 -89.70 -0.78 6.17 16 37 H 0.04 0.74 8.09 -2.39 -0.02 0.72 16 38 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 39 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.16 2.68 6.30 -2.91 -0.02 2.66 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 1.12 7.66 -2.38 -0.02 1.10 16 43 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 44 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 45 H 0.06 2.49 7.67 -2.39 -0.02 2.48 16 46 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 49 H 0.13 4.03 6.30 -2.91 -0.02 4.01 16 Total: -1.00 -71.94 406.88 3.32 -68.62 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.13 Total: 20.07 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 5.84 Total: -31.94 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -3.08 Total: -73.95 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.61 Total: -28.78 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.94 3.32 -68.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449472137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.858 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds