Wall clock time and date at job start Tue Mar 31 2020 13:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.53002 * 109.46826 * 174.99919 * 3 2 1 5 5 C 1.52996 * 109.46997 * 184.99906 * 4 3 2 6 6 O 1.42902 * 109.46933 * 294.99574 * 3 2 1 7 7 C 1.35711 * 116.99892 * 144.61960 * 6 3 2 8 8 C 1.38999 * 119.90857 * 358.86600 * 7 6 3 9 9 C 1.37705 * 120.08468 * 180.02562 * 8 7 6 10 10 C 1.39729 * 119.91221 * 359.97438 * 9 8 7 11 11 C 1.47610 * 120.08688 * 179.97438 * 10 9 8 12 12 O 1.21581 * 119.99747 * 334.41071 * 11 10 9 13 13 N 1.34769 * 119.99667 * 154.14258 * 11 10 9 14 14 C 1.46500 * 120.00615 * 356.17130 * 13 11 10 15 15 C 1.46505 * 119.99612 * 176.17751 * 13 11 10 16 16 H 1.08991 * 109.47409 * 359.97438 * 15 13 11 17 17 C 1.53003 * 109.46699 * 239.99227 * 15 13 11 18 18 C 1.50699 * 109.47270 * 119.99510 * 15 13 11 19 19 H 1.08002 * 119.99829 * 0.02562 * 18 15 13 20 20 C 1.37876 * 120.00308 * 179.97438 * 18 15 13 21 21 N 1.31519 * 119.99661 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 120.00257 * 179.97438 * 20 18 15 23 23 H 1.48494 * 109.47038 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46913 * 120.00679 * 22 20 18 25 25 H 1.48502 * 109.47226 * 240.00550 * 22 20 18 26 26 C 1.39729 * 119.82592 * 0.25992 * 10 9 8 27 27 C 1.37708 * 119.90779 * 359.53006 * 26 10 9 28 28 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47230 * 300.00310 * 1 2 3 30 30 H 1.09000 * 109.47011 * 59.99899 * 1 2 3 31 31 H 1.08995 * 109.46785 * 239.99568 * 2 1 3 32 32 H 1.09001 * 109.46504 * 119.99528 * 2 1 3 33 33 H 1.09002 * 109.47070 * 54.99949 * 3 2 1 34 34 H 1.08996 * 109.46873 * 304.99739 * 4 3 2 35 35 H 1.09000 * 109.47046 * 64.99640 * 4 3 2 36 36 H 1.09006 * 109.47015 * 300.00191 * 5 4 3 37 37 H 1.09005 * 109.47120 * 59.99659 * 5 4 3 38 38 H 1.08994 * 109.47562 * 179.97438 * 5 4 3 39 39 H 1.07997 * 119.95901 * 0.02562 * 8 7 6 40 40 H 1.08006 * 120.04428 * 179.97438 * 9 8 7 41 41 H 1.08997 * 109.47327 * 95.61797 * 14 13 11 42 42 H 1.09001 * 109.47187 * 215.62055 * 14 13 11 43 43 H 1.09008 * 109.46612 * 335.61710 * 14 13 11 44 44 H 1.09000 * 109.47198 * 60.00466 * 17 15 13 45 45 H 1.09006 * 109.47103 * 179.97438 * 17 15 13 46 46 H 1.08995 * 109.47740 * 299.99930 * 17 15 13 47 47 H 0.96997 * 119.99570 * 179.97438 * 21 20 18 48 48 H 1.08006 * 120.04802 * 179.74522 * 26 10 9 49 49 H 1.07998 * 119.95107 * 180.19255 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0646 2.8848 0.2511 6 8 1.6621 2.0813 -1.2211 7 6 1.3416 3.3983 -1.1539 8 6 1.3678 4.0564 0.0701 9 6 1.0428 5.3926 0.1426 10 6 0.6869 6.0870 -1.0165 11 6 0.3372 7.5192 -0.9432 12 8 -0.0935 7.9875 0.0928 13 7 0.5006 8.3088 -2.0231 14 6 1.1031 7.7660 -3.2432 15 6 0.0757 9.7101 -1.9768 16 1 -0.3459 9.9298 -0.9961 17 6 -0.9826 9.9579 -3.0537 18 6 1.2636 10.6036 -2.2250 19 1 2.2376 10.1709 -2.4001 20 6 1.1069 11.9735 -2.2295 21 7 -0.0792 12.5003 -2.0168 22 14 2.5795 13.0810 -2.5364 23 1 3.7906 12.2476 -2.7458 24 1 2.3334 13.9083 -3.7448 25 1 2.7851 13.9677 -1.3630 26 6 0.6570 5.4206 -2.2443 27 6 0.9875 4.0854 -2.3091 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6054 1.9815 0.8418 34 1 3.8570 0.8800 1.0113 35 1 4.0030 0.9834 -0.7596 36 1 3.7723 3.4492 -0.6345 37 1 3.6264 3.3457 1.1365 38 1 5.1508 2.8862 0.3412 39 1 1.6434 3.5192 0.9655 40 1 1.0630 5.9032 1.0941 41 1 0.3158 7.4510 -3.9281 42 1 1.7135 8.5332 -3.7194 43 1 1.7283 6.9097 -2.9897 44 1 -1.8418 9.3117 -2.8742 45 1 -1.2991 11.0004 -3.0190 46 1 -0.5613 9.7382 -4.0346 47 1 -0.1893 13.4640 -2.0196 48 1 0.3784 5.9528 -3.1419 49 1 0.9677 3.5704 -3.2581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449839530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:06 Heat of formation + Delta-G solvation = -40.689405 kcal Electronic energy + Delta-G solvation = -27339.490266 eV Core-core repulsion = 23653.494642 eV Total energy + Delta-G solvation = -3685.995624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.71536 -39.37415 -37.26678 -35.38077 -34.69902 -33.00623 -32.51366 -31.02285 -30.39488 -28.74645 -26.80644 -26.33795 -25.21412 -23.42984 -23.28647 -22.36206 -21.03383 -20.57539 -18.96468 -18.38253 -16.78923 -16.31621 -16.12925 -15.84328 -15.49756 -15.00529 -14.58809 -14.38509 -14.32336 -14.15498 -13.79779 -13.38572 -13.30610 -13.25675 -13.05606 -12.66579 -12.52990 -12.36759 -12.18041 -12.04902 -11.89994 -11.61191 -11.50339 -11.39691 -11.22914 -11.07784 -10.94944 -10.80792 -10.69490 -10.56774 -10.37197 -10.23605 -10.14819 -9.18068 -8.99317 -8.91742 -8.42002 -8.10722 -7.56061 -6.06205 -4.13847 1.16829 1.40052 3.00504 3.26753 3.33090 3.35327 3.38505 3.91699 4.16801 4.23220 4.41045 4.51413 4.55851 4.80172 4.86010 4.90772 4.99687 5.09729 5.10853 5.13674 5.25363 5.34524 5.40927 5.45643 5.46954 5.58730 5.63202 5.67366 5.71554 5.78240 5.84093 5.94853 5.95479 6.02999 6.06555 6.23881 6.33336 6.38891 6.54018 6.69954 6.77020 6.85715 7.07488 7.33653 7.44526 7.55915 7.73064 8.03214 8.21173 8.53589 8.84963 9.07226 9.52527 10.99252 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002738 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.042947 B =10223.741258 C =10618.090644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.076 3.924 4 C -0.142 4.142 5 C -0.160 4.160 6 O -0.304 6.304 7 C 0.148 3.852 8 C -0.223 4.223 9 C -0.025 4.025 10 C -0.159 4.159 11 C 0.546 3.454 12 O -0.552 6.552 13 N -0.586 5.586 14 C 0.071 3.929 15 C 0.257 3.743 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.062 4.062 27 C -0.167 4.167 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.094 0.906 46 H 0.030 0.970 47 H 0.263 0.737 48 H 0.152 0.848 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -24.176 0.963 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.020 3.980 4 C -0.180 4.180 5 C -0.218 4.218 6 O -0.218 6.218 7 C 0.102 3.898 8 C -0.241 4.241 9 C -0.044 4.044 10 C -0.162 4.162 11 C 0.334 3.666 12 O -0.432 6.432 13 N -0.316 5.316 14 C -0.073 4.073 15 C 0.157 3.843 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.081 4.081 27 C -0.186 4.186 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.030 0.970 45 H 0.112 0.888 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.169 0.831 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.215 -23.838 1.330 24.244 hybrid contribution 0.886 0.698 -0.057 1.129 sum 5.101 -23.140 1.273 23.730 Atomic orbital electron populations 1.21767 0.95069 1.01869 1.02536 1.21672 0.96885 0.94238 1.03079 1.22696 0.94902 0.93759 0.86690 1.22033 0.94616 0.98464 1.02884 1.21954 1.01220 0.96012 1.02565 1.86064 1.81284 1.20316 1.34127 1.19174 0.93549 0.83046 0.94031 1.21217 1.09851 0.95949 0.97124 1.21018 0.92502 0.92720 0.98161 1.20119 1.06821 0.95140 0.94148 1.18170 0.79134 0.85242 0.84034 1.90725 1.47433 1.75461 1.29540 1.48125 1.58579 1.13182 1.11679 1.22152 0.97456 0.99798 0.87867 1.18966 0.93737 0.74037 0.97531 0.91820 1.22090 0.96857 1.03452 0.98100 1.21352 0.94483 0.90956 1.49484 0.92156 1.24896 0.96034 0.97938 0.94953 1.69892 1.21756 1.11717 1.49246 0.86439 0.82617 0.80520 0.77814 1.19807 1.20948 1.20914 1.21933 0.94701 0.93252 0.98170 1.20338 1.07152 0.94144 0.96960 0.92458 0.92742 0.91915 0.90828 0.90210 0.90131 0.90575 0.90891 0.91939 0.92344 0.92436 0.84913 0.84882 0.93363 0.90366 0.91276 0.96977 0.88768 0.95112 0.92750 0.83069 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.81 37.16 0.36 -0.76 16 2 C -0.12 -0.81 5.64 -26.73 -0.15 -0.96 16 3 C 0.08 0.63 2.15 -26.73 -0.06 0.57 16 4 C -0.14 -1.06 5.64 -26.73 -0.15 -1.21 16 5 C -0.16 -1.41 8.47 37.16 0.31 -1.10 16 6 O -0.30 -3.31 9.17 -18.84 -0.17 -3.48 16 7 C 0.15 1.80 5.40 -39.02 -0.21 1.59 16 8 C -0.22 -2.76 7.20 -39.49 -0.28 -3.04 16 9 C -0.02 -0.38 9.58 -39.22 -0.38 -0.76 16 10 C -0.16 -2.72 5.48 -104.96 -0.58 -3.29 16 11 C 0.55 11.95 7.48 -12.44 -0.09 11.85 16 12 O -0.55 -14.18 15.95 5.29 0.08 -14.09 16 13 N -0.59 -12.82 2.75 -176.46 -0.49 -13.31 16 14 C 0.07 1.20 7.75 59.85 0.46 1.67 16 15 C 0.26 6.67 2.63 -69.08 -0.18 6.48 16 16 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 17 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 18 C -0.52 -14.29 8.04 -34.44 -0.28 -14.57 16 19 H 0.06 1.63 7.24 -52.49 -0.38 1.25 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 22 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.06 -0.88 7.49 -39.22 -0.29 -1.17 16 27 C -0.17 -2.08 9.97 -39.50 -0.39 -2.47 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.66 5.33 -51.93 -0.28 0.39 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 37 H 0.06 0.50 6.82 -51.93 -0.35 0.15 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.13 1.34 4.51 -52.49 -0.24 1.11 16 40 H 0.13 2.06 7.85 -52.48 -0.41 1.64 16 41 H 0.05 0.71 7.16 -51.93 -0.37 0.34 16 42 H 0.08 1.41 6.96 -51.93 -0.36 1.05 16 43 H 0.07 1.02 5.08 -51.92 -0.26 0.75 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 46 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.15 1.96 4.52 -52.48 -0.24 1.72 16 49 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -31.70 378.85 -8.56 -40.26 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.64 Total: 2.10 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.66 Total: -8.69 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.14 Total: -37.95 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.09 Total: -17.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.70 -8.56 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449839530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.430 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds