Wall clock time and date at job start Tue Mar 31 2020 13:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47484 * 2 1 4 4 C 1.52998 * 109.47316 * 174.99705 * 3 2 1 5 5 C 1.53002 * 109.47121 * 184.99746 * 4 3 2 6 6 O 1.42906 * 109.46963 * 294.99906 * 3 2 1 7 7 C 1.35709 * 116.99559 * 98.64710 * 6 3 2 8 8 C 1.38992 * 119.91630 * 354.42413 * 7 6 3 9 9 C 1.37703 * 120.08677 * 180.02562 * 8 7 6 10 10 C 1.39725 * 119.91485 * 359.97438 * 9 8 7 11 11 C 1.47611 * 120.09075 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99453 * 22.41647 * 11 10 9 13 13 N 1.34769 * 119.99943 * 202.41123 * 11 10 9 14 14 C 1.46501 * 120.00511 * 4.75691 * 13 11 10 15 15 C 1.46500 * 120.00011 * 184.75585 * 13 11 10 16 16 H 1.09005 * 109.47133 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47408 * 120.00427 * 15 13 11 18 18 C 1.50707 * 109.47103 * 240.00313 * 15 13 11 19 19 H 1.07996 * 119.99639 * 359.97438 * 18 15 13 20 20 C 1.37874 * 119.99727 * 179.97438 * 18 15 13 21 21 N 1.31523 * 120.00229 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99960 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46897 * 90.00231 * 22 20 18 24 24 H 1.48493 * 109.47250 * 210.00291 * 22 20 18 25 25 H 1.48499 * 109.46920 * 330.00594 * 22 20 18 26 26 C 1.39735 * 119.82409 * 0.27600 * 10 9 8 27 27 C 1.37703 * 119.90783 * 359.47222 * 26 10 9 28 28 H 1.08997 * 109.47416 * 300.00203 * 1 2 3 29 29 H 1.08996 * 109.46752 * 60.00299 * 1 2 3 30 30 H 1.09008 * 109.47435 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47199 * 239.99262 * 2 1 3 32 32 H 1.09006 * 109.47141 * 120.00044 * 2 1 3 33 33 H 1.08998 * 109.46817 * 54.99769 * 3 2 1 34 34 H 1.08996 * 109.47438 * 305.00195 * 4 3 2 35 35 H 1.09004 * 109.47055 * 65.00418 * 4 3 2 36 36 H 1.09000 * 109.46709 * 59.99895 * 5 4 3 37 37 H 1.08999 * 109.46789 * 180.02562 * 5 4 3 38 38 H 1.08996 * 109.47331 * 300.00514 * 5 4 3 39 39 H 1.07999 * 119.95750 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.04394 * 179.97438 * 9 8 7 41 41 H 1.08999 * 109.47361 * 264.20753 * 14 13 11 42 42 H 1.08998 * 109.47688 * 144.19627 * 14 13 11 43 43 H 1.09001 * 109.46984 * 24.20035 * 14 13 11 44 44 H 1.09004 * 109.46963 * 299.99843 * 17 15 13 45 45 H 1.08998 * 109.47312 * 60.00106 * 17 15 13 46 46 H 1.09001 * 109.47612 * 180.02562 * 17 15 13 47 47 H 0.97001 * 119.99883 * 179.97438 * 21 20 18 48 48 H 1.07998 * 120.04609 * 179.69799 * 26 10 9 49 49 H 1.08000 * 119.95633 * 180.25160 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4442 0.1258 5 6 4.0646 2.8849 0.2511 6 8 1.6620 2.0813 -1.2211 7 6 0.5589 2.8710 -1.1874 8 6 -0.2120 2.9361 -0.0326 9 6 -1.3323 3.7358 0.0053 10 6 -1.6936 4.4829 -1.1188 11 6 -2.8935 5.3419 -1.0822 12 8 -3.3317 5.7288 -0.0162 13 7 -3.5030 5.6973 -2.2304 14 6 -3.0388 5.1480 -3.5068 15 6 -4.6299 6.6330 -2.2024 16 1 -4.8288 6.9315 -1.1730 17 6 -4.2864 7.8702 -3.0343 18 6 -5.8522 5.9647 -2.7772 19 1 -5.7952 4.9452 -3.1287 20 6 -7.0432 6.6550 -2.8543 21 7 -7.1125 7.8969 -2.4267 22 14 -8.5582 5.8269 -3.5675 23 1 -9.3088 5.1478 -2.4810 24 1 -9.4268 6.8486 -4.2054 25 1 -8.1434 4.8261 -4.5831 26 6 -0.9190 4.4107 -2.2795 27 6 0.2029 3.6126 -2.3078 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6054 1.9814 0.8418 34 1 3.8571 0.8799 1.0113 35 1 4.0030 0.9835 -0.7596 36 1 3.6264 3.3456 1.1364 37 1 5.1509 2.8861 0.3403 38 1 3.7723 3.4492 -0.6344 39 1 0.0677 2.3581 0.8358 40 1 -1.9310 3.7856 0.9029 41 1 -2.3484 5.8496 -3.9748 42 1 -3.8927 4.9850 -4.1643 43 1 -2.5298 4.2003 -3.3308 44 1 -3.4023 8.3536 -2.6185 45 1 -4.0873 7.5722 -4.0636 46 1 -5.1246 8.5667 -3.0130 47 1 -7.9503 8.3826 -2.4814 48 1 -1.1977 4.9828 -3.1521 49 1 0.8044 3.5593 -3.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449839531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:09 Heat of formation + Delta-G solvation = -36.105549 kcal Electronic energy + Delta-G solvation = -27324.470333 eV Core-core repulsion = 23638.673481 eV Total energy + Delta-G solvation = -3685.796853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71059 -39.39052 -37.26229 -35.39989 -34.70627 -33.03196 -32.52803 -31.02407 -30.39041 -28.73612 -26.80955 -26.39840 -25.21255 -23.41434 -23.27961 -22.36560 -21.02567 -20.58385 -18.98584 -18.37522 -16.80286 -16.32446 -16.07793 -15.83247 -15.53372 -14.97458 -14.58375 -14.40915 -14.33470 -14.15533 -13.81728 -13.36476 -13.33556 -13.26229 -13.04451 -12.65249 -12.52836 -12.39707 -12.20984 -12.01364 -11.88314 -11.60093 -11.51337 -11.40995 -11.23166 -11.05407 -10.90381 -10.81651 -10.68853 -10.54708 -10.35814 -10.23488 -10.13953 -9.19155 -8.99447 -8.90661 -8.41310 -8.11782 -7.56204 -6.05932 -4.13713 1.16132 1.40248 3.00576 3.28277 3.33412 3.35072 3.37501 3.92910 4.17449 4.23532 4.41191 4.51370 4.57099 4.80734 4.85377 4.91045 4.98986 5.09489 5.11044 5.12767 5.25544 5.33969 5.41093 5.45995 5.46669 5.58884 5.62442 5.66367 5.71539 5.77374 5.83637 5.93813 5.95334 6.01940 6.06455 6.24331 6.33756 6.38266 6.53964 6.70401 6.76938 6.85602 7.07429 7.34034 7.44470 7.55795 7.72999 8.03153 8.21237 8.53515 8.84880 9.07220 9.52612 10.99457 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.002718 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.040737 B =10297.963234 C =10666.335123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C 0.076 3.924 4 C -0.123 4.123 5 C -0.155 4.155 6 O -0.304 6.304 7 C 0.147 3.853 8 C -0.224 4.224 9 C -0.025 4.025 10 C -0.159 4.159 11 C 0.546 3.454 12 O -0.552 6.552 13 N -0.586 5.586 14 C 0.067 3.933 15 C 0.258 3.742 16 H 0.064 0.936 17 C -0.146 4.146 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.069 4.069 27 C -0.167 4.167 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.011 0.989 45 H 0.030 0.970 46 H 0.094 0.906 47 H 0.263 0.737 48 H 0.158 0.842 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.615 -13.346 1.968 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.179 4.179 3 C 0.020 3.980 4 C -0.160 4.160 5 C -0.212 4.212 6 O -0.218 6.218 7 C 0.101 3.899 8 C -0.242 4.242 9 C -0.044 4.044 10 C -0.163 4.163 11 C 0.334 3.666 12 O -0.432 6.432 13 N -0.316 5.316 14 C -0.076 4.076 15 C 0.158 3.842 16 H 0.082 0.918 17 C -0.205 4.205 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.087 4.087 27 C -0.186 4.186 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.068 0.932 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.030 0.970 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.175 0.825 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.346 -13.008 2.356 24.263 hybrid contribution -0.942 -0.516 -0.280 1.110 sum 19.404 -13.523 2.076 23.742 Atomic orbital electron populations 1.21966 0.95026 1.02154 1.02619 1.22019 0.97005 0.95834 1.03062 1.22693 0.95587 0.93153 0.86561 1.21693 0.93028 0.98430 1.02841 1.21767 1.00900 0.96143 1.02436 1.86060 1.41698 1.59012 1.35029 1.19204 0.86308 0.90068 0.94312 1.21265 0.98655 1.05700 0.98607 1.21030 0.94281 0.91599 0.97483 1.20128 0.98556 1.02336 0.95237 1.18165 0.83046 0.80834 0.84529 1.90723 1.66263 1.56679 1.29510 1.48115 1.33491 1.45019 1.04941 1.22247 1.00530 0.97361 0.87465 1.18961 0.81486 0.85142 0.98643 0.91830 1.22089 1.00127 1.00236 0.98045 1.21315 0.94051 0.99290 1.41703 0.92207 1.24893 0.98725 0.94877 0.95290 1.69884 1.26495 1.09674 1.46573 0.86493 0.82626 0.79075 0.79175 1.20617 1.21130 1.19920 1.22166 0.92177 0.96245 0.98096 1.20368 0.99562 1.00704 0.97924 0.92340 0.91912 0.92425 0.90871 0.90561 0.90141 0.90237 0.90836 0.92736 0.92452 0.91933 0.84845 0.84848 0.93235 0.90351 0.90965 0.96976 0.95107 0.88766 0.92692 0.82504 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 8.46 37.16 0.31 -1.07 16 2 C -0.14 -1.04 5.64 -26.74 -0.15 -1.19 16 3 C 0.08 0.63 2.13 -26.74 -0.06 0.58 16 4 C -0.12 -0.83 5.64 -26.73 -0.15 -0.98 16 5 C -0.16 -1.14 9.81 37.16 0.36 -0.77 16 6 O -0.30 -3.32 9.12 -18.83 -0.17 -3.49 16 7 C 0.15 1.80 5.65 -39.02 -0.22 1.58 16 8 C -0.22 -2.78 7.26 -39.50 -0.29 -3.06 16 9 C -0.02 -0.38 9.58 -39.22 -0.38 -0.76 16 10 C -0.16 -2.73 5.57 -104.96 -0.58 -3.31 16 11 C 0.55 11.95 7.51 -12.44 -0.09 11.86 16 12 O -0.55 -14.18 15.89 5.29 0.08 -14.10 16 13 N -0.59 -12.82 2.75 -176.46 -0.49 -13.30 16 14 C 0.07 1.14 7.71 59.85 0.46 1.60 16 15 C 0.26 6.68 2.63 -69.08 -0.18 6.49 16 16 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 17 C -0.15 -3.53 8.97 37.16 0.33 -3.19 16 18 C -0.52 -14.32 8.04 -34.44 -0.28 -14.60 16 19 H 0.06 1.61 7.24 -52.49 -0.38 1.23 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 22 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.07 -0.97 7.54 -39.22 -0.30 -1.27 16 27 C -0.17 -2.08 9.97 -39.50 -0.39 -2.47 16 28 H 0.06 0.49 6.66 -51.93 -0.35 0.14 16 29 H 0.06 0.66 6.47 -51.93 -0.34 0.32 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.67 5.45 -51.93 -0.28 0.39 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 39 H 0.13 1.36 4.20 -52.49 -0.22 1.14 16 40 H 0.13 2.07 7.81 -52.48 -0.41 1.66 16 41 H 0.05 0.73 7.20 -51.93 -0.37 0.35 16 42 H 0.08 1.41 6.96 -51.93 -0.36 1.05 16 43 H 0.07 1.06 4.93 -51.93 -0.26 0.80 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 46 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 47 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.16 2.03 4.16 -52.49 -0.22 1.81 16 49 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -31.71 378.41 -8.56 -40.26 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.60 Total: 2.30 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.69 Total: -8.89 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.14 Total: -37.96 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.09 Total: -17.59 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.71 -8.56 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449839531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.157 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds