Wall clock time and date at job start Tue Mar 31 2020 13:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47484 * 2 1 4 4 C 1.52998 * 109.47316 * 174.99705 * 3 2 1 5 5 C 1.53002 * 109.47121 * 184.99746 * 4 3 2 6 6 O 1.42906 * 109.46963 * 294.99906 * 3 2 1 7 7 C 1.35709 * 116.99559 * 98.64710 * 6 3 2 8 8 C 1.38992 * 119.91630 * 354.42413 * 7 6 3 9 9 C 1.37703 * 120.08677 * 180.02562 * 8 7 6 10 10 C 1.39725 * 119.91485 * 359.97438 * 9 8 7 11 11 C 1.47611 * 120.09075 * 180.02562 * 10 9 8 12 12 O 1.21582 * 119.99453 * 22.41647 * 11 10 9 13 13 N 1.34769 * 119.99943 * 202.41123 * 11 10 9 14 14 C 1.46501 * 120.00511 * 4.75691 * 13 11 10 15 15 C 1.46500 * 120.00011 * 184.75585 * 13 11 10 16 16 H 1.09005 * 109.47133 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47408 * 120.00427 * 15 13 11 18 18 C 1.50707 * 109.47103 * 240.00313 * 15 13 11 19 19 H 1.07996 * 119.99639 * 359.97438 * 18 15 13 20 20 C 1.37874 * 119.99727 * 179.97438 * 18 15 13 21 21 N 1.31523 * 120.00229 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99960 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46897 * 90.00231 * 22 20 18 24 24 H 1.48493 * 109.47250 * 210.00291 * 22 20 18 25 25 H 1.48499 * 109.46920 * 330.00594 * 22 20 18 26 26 C 1.39735 * 119.82409 * 0.27600 * 10 9 8 27 27 C 1.37703 * 119.90783 * 359.47222 * 26 10 9 28 28 H 1.08997 * 109.47416 * 300.00203 * 1 2 3 29 29 H 1.08996 * 109.46752 * 60.00299 * 1 2 3 30 30 H 1.09008 * 109.47435 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47199 * 239.99262 * 2 1 3 32 32 H 1.09006 * 109.47141 * 120.00044 * 2 1 3 33 33 H 1.08998 * 109.46817 * 54.99769 * 3 2 1 34 34 H 1.08996 * 109.47438 * 305.00195 * 4 3 2 35 35 H 1.09004 * 109.47055 * 65.00418 * 4 3 2 36 36 H 1.09000 * 109.46709 * 59.99895 * 5 4 3 37 37 H 1.08999 * 109.46789 * 180.02562 * 5 4 3 38 38 H 1.08996 * 109.47331 * 300.00514 * 5 4 3 39 39 H 1.07999 * 119.95750 * 359.97438 * 8 7 6 40 40 H 1.08005 * 120.04394 * 179.97438 * 9 8 7 41 41 H 1.08999 * 109.47361 * 264.20753 * 14 13 11 42 42 H 1.08998 * 109.47688 * 144.19627 * 14 13 11 43 43 H 1.09001 * 109.46984 * 24.20035 * 14 13 11 44 44 H 1.09004 * 109.46963 * 299.99843 * 17 15 13 45 45 H 1.08998 * 109.47312 * 60.00106 * 17 15 13 46 46 H 1.09001 * 109.47612 * 180.02562 * 17 15 13 47 47 H 0.97001 * 119.99883 * 179.97438 * 21 20 18 48 48 H 1.07998 * 120.04609 * 179.69799 * 26 10 9 49 49 H 1.08000 * 119.95633 * 180.25160 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4442 0.1258 5 6 4.0646 2.8849 0.2511 6 8 1.6620 2.0813 -1.2211 7 6 0.5589 2.8710 -1.1874 8 6 -0.2120 2.9361 -0.0326 9 6 -1.3323 3.7358 0.0053 10 6 -1.6936 4.4829 -1.1188 11 6 -2.8935 5.3419 -1.0822 12 8 -3.3317 5.7288 -0.0162 13 7 -3.5030 5.6973 -2.2304 14 6 -3.0388 5.1480 -3.5068 15 6 -4.6299 6.6330 -2.2024 16 1 -4.8288 6.9315 -1.1730 17 6 -4.2864 7.8702 -3.0343 18 6 -5.8522 5.9647 -2.7772 19 1 -5.7952 4.9452 -3.1287 20 6 -7.0432 6.6550 -2.8543 21 7 -7.1125 7.8969 -2.4267 22 14 -8.5582 5.8269 -3.5675 23 1 -9.3088 5.1478 -2.4810 24 1 -9.4268 6.8486 -4.2054 25 1 -8.1434 4.8261 -4.5831 26 6 -0.9190 4.4107 -2.2795 27 6 0.2029 3.6126 -2.3078 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6054 1.9814 0.8418 34 1 3.8571 0.8799 1.0113 35 1 4.0030 0.9835 -0.7596 36 1 3.6264 3.3456 1.1364 37 1 5.1509 2.8861 0.3403 38 1 3.7723 3.4492 -0.6344 39 1 0.0677 2.3581 0.8358 40 1 -1.9310 3.7856 0.9029 41 1 -2.3484 5.8496 -3.9748 42 1 -3.8927 4.9850 -4.1643 43 1 -2.5298 4.2003 -3.3308 44 1 -3.4023 8.3536 -2.6185 45 1 -4.0873 7.5722 -4.0636 46 1 -5.1246 8.5667 -3.0130 47 1 -7.9503 8.3826 -2.4814 48 1 -1.1977 4.9828 -3.1521 49 1 0.8044 3.5593 -3.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449839531.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:08 Heat of formation + Delta-G solvation = -53.608847 kcal Electronic energy + Delta-G solvation = -27325.229333 eV Core-core repulsion = 23638.673481 eV Total energy + Delta-G solvation = -3686.555853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76059 -40.77656 -38.44654 -37.22671 -35.48188 -34.88795 -33.18954 -32.33871 -31.73102 -30.26497 -27.99529 -27.40794 -27.30451 -24.75167 -24.28856 -22.93448 -22.56469 -21.48493 -20.49479 -19.39465 -18.56347 -17.95731 -17.42861 -16.97779 -16.62154 -16.40728 -16.16763 -15.66556 -15.31364 -14.95389 -14.87697 -14.72203 -14.48790 -14.32505 -14.09272 -13.97941 -13.73379 -13.67805 -13.48647 -13.26767 -12.98875 -12.96736 -12.73747 -12.66227 -12.53513 -12.47255 -12.22210 -12.13473 -12.10483 -11.82046 -11.79426 -11.31700 -11.26050 -11.20266 -10.72883 -10.50884 -10.00469 -9.43442 -9.11019 -8.15334 -6.32004 -0.02255 0.33438 1.40689 1.42205 1.52234 1.91799 2.18711 2.29386 2.48165 2.84558 3.12625 3.61822 3.69099 3.76894 3.80984 3.94166 4.05831 4.20490 4.26895 4.34649 4.41731 4.46179 4.53254 4.55253 4.62437 4.63563 4.75185 4.87988 4.89241 4.91378 4.97586 5.01233 5.03581 5.05899 5.09045 5.11611 5.15818 5.24892 5.26283 5.36108 5.38979 5.43455 5.47969 5.59771 5.66325 5.68196 6.03483 6.15405 6.43303 6.75276 6.78807 7.28977 7.45068 8.89224 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.002718 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.040737 B =10297.963234 C =10666.335123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.067 3.933 4 C -0.118 4.118 5 C -0.157 4.157 6 O -0.305 6.305 7 C 0.159 3.841 8 C -0.214 4.214 9 C -0.035 4.035 10 C -0.187 4.187 11 C 0.537 3.463 12 O -0.608 6.608 13 N -0.593 5.593 14 C 0.064 3.936 15 C 0.261 3.739 16 H 0.007 0.993 17 C -0.131 4.131 18 C -0.539 4.539 19 H 0.060 0.940 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.966 3.034 23 H -0.283 1.283 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.061 4.061 27 C -0.163 4.163 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.156 0.844 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.020 0.980 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.265 0.735 48 H 0.171 0.829 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.977 -15.794 0.602 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.174 4.174 3 C 0.012 3.988 4 C -0.156 4.156 5 C -0.214 4.214 6 O -0.219 6.219 7 C 0.113 3.887 8 C -0.233 4.233 9 C -0.054 4.054 10 C -0.190 4.190 11 C 0.328 3.672 12 O -0.492 6.492 13 N -0.322 5.322 14 C -0.078 4.078 15 C 0.159 3.841 16 H 0.025 0.975 17 C -0.190 4.190 18 C -0.578 4.578 19 H 0.078 0.922 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.079 4.079 27 C -0.181 4.181 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.174 0.826 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.188 0.812 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 22.747 -15.482 0.952 27.533 hybrid contribution -1.526 0.157 0.217 1.550 sum 21.221 -15.325 1.170 26.202 Atomic orbital electron populations 1.21976 0.96154 1.02358 1.01526 1.22013 0.95861 0.95239 1.04284 1.23001 0.96853 0.93511 0.85458 1.21718 0.91532 0.98257 1.04047 1.21782 1.01768 0.96395 1.01489 1.86083 1.40667 1.58483 1.36640 1.19327 0.86203 0.89268 0.93931 1.21386 0.97349 1.04820 0.99709 1.21003 0.95317 0.92423 0.96659 1.19800 0.97910 1.03714 0.97562 1.18954 0.84030 0.80631 0.83588 1.90672 1.68221 1.58907 1.31424 1.48099 1.32539 1.44567 1.06948 1.22548 1.00890 0.99293 0.85052 1.18575 0.83119 0.86827 0.95562 0.97480 1.21869 0.99391 0.98899 0.98846 1.21564 0.95003 0.99393 1.41799 0.92168 1.25746 1.01713 0.95442 0.95570 1.70027 1.27270 1.10991 1.47342 0.85446 0.78710 0.78332 0.78473 1.20932 1.20349 1.18500 1.22196 0.92136 0.96384 0.97199 1.20633 0.98913 0.99639 0.98959 0.92368 0.93999 0.91696 0.90734 0.88249 0.90071 0.87973 0.90571 0.92969 0.91275 0.93597 0.82646 0.86252 0.90247 0.91316 0.88283 0.96048 0.93108 0.91265 0.92585 0.81236 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.46 71.98 0.61 -1.84 16 2 C -0.14 -1.56 5.64 30.59 0.17 -1.39 16 3 C 0.07 0.91 2.13 30.59 0.07 0.98 16 4 C -0.12 -1.20 5.64 30.59 0.17 -1.03 16 5 C -0.16 -1.91 9.81 71.98 0.71 -1.21 16 6 O -0.31 -5.75 9.12 -90.30 -0.82 -6.57 16 7 C 0.16 3.51 5.65 22.63 0.13 3.64 16 8 C -0.21 -5.03 7.26 22.32 0.16 -4.87 16 9 C -0.03 -1.08 9.58 22.50 0.22 -0.86 16 10 C -0.19 -6.44 5.57 -20.08 -0.11 -6.55 16 11 C 0.54 24.59 7.51 86.72 0.65 25.24 16 12 O -0.61 -33.62 15.89 -3.97 -0.06 -33.68 16 13 N -0.59 -26.59 2.75 -830.47 -2.29 -28.88 16 14 C 0.06 2.08 7.71 127.77 0.99 3.07 16 15 C 0.26 14.11 2.63 44.25 0.12 14.23 16 16 H 0.01 0.47 6.91 -2.38 -0.02 0.45 16 17 C -0.13 -6.47 8.97 71.98 0.65 -5.83 16 18 C -0.54 -30.15 8.04 25.60 0.21 -29.94 16 19 H 0.06 3.28 7.24 -2.91 -0.02 3.26 16 20 C 0.01 0.83 5.30 84.65 0.45 1.28 16 21 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 22 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 C -0.06 -1.62 7.54 22.51 0.17 -1.45 16 27 C -0.16 -3.58 9.97 22.33 0.22 -3.36 16 28 H 0.06 0.86 6.66 -2.39 -0.02 0.85 16 29 H 0.04 0.80 6.47 -2.39 -0.02 0.78 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.08 1.11 5.45 -2.39 -0.01 1.10 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.04 0.71 7.82 -2.39 -0.02 0.69 16 39 H 0.16 2.88 4.20 -2.91 -0.01 2.86 16 40 H 0.12 3.95 7.81 -2.91 -0.02 3.92 16 41 H 0.08 2.13 7.20 -2.39 -0.02 2.12 16 42 H 0.07 2.40 6.96 -2.39 -0.02 2.38 16 43 H 0.10 2.71 4.93 -2.39 -0.01 2.70 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 2.23 7.67 -2.39 -0.02 2.22 16 46 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 47 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.17 3.94 4.16 -2.91 -0.01 3.93 16 49 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -73.08 378.41 5.61 -67.47 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.95 Total: 19.32 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.56 Total: -9.89 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.04 Total: -82.46 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.89 Total: -40.25 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.08 5.61 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449839531.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.861 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds