Wall clock time and date at job start Tue Mar 31 2020 12:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 6 6 C 1.50694 * 109.46840 * 294.99979 * 5 3 2 7 7 C 1.38235 * 120.00157 * 269.72093 * 6 5 3 8 8 C 1.38234 * 120.00050 * 179.76812 * 7 6 5 9 9 C 1.38237 * 120.00003 * 0.50950 * 8 7 6 10 10 C 1.38233 * 119.99845 * 359.74726 * 9 8 7 11 11 C 1.38235 * 120.00131 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 13 13 O 1.21287 * 119.99933 * 354.99978 * 12 3 2 14 14 N 1.34776 * 120.00542 * 175.00114 * 12 3 2 15 15 C 1.46493 * 120.00207 * 180.02562 * 14 12 3 16 16 C 1.53003 * 109.47145 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46917 * 299.99734 * 16 15 14 18 18 C 1.52996 * 109.47349 * 59.99524 * 16 15 14 19 19 C 1.53005 * 109.47261 * 180.02562 * 16 15 14 20 20 C 1.50696 * 109.47051 * 179.97438 * 19 16 15 21 21 H 1.07999 * 120.00237 * 0.02562 * 20 19 16 22 22 C 1.37881 * 119.99860 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99748 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99822 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47400 * 89.99909 * 24 22 20 26 26 H 1.48503 * 109.46504 * 209.99630 * 24 22 20 27 27 H 1.48492 * 109.47016 * 329.99358 * 24 22 20 28 28 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46614 * 55.00101 * 5 3 2 32 32 H 1.09002 * 109.47166 * 174.99410 * 5 3 2 33 33 H 1.08001 * 119.99908 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.99803 * 180.23221 * 8 7 6 35 35 H 1.07999 * 119.99970 * 179.72222 * 9 8 7 36 36 H 1.07997 * 119.99981 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.00096 * 179.97438 * 11 10 9 38 38 H 0.97007 * 119.99870 * 0.02562 * 14 12 3 39 39 H 1.09006 * 109.47562 * 299.99903 * 15 14 12 40 40 H 1.09000 * 109.47280 * 59.99894 * 15 14 12 41 41 H 1.09006 * 109.47350 * 59.99976 * 17 16 15 42 42 H 1.09002 * 109.47243 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47556 * 300.00081 * 17 16 15 44 44 H 1.09007 * 109.47069 * 60.00371 * 18 16 15 45 45 H 1.08997 * 109.47134 * 179.97438 * 18 16 15 46 46 H 1.08999 * 109.47636 * 300.00397 * 18 16 15 47 47 H 1.08995 * 109.46744 * 299.99867 * 19 16 15 48 48 H 1.09000 * 109.47314 * 59.99505 * 19 16 15 49 49 H 0.97003 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2634 0.7213 6 6 3.1416 0.9237 2.1732 7 6 2.9464 1.9330 3.0975 8 6 2.7423 1.6211 4.4286 9 6 2.7439 0.3006 4.8373 10 6 2.9443 -0.7084 3.9139 11 6 3.1427 -0.3969 2.5818 12 6 2.2145 1.7645 -1.4208 13 8 1.9791 1.0107 -2.3414 14 7 2.6587 3.0125 -1.6686 15 6 2.8568 3.4588 -3.0498 16 6 3.3628 4.9027 -3.0516 17 6 2.3339 5.8045 -2.3669 18 6 4.6908 4.9788 -2.2957 19 6 3.5691 5.3691 -4.4942 20 6 4.0669 6.7915 -4.4960 21 1 4.2211 7.3108 -3.5617 22 6 4.3264 7.4295 -5.6904 23 7 4.7603 8.6710 -5.6919 24 14 4.0602 6.5310 -7.3063 25 1 2.6689 6.7556 -7.7743 26 1 5.0133 7.0463 -8.3219 27 1 4.2869 5.0771 -7.1074 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9931 0.5053 0.2617 32 1 3.8427 2.2371 0.6442 33 1 2.9493 2.9649 2.7789 34 1 2.5861 2.4095 5.1501 35 1 2.5889 0.0572 5.8780 36 1 2.9459 -1.7401 4.2332 37 1 3.2997 -1.1852 1.8605 38 1 2.8474 3.6153 -0.9324 39 1 3.5902 2.8166 -3.5376 40 1 1.9108 3.4043 -3.5885 41 1 2.1864 5.4725 -1.3392 42 1 2.6941 6.8333 -2.3686 43 1 1.3877 5.7504 -2.9054 44 1 5.4239 4.3363 -2.7835 45 1 5.0515 6.0073 -2.2974 46 1 4.5435 4.6467 -1.2680 47 1 4.3019 4.7267 -4.9824 48 1 2.6227 5.3150 -5.0324 49 1 4.9425 9.1200 -6.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451781446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:16 Heat of formation + Delta-G solvation = -76.454853 kcal Electronic energy + Delta-G solvation = -27013.774084 eV Core-core repulsion = 23326.227555 eV Total energy + Delta-G solvation = -3687.546530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32952 -39.29697 -37.89264 -36.82088 -34.09307 -33.32030 -32.09531 -31.11494 -29.73390 -27.84233 -26.71456 -26.60017 -26.26434 -24.43135 -22.79289 -22.36451 -21.34607 -20.29510 -18.51545 -17.39792 -17.08873 -17.00503 -16.72561 -15.90463 -15.32108 -15.15516 -15.14903 -14.77969 -14.61067 -14.07725 -13.76794 -13.64716 -13.57538 -13.46847 -13.07433 -12.93827 -12.77015 -12.51228 -12.34101 -12.28655 -11.93666 -11.43447 -11.32336 -11.26311 -11.17665 -11.12471 -11.03335 -10.65441 -10.63149 -10.52161 -10.00449 -9.79168 -9.69491 -9.30611 -9.13888 -9.02205 -8.88518 -8.85298 -8.55492 -6.06295 -4.03641 1.08153 1.18078 2.63539 3.12216 3.30103 3.38349 3.42380 3.55929 3.61494 4.39878 4.43938 4.60549 4.72156 4.75865 4.80840 4.85598 4.94379 5.10986 5.15990 5.26224 5.26882 5.29370 5.36171 5.43228 5.49253 5.53096 5.57893 5.60629 5.80408 5.82912 6.06259 6.07813 6.14314 6.22195 6.27234 6.28199 6.38702 6.43309 6.55718 6.63872 6.75752 6.81125 6.87913 6.98200 7.01852 7.17392 7.33875 7.60450 7.76985 8.29776 8.50576 8.97577 9.56468 11.06382 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.002624 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.648226 B =10669.712356 C =11476.489681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.081 3.919 4 H 0.085 0.915 5 C -0.075 4.075 6 C -0.079 4.079 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.124 4.124 10 C -0.123 4.123 11 C -0.097 4.097 12 C 0.484 3.516 13 O -0.529 6.529 14 N -0.719 5.719 15 C 0.125 3.875 16 C -0.063 4.063 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.002 4.002 20 C -0.511 4.511 21 H 0.078 0.922 22 C 0.067 3.933 23 N -0.903 5.903 24 Si 0.875 3.125 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.265 1.265 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.031 0.969 47 H 0.018 0.982 48 H 0.013 0.987 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -15.975 20.557 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.019 3.981 4 H 0.103 0.897 5 C -0.113 4.113 6 C -0.079 4.079 7 C -0.136 4.136 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.141 4.141 11 C -0.115 4.115 12 C 0.268 3.732 13 O -0.405 6.405 14 N -0.373 5.373 15 C 0.002 3.998 16 C -0.063 4.063 17 C -0.186 4.186 18 C -0.186 4.186 19 C -0.040 4.040 20 C -0.549 4.549 21 H 0.096 0.904 22 C -0.134 4.134 23 N -0.543 5.543 24 Si 0.702 3.298 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.873 -16.563 19.755 26.440 hybrid contribution -0.290 0.204 -0.678 0.765 sum -6.162 -16.359 19.078 25.875 Atomic orbital electron populations 1.22829 0.80711 1.03059 0.99940 1.87968 1.19954 1.24704 1.94383 1.22020 0.96541 0.87168 0.92340 0.89697 1.20677 0.94992 1.04100 0.91494 1.19692 1.00078 0.93633 0.94540 1.21104 1.00251 0.99016 0.93206 1.21122 1.00414 0.96526 0.95921 1.21155 1.00502 0.93091 0.99485 1.21162 1.00262 0.99253 0.93381 1.21104 0.98626 0.96027 0.95783 1.21276 0.77878 0.82169 0.91845 1.90711 1.50009 1.53805 1.45952 1.46231 1.67031 1.13874 1.10136 1.21652 1.00879 0.96076 0.81154 1.20689 0.95217 0.91072 0.99332 1.21781 0.98354 1.01267 0.97213 1.21772 0.96592 1.03283 0.96931 1.19594 0.96526 0.97624 0.90272 1.21068 1.43698 0.95698 0.94414 0.90385 1.25001 0.94728 0.94680 0.99034 1.69900 1.46114 1.11425 1.26819 0.86860 0.78159 0.80806 0.83963 1.20391 1.21488 1.18987 0.93646 0.94120 0.89358 0.89214 0.88866 0.85926 0.86124 0.86335 0.86203 0.85751 0.76606 0.91754 0.91878 0.95071 0.90813 0.93429 0.93348 0.90835 0.95033 0.96346 0.96837 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.35 -4.31 9.38 -55.09 -0.52 -4.83 16 3 C 0.08 0.88 2.50 -27.88 -0.07 0.81 16 4 H 0.09 0.77 7.79 -51.93 -0.40 0.37 16 5 C -0.08 -0.70 5.03 -27.88 -0.14 -0.84 16 6 C -0.08 -0.73 4.97 -104.63 -0.52 -1.24 16 7 C -0.12 -0.97 9.70 -39.58 -0.38 -1.36 16 8 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 9 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 10 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 11 C -0.10 -0.89 9.40 -39.58 -0.37 -1.27 16 12 C 0.48 6.86 7.13 -10.99 -0.08 6.78 16 13 O -0.53 -9.80 16.51 -14.31 -0.24 -10.04 16 14 N -0.72 -9.51 4.86 -60.29 -0.29 -9.80 16 15 C 0.13 2.04 4.56 -4.04 -0.02 2.02 16 16 C -0.06 -1.11 0.54 -154.51 -0.08 -1.19 16 17 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 18 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 19 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 20 C -0.51 -13.47 8.20 -34.44 -0.28 -13.75 16 21 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 22 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 23 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 24 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.09 0.73 7.71 -51.93 -0.40 0.33 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.40 4.30 5.87 -40.82 -0.24 4.06 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.07 1.39 6.62 -51.93 -0.34 1.04 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 46 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 47 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 48 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -32.38 393.23 -8.83 -41.21 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.18 Total: 1.80 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.64 Total: -14.76 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.48 Total: -36.02 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.75 Total: -14.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.38 -8.83 -41.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451781446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.242 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds