Wall clock time and date at job start Tue Mar 31 2020 12:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.08999 * 109.47444 * 29.99805 * 3 2 1 5 5 C 1.53006 * 109.47213 * 150.00082 * 3 2 1 6 6 C 1.50694 * 109.46840 * 294.99979 * 5 3 2 7 7 C 1.38235 * 120.00157 * 269.72093 * 6 5 3 8 8 C 1.38234 * 120.00050 * 179.76812 * 7 6 5 9 9 C 1.38237 * 120.00003 * 0.50950 * 8 7 6 10 10 C 1.38233 * 119.99845 * 359.74726 * 9 8 7 11 11 C 1.38235 * 120.00131 * 359.97438 * 10 9 8 12 12 C 1.50700 * 109.47377 * 270.00006 * 3 2 1 13 13 O 1.21287 * 119.99933 * 354.99978 * 12 3 2 14 14 N 1.34776 * 120.00542 * 175.00114 * 12 3 2 15 15 C 1.46493 * 120.00207 * 180.02562 * 14 12 3 16 16 C 1.53003 * 109.47145 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.46917 * 299.99734 * 16 15 14 18 18 C 1.52996 * 109.47349 * 59.99524 * 16 15 14 19 19 C 1.53005 * 109.47261 * 180.02562 * 16 15 14 20 20 C 1.50696 * 109.47051 * 179.97438 * 19 16 15 21 21 H 1.07999 * 120.00237 * 0.02562 * 20 19 16 22 22 C 1.37881 * 119.99860 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99748 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99822 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47400 * 89.99909 * 24 22 20 26 26 H 1.48503 * 109.46504 * 209.99630 * 24 22 20 27 27 H 1.48492 * 109.47016 * 329.99358 * 24 22 20 28 28 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 30 30 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46614 * 55.00101 * 5 3 2 32 32 H 1.09002 * 109.47166 * 174.99410 * 5 3 2 33 33 H 1.08001 * 119.99908 * 0.02562 * 7 6 5 34 34 H 1.08002 * 119.99803 * 180.23221 * 8 7 6 35 35 H 1.07999 * 119.99970 * 179.72222 * 9 8 7 36 36 H 1.07997 * 119.99981 * 179.97438 * 10 9 8 37 37 H 1.08004 * 120.00096 * 179.97438 * 11 10 9 38 38 H 0.97007 * 119.99870 * 0.02562 * 14 12 3 39 39 H 1.09006 * 109.47562 * 299.99903 * 15 14 12 40 40 H 1.09000 * 109.47280 * 59.99894 * 15 14 12 41 41 H 1.09006 * 109.47350 * 59.99976 * 17 16 15 42 42 H 1.09002 * 109.47243 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47556 * 300.00081 * 17 16 15 44 44 H 1.09007 * 109.47069 * 60.00371 * 18 16 15 45 45 H 1.08997 * 109.47134 * 179.97438 * 18 16 15 46 46 H 1.08999 * 109.47636 * 300.00397 * 18 16 15 47 47 H 1.08995 * 109.46744 * 299.99867 * 19 16 15 48 48 H 1.09000 * 109.47314 * 59.99505 * 19 16 15 49 49 H 0.97003 * 119.99735 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2634 0.7213 6 6 3.1416 0.9237 2.1732 7 6 2.9464 1.9330 3.0975 8 6 2.7423 1.6211 4.4286 9 6 2.7439 0.3006 4.8373 10 6 2.9443 -0.7084 3.9139 11 6 3.1427 -0.3969 2.5818 12 6 2.2145 1.7645 -1.4208 13 8 1.9791 1.0107 -2.3414 14 7 2.6587 3.0125 -1.6686 15 6 2.8568 3.4588 -3.0498 16 6 3.3628 4.9027 -3.0516 17 6 2.3339 5.8045 -2.3669 18 6 4.6908 4.9788 -2.2957 19 6 3.5691 5.3691 -4.4942 20 6 4.0669 6.7915 -4.4960 21 1 4.2211 7.3108 -3.5617 22 6 4.3264 7.4295 -5.6904 23 7 4.7603 8.6710 -5.6919 24 14 4.0602 6.5310 -7.3063 25 1 2.6689 6.7556 -7.7743 26 1 5.0133 7.0463 -8.3219 27 1 4.2869 5.0771 -7.1074 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9931 0.5053 0.2617 32 1 3.8427 2.2371 0.6442 33 1 2.9493 2.9649 2.7789 34 1 2.5861 2.4095 5.1501 35 1 2.5889 0.0572 5.8780 36 1 2.9459 -1.7401 4.2332 37 1 3.2997 -1.1852 1.8605 38 1 2.8474 3.6153 -0.9324 39 1 3.5902 2.8166 -3.5376 40 1 1.9108 3.4043 -3.5885 41 1 2.1864 5.4725 -1.3392 42 1 2.6941 6.8333 -2.3686 43 1 1.3877 5.7504 -2.9054 44 1 5.4239 4.3363 -2.7835 45 1 5.0515 6.0073 -2.2974 46 1 4.5435 4.6467 -1.2680 47 1 4.3019 4.7267 -4.9824 48 1 2.6227 5.3150 -5.0324 49 1 4.9425 9.1200 -6.5322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451781446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:15 Heat of formation + Delta-G solvation = -94.779061 kcal Electronic energy + Delta-G solvation = -27014.568682 eV Core-core repulsion = 23326.227555 eV Total energy + Delta-G solvation = -3688.341127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34514 -40.03616 -39.04449 -38.01576 -35.33671 -34.49182 -33.77130 -31.68187 -30.59253 -29.62224 -27.96994 -27.77405 -27.17875 -25.48778 -24.07118 -23.36676 -22.03145 -21.39385 -19.90399 -18.90794 -18.45186 -17.93358 -17.63138 -16.82536 -16.46472 -16.14306 -15.92057 -15.84190 -15.77422 -15.51718 -15.19312 -15.05217 -14.46906 -14.22150 -14.18725 -14.13481 -13.93849 -13.73661 -13.59629 -13.17315 -12.93661 -12.84195 -12.70648 -12.58826 -12.29824 -12.16130 -12.14115 -11.96565 -11.78011 -11.75192 -11.58715 -11.50354 -11.22745 -10.91687 -10.70643 -10.35836 -10.08176 -9.72556 -9.53892 -8.22601 -6.22256 0.48310 0.59608 1.34836 1.38157 1.47699 1.55051 2.07538 2.38526 2.77427 2.95818 3.12985 3.59042 3.87599 3.92989 4.00574 4.05201 4.07478 4.14149 4.16917 4.25911 4.38500 4.44991 4.47996 4.53483 4.64363 4.71007 4.71464 4.78845 4.80483 4.86478 4.90929 4.96533 5.02637 5.11113 5.21429 5.26252 5.30342 5.36129 5.41830 5.46427 5.56846 5.65431 5.70994 5.71515 5.77002 5.77699 6.00243 6.20586 6.38063 6.56556 6.84762 7.21917 7.40500 8.92868 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.002624 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.648226 B =10669.712356 C =11476.489681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.372 6.372 3 C 0.088 3.912 4 H 0.111 0.889 5 C -0.070 4.070 6 C -0.089 4.089 7 C -0.123 4.123 8 C -0.129 4.129 9 C -0.130 4.130 10 C -0.132 4.132 11 C -0.114 4.114 12 C 0.485 3.515 13 O -0.576 6.576 14 N -0.705 5.705 15 C 0.138 3.862 16 C -0.057 4.057 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.005 4.005 20 C -0.499 4.499 21 H 0.055 0.945 22 C 0.006 3.994 23 N -0.950 5.950 24 Si 0.932 3.068 25 H -0.272 1.272 26 H -0.289 1.289 27 H -0.253 1.253 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.013 0.987 48 H 0.012 0.988 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.662 -17.094 22.681 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.027 3.973 4 H 0.129 0.871 5 C -0.108 4.108 6 C -0.089 4.089 7 C -0.141 4.141 8 C -0.146 4.146 9 C -0.147 4.147 10 C -0.149 4.149 11 C -0.132 4.132 12 C 0.271 3.729 13 O -0.456 6.456 14 N -0.360 5.360 15 C 0.014 3.986 16 C -0.057 4.057 17 C -0.182 4.182 18 C -0.182 4.182 19 C -0.043 4.043 20 C -0.538 4.538 21 H 0.073 0.927 22 C -0.190 4.190 23 N -0.592 5.592 24 Si 0.757 3.243 25 H -0.198 1.198 26 H -0.215 1.215 27 H -0.177 1.177 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.031 0.969 48 H 0.030 0.970 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.678 -17.682 21.917 28.941 hybrid contribution -0.050 0.540 -1.230 1.344 sum -6.728 -17.142 20.687 27.696 Atomic orbital electron populations 1.22955 0.79749 1.03992 1.00174 1.87960 1.21157 1.25589 1.94236 1.22100 0.97922 0.87238 0.90062 0.87120 1.20664 0.93871 1.04723 0.91496 1.19693 1.00954 0.93849 0.94432 1.21351 0.99800 0.99679 0.93279 1.21436 0.99825 0.97130 0.96256 1.21458 0.99799 0.93091 1.00401 1.21383 1.00126 1.00292 0.93149 1.21196 0.99505 0.96208 0.96293 1.21938 0.76488 0.81565 0.92865 1.90694 1.52050 1.55076 1.47731 1.46022 1.66593 1.14075 1.09273 1.21281 0.99929 0.94620 0.82801 1.20546 0.96451 0.92133 0.96616 1.21717 0.97452 0.99465 0.99542 1.21713 0.95594 1.01624 0.99240 1.19582 0.95844 0.95126 0.93743 1.21362 1.41825 0.97275 0.93289 0.92727 1.25813 0.95184 0.95390 1.02658 1.70035 1.48436 1.13167 1.27571 0.85930 0.78155 0.80193 0.79991 1.19786 1.21509 1.17708 0.95031 0.92082 0.88313 0.90543 0.86996 0.84121 0.84251 0.84476 0.84944 0.86482 0.74792 0.92892 0.92850 0.90969 0.93509 0.93795 0.93798 0.93526 0.90878 0.96866 0.97012 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.81 113.37 1.23 1.72 16 2 O -0.37 -8.56 9.38 -129.99 -1.22 -9.78 16 3 C 0.09 1.72 2.50 29.85 0.07 1.79 16 4 H 0.11 1.60 7.79 -2.39 -0.02 1.58 16 5 C -0.07 -1.14 5.03 29.85 0.15 -0.99 16 6 C -0.09 -1.43 4.97 -19.87 -0.10 -1.53 16 7 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 8 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 9 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 10 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 11 C -0.11 -1.94 9.40 22.27 0.21 -1.73 16 12 C 0.48 12.84 7.13 87.66 0.63 13.47 16 13 O -0.58 -21.01 16.51 15.94 0.26 -20.75 16 14 N -0.70 -16.76 4.86 -463.06 -2.25 -19.01 16 15 C 0.14 4.27 4.56 86.38 0.39 4.66 16 16 C -0.06 -1.94 0.54 -52.18 -0.03 -1.97 16 17 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 18 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 19 C -0.01 -0.22 3.11 29.85 0.09 -0.13 16 20 C -0.50 -26.70 8.20 25.60 0.21 -26.49 16 21 H 0.05 3.13 5.92 -2.91 -0.02 3.11 16 22 C 0.01 0.33 5.47 84.66 0.46 0.79 16 23 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 24 Si 0.93 44.31 27.47 68.60 1.88 46.20 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 32 H 0.11 1.35 7.71 -2.39 -0.02 1.33 16 33 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.41 7.22 5.87 -92.70 -0.54 6.68 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 1.65 6.86 -2.38 -0.02 1.63 16 42 H 0.05 1.73 6.62 -2.39 -0.02 1.71 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.05 1.73 6.62 -2.39 -0.02 1.71 16 46 H 0.07 1.66 6.86 -2.39 -0.02 1.65 16 47 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 48 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 49 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.91 393.23 4.67 -67.25 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.32 Total: 16.97 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 5.36 Total: -23.01 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.95 Total: -76.88 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.96 Total: -30.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -71.91 4.67 -67.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451781446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.532 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds