Wall clock time and date at job start Tue Mar 31 2020 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47210 * 239.99650 * 2 1 3 5 5 O 1.42902 * 109.47299 * 60.00479 * 4 2 1 6 6 C 1.53001 * 109.46799 * 119.99463 * 2 1 3 7 7 C 1.52995 * 109.47356 * 300.00470 * 6 2 1 8 8 N 1.46506 * 109.47121 * 179.97438 * 7 6 2 9 9 C 1.34769 * 119.99929 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.09002 * 109.47815 * 300.00319 * 1 2 3 29 29 H 1.09005 * 109.47284 * 60.00242 * 1 2 3 30 30 H 1.09004 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46751 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47135 * 299.99289 * 3 2 1 33 33 H 1.08996 * 109.47310 * 59.99975 * 3 2 1 34 34 H 1.08999 * 109.46786 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47167 * 300.00133 * 4 2 1 36 36 H 0.96693 * 114.00063 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46707 * 179.97438 * 6 2 1 38 38 H 1.09003 * 109.46778 * 60.00864 * 6 2 1 39 39 H 1.08999 * 109.47126 * 60.00134 * 7 6 2 40 40 H 1.09003 * 109.46688 * 299.99513 * 7 6 2 41 41 H 0.97005 * 119.99423 * 0.02562 * 8 7 6 42 42 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 43 43 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 44 44 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 45 45 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 46 46 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 47 47 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 48 48 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5638 -0.0477 -2.4160 6 6 2.0399 -0.7212 1.2493 7 6 1.5298 0.0001 2.4985 8 7 2.0176 -0.6908 3.6948 9 6 1.6923 -0.2301 4.9188 10 8 0.9953 0.7562 5.0300 11 6 2.1936 -0.9411 6.1493 12 6 1.6836 -0.2198 7.3985 13 1 0.5994 -0.1221 7.3444 14 6 2.3082 1.1494 7.4780 15 1 3.3241 1.2997 7.1440 16 6 1.5825 2.2101 7.9774 17 7 2.1181 3.4105 8.0212 18 14 -0.1611 1.9422 8.5916 19 1 -1.1203 2.2065 7.4893 20 1 -0.3129 0.5394 9.0543 21 1 -0.4361 2.8680 9.7197 22 6 2.0558 -1.0137 8.6241 23 6 3.3842 -1.1524 8.9807 24 6 3.7254 -1.8774 10.1072 25 6 2.7387 -2.4705 10.8725 26 6 1.4107 -2.3362 10.5129 27 6 1.0693 -1.6080 9.3887 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 -0.7209 -1.2493 35 1 1.6767 -1.7489 -1.2491 36 1 1.8495 -0.4510 -3.2471 37 1 3.1300 -0.7215 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 0.4398 0.0000 2.4984 40 1 1.8932 1.0278 2.4984 41 1 2.5754 -1.4795 3.6057 42 1 3.2836 -0.9423 6.1495 43 1 1.8292 -1.9685 6.1491 44 1 1.6075 4.1568 8.3721 45 1 4.1553 -0.6922 8.3808 46 1 4.7629 -1.9826 10.3879 47 1 3.0054 -3.0392 11.7510 48 1 0.6398 -2.7999 11.1106 49 1 0.0317 -1.5027 9.1080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452431396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:32 Heat of formation + Delta-G solvation = -83.357141 kcal Electronic energy + Delta-G solvation = -26839.073900 eV Core-core repulsion = 23151.228065 eV Total energy + Delta-G solvation = -3687.845835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.39630 -38.73780 -38.17109 -35.94346 -34.19198 -33.58929 -31.63736 -30.19901 -29.56284 -28.30650 -27.36289 -26.77584 -25.76569 -23.13518 -22.31486 -21.81021 -20.24504 -19.31702 -18.66536 -17.60811 -16.90782 -16.43463 -16.02652 -15.69411 -15.52092 -15.06685 -14.60973 -14.35153 -14.25476 -13.92052 -13.81814 -13.53607 -13.02918 -12.83977 -12.81295 -12.71527 -12.50500 -12.26781 -11.94283 -11.90396 -11.81875 -11.77854 -11.30265 -11.03207 -10.95600 -10.79488 -10.72125 -10.52847 -10.50422 -10.32558 -10.22934 -9.85094 -9.58514 -9.13176 -8.90472 -8.53316 -8.38672 -8.18743 -7.79783 -5.94926 -3.92292 2.11014 2.15933 3.45922 3.50351 3.51918 3.53591 3.59624 4.06251 4.53974 4.56280 4.60529 4.61716 4.85434 5.08967 5.16069 5.19210 5.33912 5.35033 5.46729 5.52978 5.54332 5.57314 5.65670 5.70665 5.73316 5.87517 5.88644 5.95251 5.97117 6.03001 6.05274 6.09968 6.15765 6.26333 6.30475 6.34676 6.34968 6.64413 6.70972 6.85394 6.93740 7.04665 7.15551 7.28876 7.34470 7.59996 7.75084 7.85359 8.08350 8.56120 9.02957 9.06588 9.70107 11.18164 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002948 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.508774 B = 9494.184725 C =10416.544627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.143 4.143 4 C 0.087 3.913 5 O -0.569 6.569 6 C -0.120 4.120 7 C 0.120 3.880 8 N -0.750 5.750 9 C 0.513 3.487 10 O -0.501 6.501 11 C -0.117 4.117 12 C 0.057 3.943 13 H 0.049 0.951 14 C -0.488 4.488 15 H 0.070 0.930 16 C 0.086 3.914 17 N -0.900 5.900 18 Si 0.870 3.130 19 H -0.276 1.276 20 H -0.255 1.255 21 H -0.295 1.295 22 C -0.040 4.040 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.376 0.624 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.392 0.608 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -13.758 -13.796 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C -0.201 4.201 4 C 0.009 3.991 5 O -0.374 6.374 6 C -0.158 4.158 7 C -0.004 4.004 8 N -0.405 5.405 9 C 0.299 3.701 10 O -0.373 6.373 11 C -0.157 4.157 12 C 0.037 3.963 13 H 0.068 0.932 14 C -0.525 4.525 15 H 0.088 0.912 16 C -0.116 4.116 17 N -0.537 5.537 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.180 1.180 21 H -0.222 1.222 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.153 4.153 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.222 0.778 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.461 -12.403 -13.185 18.107 hybrid contribution -0.279 -0.685 -0.013 0.740 sum 0.182 -13.088 -13.198 18.588 Atomic orbital electron populations 1.21881 0.93816 1.01730 1.02537 1.20478 0.96733 0.96342 0.92428 1.21887 1.00687 0.94900 1.02588 1.22210 0.97033 0.94475 0.85374 1.86487 1.77509 1.57418 1.15961 1.21775 1.01182 0.99472 0.93380 1.21313 0.99279 0.96695 0.83135 1.46147 1.55923 1.32612 1.05813 1.20814 0.80473 0.84858 0.83946 1.90745 1.35989 1.24472 1.86098 1.21661 1.01974 0.98190 0.93870 1.18124 0.97720 0.94277 0.86161 0.93242 1.20593 1.00703 0.89380 1.41829 0.91166 1.24878 0.97504 0.94832 0.94424 1.69887 1.37600 0.99875 1.46381 0.86960 0.86267 0.78746 0.78266 1.20226 1.17969 1.22168 1.20779 0.92755 0.92097 0.98409 1.20984 0.96614 0.97580 0.96669 1.21057 0.98476 0.99050 0.96059 1.20860 0.93270 1.02424 1.00206 1.20963 0.95916 1.00237 0.97466 1.21151 0.99146 0.98715 0.96310 0.91950 0.91890 0.92993 0.92856 0.91899 0.91837 0.93708 0.93786 0.77769 0.91177 0.91328 0.91717 0.91361 0.77532 0.89823 0.91444 0.92907 0.86192 0.87212 0.87465 0.87424 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.97 37.16 0.30 -1.16 16 2 C -0.06 -0.57 0.63 -154.51 -0.10 -0.67 16 3 C -0.14 -1.55 7.98 37.16 0.30 -1.25 16 4 C 0.09 0.69 5.91 37.15 0.22 0.91 16 5 O -0.57 -4.75 12.31 -35.23 -0.43 -5.18 16 6 C -0.12 -1.14 4.38 -26.73 -0.12 -1.26 16 7 C 0.12 1.61 4.97 -4.04 -0.02 1.59 16 8 N -0.75 -10.89 5.56 -60.29 -0.33 -11.22 16 9 C 0.51 10.06 7.58 -10.99 -0.08 9.98 16 10 O -0.50 -12.49 15.02 5.55 0.08 -12.41 16 11 C -0.12 -2.17 4.96 -27.88 -0.14 -2.30 16 12 C 0.06 1.29 1.17 -92.92 -0.11 1.19 16 13 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 14 C -0.49 -13.46 6.88 -34.44 -0.24 -13.70 16 15 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 16 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 17 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 18 Si 0.87 22.84 27.00 -169.99 -4.59 18.25 16 19 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.26 -6.17 4.72 56.52 0.27 -5.90 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 C -0.04 -0.83 4.65 -104.62 -0.49 -1.32 16 23 C -0.10 -1.96 8.93 -39.58 -0.35 -2.31 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.15 -2.43 10.05 -39.58 -0.40 -2.83 16 26 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 27 C -0.14 -2.65 8.70 -39.59 -0.34 -2.99 16 28 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 29 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 33 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.38 1.46 9.12 45.56 0.42 1.87 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.94 6.43 -51.93 -0.33 0.60 16 40 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 41 H 0.39 4.31 8.47 -40.82 -0.35 3.96 16 42 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 45 H 0.12 2.32 7.87 -52.49 -0.41 1.91 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 49 H 0.11 2.14 7.12 -52.48 -0.37 1.76 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -35.37 387.30 -8.57 -43.94 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.45 Total: 7.27 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.46 Total: -18.87 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.44 Total: -38.83 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.35 Total: -17.59 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.59 Total: 18.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.37 -8.57 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452431396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds