Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47210 * 239.99650 * 2 1 3 5 5 O 1.42902 * 109.47299 * 60.00479 * 4 2 1 6 6 C 1.53001 * 109.46799 * 119.99463 * 2 1 3 7 7 C 1.52995 * 109.47356 * 300.00470 * 6 2 1 8 8 N 1.46506 * 109.47121 * 179.97438 * 7 6 2 9 9 C 1.34769 * 119.99929 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.09002 * 109.47815 * 300.00319 * 1 2 3 29 29 H 1.09005 * 109.47284 * 60.00242 * 1 2 3 30 30 H 1.09004 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46751 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47135 * 299.99289 * 3 2 1 33 33 H 1.08996 * 109.47310 * 59.99975 * 3 2 1 34 34 H 1.08999 * 109.46786 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47167 * 300.00133 * 4 2 1 36 36 H 0.96693 * 114.00063 * 179.97438 * 5 4 2 37 37 H 1.09004 * 109.46707 * 179.97438 * 6 2 1 38 38 H 1.09003 * 109.46778 * 60.00864 * 6 2 1 39 39 H 1.08999 * 109.47126 * 60.00134 * 7 6 2 40 40 H 1.09003 * 109.46688 * 299.99513 * 7 6 2 41 41 H 0.97005 * 119.99423 * 0.02562 * 8 7 6 42 42 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 43 43 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 44 44 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 45 45 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 46 46 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 47 47 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 48 48 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 1.5638 -0.0477 -2.4160 6 6 2.0399 -0.7212 1.2493 7 6 1.5298 0.0001 2.4985 8 7 2.0176 -0.6908 3.6948 9 6 1.6923 -0.2301 4.9188 10 8 0.9953 0.7562 5.0300 11 6 2.1936 -0.9411 6.1493 12 6 1.6836 -0.2198 7.3985 13 1 0.5994 -0.1221 7.3444 14 6 2.3082 1.1494 7.4780 15 1 3.3241 1.2997 7.1440 16 6 1.5825 2.2101 7.9774 17 7 2.1181 3.4105 8.0212 18 14 -0.1611 1.9422 8.5916 19 1 -1.1203 2.2065 7.4893 20 1 -0.3129 0.5394 9.0543 21 1 -0.4361 2.8680 9.7197 22 6 2.0558 -1.0137 8.6241 23 6 3.3842 -1.1524 8.9807 24 6 3.7254 -1.8774 10.1072 25 6 2.7387 -2.4705 10.8725 26 6 1.4107 -2.3362 10.5129 27 6 1.0693 -1.6080 9.3887 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1300 -0.7209 -1.2493 35 1 1.6767 -1.7489 -1.2491 36 1 1.8495 -0.4510 -3.2471 37 1 3.1300 -0.7215 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 0.4398 0.0000 2.4984 40 1 1.8932 1.0278 2.4984 41 1 2.5754 -1.4795 3.6057 42 1 3.2836 -0.9423 6.1495 43 1 1.8292 -1.9685 6.1491 44 1 1.6075 4.1568 8.3721 45 1 4.1553 -0.6922 8.3808 46 1 4.7629 -1.9826 10.3879 47 1 3.0054 -3.0392 11.7510 48 1 0.6398 -2.7999 11.1106 49 1 0.0317 -1.5027 9.1080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452431396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = -108.945662 kcal Electronic energy + Delta-G solvation = -26840.183502 eV Core-core repulsion = 23151.228065 eV Total energy + Delta-G solvation = -3688.955437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81275 -39.92618 -39.33243 -36.81111 -35.84033 -34.92875 -33.70267 -31.59060 -30.88745 -29.57949 -28.22799 -27.72912 -27.34479 -24.57517 -23.59342 -23.21048 -21.71137 -20.84285 -19.58691 -19.00066 -18.30569 -17.85099 -17.25608 -17.03314 -16.61953 -16.35561 -15.98272 -15.78395 -15.46091 -15.18619 -15.11066 -14.80868 -14.58284 -14.29394 -14.14630 -13.86034 -13.78286 -13.60868 -13.47970 -13.26488 -12.92175 -12.79547 -12.74811 -12.64109 -12.24142 -12.05723 -11.89240 -11.80367 -11.75897 -11.68320 -11.47900 -11.29747 -11.03616 -10.80019 -10.71024 -10.49105 -9.89000 -9.59637 -9.28280 -8.21600 -6.18307 0.70118 0.74931 1.31692 1.37079 1.42052 1.95877 2.38080 2.42106 3.10103 3.25076 3.37927 3.79834 3.80552 4.12584 4.14331 4.16694 4.24300 4.29699 4.32334 4.34372 4.47591 4.51107 4.51423 4.62256 4.66082 4.68345 4.71692 4.84094 4.87108 4.88618 4.98788 4.99573 5.07127 5.09815 5.18070 5.21143 5.22141 5.40054 5.42632 5.42997 5.45985 5.66030 5.71022 5.78759 5.84822 6.04650 6.34684 6.38151 6.80274 6.81450 6.98876 7.46203 7.59191 8.95581 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.002948 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.508774 B = 9494.184725 C =10416.544627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.061 4.061 3 C -0.142 4.142 4 C 0.091 3.909 5 O -0.590 6.590 6 C -0.106 4.106 7 C 0.119 3.881 8 N -0.726 5.726 9 C 0.507 3.493 10 O -0.566 6.566 11 C -0.112 4.112 12 C 0.057 3.943 13 H 0.031 0.969 14 C -0.464 4.464 15 H 0.034 0.966 16 C 0.022 3.978 17 N -0.955 5.955 18 Si 0.919 3.081 19 H -0.292 1.292 20 H -0.222 1.222 21 H -0.297 1.297 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.125 4.125 27 C -0.151 4.151 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.414 0.586 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.257 0.743 45 H 0.109 0.891 46 H 0.138 0.862 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -18.158 -13.409 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.199 4.199 4 C 0.013 3.987 5 O -0.398 6.398 6 C -0.144 4.144 7 C -0.005 4.005 8 N -0.381 5.381 9 C 0.294 3.706 10 O -0.443 6.443 11 C -0.152 4.152 12 C 0.038 3.962 13 H 0.050 0.950 14 C -0.502 4.502 15 H 0.052 0.948 16 C -0.174 4.174 17 N -0.597 5.597 18 Si 0.745 3.255 19 H -0.219 1.219 20 H -0.145 1.145 21 H -0.224 1.224 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.158 4.158 26 C -0.143 4.143 27 C -0.169 4.169 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.245 0.755 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.251 0.749 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.156 0.844 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.032 -16.901 -12.838 21.249 hybrid contribution -0.345 0.572 -0.194 0.695 sum 0.686 -16.329 -13.031 20.903 Atomic orbital electron populations 1.21846 0.94532 1.02140 1.01214 1.20496 0.96165 0.95657 0.93832 1.21858 1.01011 0.95919 1.01136 1.22152 0.97671 0.94684 0.84201 1.86439 1.77940 1.58278 1.17118 1.21685 1.01997 0.99913 0.90814 1.21363 0.98681 0.96039 0.84427 1.45896 1.54803 1.32699 1.04707 1.21110 0.79704 0.84099 0.85658 1.90728 1.39126 1.27309 1.87146 1.21593 1.02603 0.99479 0.91502 1.18003 0.96222 0.92582 0.89418 0.95044 1.20838 0.98830 0.91864 1.38672 0.94758 1.25620 1.01109 0.94801 0.95842 1.70032 1.39159 1.00856 1.49653 0.86179 0.81864 0.80320 0.77111 1.21939 1.14462 1.22383 1.20492 0.93967 0.94057 0.97904 1.21015 0.95801 0.98747 0.98069 1.21394 1.00450 0.97702 0.94821 1.21336 0.92565 1.01206 1.00649 1.21335 0.97389 0.99061 0.96494 1.21256 0.98708 0.99704 0.97274 0.93885 0.92598 0.91658 0.92224 0.92494 0.94110 0.92457 0.92016 0.75521 0.89634 0.88893 0.92930 0.94039 0.74936 0.88597 0.87515 0.93413 0.87317 0.84370 0.83615 0.84235 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.97 71.98 0.57 -2.25 16 2 C -0.06 -1.10 0.63 -52.18 -0.03 -1.13 16 3 C -0.14 -3.12 7.98 71.98 0.57 -2.55 16 4 C 0.09 1.19 5.91 71.98 0.43 1.62 16 5 O -0.59 -8.73 12.31 -148.98 -1.83 -10.57 16 6 C -0.11 -1.81 4.38 30.59 0.13 -1.68 16 7 C 0.12 3.22 4.97 86.38 0.43 3.65 16 8 N -0.73 -20.48 5.56 -463.06 -2.57 -23.06 16 9 C 0.51 20.12 7.58 87.66 0.66 20.78 16 10 O -0.57 -29.55 15.02 -3.04 -0.05 -29.60 16 11 C -0.11 -4.07 4.96 29.85 0.15 -3.92 16 12 C 0.06 2.63 1.17 -12.29 -0.01 2.61 16 13 H 0.03 1.55 4.94 -2.39 -0.01 1.54 16 14 C -0.46 -26.66 6.88 25.60 0.18 -26.48 16 15 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 16 C 0.02 1.37 5.47 84.65 0.46 1.84 16 17 N -0.96 -63.66 13.96 21.45 0.30 -63.37 16 18 Si 0.92 48.78 27.00 68.60 1.85 50.63 16 19 H -0.29 -16.14 7.11 99.48 0.71 -15.43 16 20 H -0.22 -10.43 4.72 99.48 0.47 -9.96 16 21 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 22 C -0.06 -2.59 4.65 -19.87 -0.09 -2.69 16 23 C -0.12 -4.44 8.93 22.27 0.20 -4.24 16 24 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 25 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 26 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 27 C -0.15 -5.55 8.70 22.27 0.19 -5.36 16 28 H 0.04 1.01 6.43 -2.39 -0.02 1.00 16 29 H 0.05 1.19 7.68 -2.38 -0.02 1.17 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.29 7.68 -2.39 -0.02 1.28 16 33 H 0.04 1.06 6.43 -2.39 -0.02 1.04 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.40 2.19 9.12 -74.06 -0.68 1.51 16 37 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.58 6.43 -2.39 -0.02 1.56 16 40 H 0.04 1.37 6.43 -2.39 -0.02 1.35 16 41 H 0.41 8.03 8.47 -92.70 -0.79 7.24 16 42 H 0.10 3.25 8.05 -2.38 -0.02 3.23 16 43 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 45 H 0.11 4.22 7.87 -2.91 -0.02 4.20 16 46 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 47 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 48 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 49 H 0.11 3.97 7.12 -2.91 -0.02 3.95 16 Total: -1.00 -83.03 387.30 1.46 -81.57 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.75 Total: 24.95 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.51 Total: -30.56 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.27 Total: -86.42 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.88 Total: -40.16 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.85 Total: 50.63 kcal Total: -83.03 1.46 -81.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452431396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.380 kcal (2) G-P(sol) polarization free energy of solvation -83.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds