Wall clock time and date at job start Tue Mar 31 2020 12:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35978 * 117.00182 * 2 1 4 4 C 1.38728 * 120.06706 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.90309 * 180.02562 * 4 3 2 6 6 C 1.39128 * 120.29159 * 359.97438 * 5 4 3 7 7 C 1.38287 * 119.80178 * 359.91342 * 6 5 4 8 8 C 1.38525 * 120.07206 * 179.97438 * 3 2 1 9 9 C 1.50783 * 121.46060 * 180.28204 * 7 6 5 10 10 C 1.53067 * 109.65242 * 342.21580 * 9 7 6 11 11 H 1.09003 * 109.69600 * 288.53570 * 10 9 7 12 12 N 1.46898 * 109.70021 * 167.93261 * 10 9 7 13 13 C 1.46899 * 110.99907 * 154.99526 * 12 10 9 14 14 C 1.53003 * 109.47475 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46721 * 300.00453 * 14 13 12 16 16 C 1.53000 * 109.46871 * 60.00134 * 14 13 12 17 17 C 1.52995 * 109.47417 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.47031 * 179.97438 * 17 14 13 19 19 H 1.08005 * 120.00107 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00041 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46965 * 89.99940 * 22 20 18 24 24 H 1.48500 * 109.47228 * 209.99759 * 22 20 18 25 25 H 1.48493 * 109.47427 * 329.99983 * 22 20 18 26 26 C 1.53407 * 108.29043 * 48.23017 * 10 9 7 27 27 O 1.35956 * 118.43561 * 179.81645 * 6 5 4 28 28 H 1.08992 * 109.47433 * 300.00189 * 1 2 3 29 29 H 1.09001 * 109.47018 * 60.00424 * 1 2 3 30 30 H 1.09005 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.04862 * 0.07766 * 4 3 2 32 32 H 1.07992 * 119.85740 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.86376 * 0.02562 * 8 3 2 34 34 H 1.09002 * 109.43630 * 222.16912 * 9 7 6 35 35 H 1.08996 * 109.43386 * 102.26033 * 9 7 6 36 36 H 1.00907 * 110.99914 * 31.04782 * 12 10 9 37 37 H 1.08993 * 109.47506 * 300.00357 * 13 12 10 38 38 H 1.09007 * 109.46742 * 60.00392 * 13 12 10 39 39 H 1.09006 * 109.47161 * 59.99922 * 15 14 13 40 40 H 1.09004 * 109.46881 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.47123 * 299.99557 * 15 14 13 42 42 H 1.08993 * 109.46943 * 60.00442 * 16 14 13 43 43 H 1.09004 * 109.47139 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.46939 * 300.00121 * 16 14 13 45 45 H 1.08993 * 109.47254 * 300.00082 * 17 14 13 46 46 H 1.09007 * 109.47052 * 60.00152 * 17 14 13 47 47 H 0.97003 * 119.99367 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.68448 * 54.96058 * 26 10 9 49 49 H 1.09008 * 109.68705 * 175.51644 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9220 3.6032 -0.0011 6 6 3.3112 3.6791 -0.0005 7 6 4.0629 2.5183 0.0024 8 6 3.4296 1.2857 0.0005 9 6 5.5702 2.5569 0.0094 10 6 6.0517 3.9425 -0.4280 11 1 5.8695 4.0750 -1.4945 12 7 7.4876 4.0785 -0.1495 13 6 8.1045 5.0724 -1.0381 14 6 9.5966 5.1854 -0.7192 15 6 9.7753 5.6220 0.7363 16 6 10.2675 3.8266 -0.9302 17 6 10.2389 6.2210 -1.6443 18 6 11.7084 6.3327 -1.3297 19 1 12.1411 5.7255 -0.5483 20 6 12.5008 7.2094 -2.0401 21 7 13.7834 7.3065 -1.7658 22 14 11.7526 8.2591 -3.3919 23 1 11.2785 9.5433 -2.8163 24 1 12.7773 8.5312 -4.4318 25 1 10.6073 7.5375 -4.0024 26 6 5.2690 4.9968 0.3652 27 8 3.8924 4.9081 -0.0049 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2135 2.3216 0.0003 32 1 1.3342 4.5091 -0.0019 33 1 4.0168 0.3793 0.0005 34 1 5.9555 1.8050 -0.6793 35 1 5.9337 2.3475 1.0154 36 1 7.9561 3.1878 -0.2228 37 1 7.9775 4.7612 -2.0749 38 1 7.6261 6.0403 -0.8881 39 1 9.3176 4.8844 1.3957 40 1 10.8384 5.7021 0.9637 41 1 9.2973 6.5900 0.8866 42 1 10.1402 3.5157 -1.9670 43 1 11.3305 3.9070 -0.7025 44 1 9.8098 3.0891 -0.2707 45 1 10.1115 5.9104 -2.6813 46 1 9.7608 7.1889 -1.4936 47 1 14.3409 7.9230 -2.2658 48 1 5.3750 4.8062 1.4332 49 1 5.6493 5.9908 0.1296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453212077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:22 Heat of formation + Delta-G solvation = -62.245348 kcal Electronic energy + Delta-G solvation = -26763.967379 eV Core-core repulsion = 23077.037019 eV Total energy + Delta-G solvation = -3686.930359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05034 -39.56928 -37.87590 -36.60842 -35.37896 -32.79150 -31.95057 -30.24287 -29.41462 -27.64415 -27.34078 -26.45513 -25.95556 -25.12631 -23.02717 -22.71664 -21.67300 -20.12297 -18.23181 -17.91844 -17.80485 -17.02841 -16.76488 -16.07966 -15.71932 -15.52639 -15.01091 -14.63580 -14.49914 -14.15020 -14.01546 -13.85214 -13.50805 -13.37231 -13.27269 -13.06767 -12.85140 -12.68911 -12.34529 -12.21562 -12.06794 -11.87178 -11.42845 -11.17030 -11.03548 -10.97649 -10.88784 -10.68105 -10.55532 -10.51412 -10.33615 -9.81910 -9.70457 -9.33058 -9.12345 -8.92334 -8.50698 -8.36729 -7.93529 -6.00928 -3.97240 0.94806 1.20868 2.93115 3.18695 3.31691 3.39525 3.42609 3.44546 4.09765 4.42083 4.45233 4.47455 4.52019 4.69941 4.72091 4.77512 4.85026 5.02023 5.08491 5.10284 5.31866 5.36831 5.39523 5.47350 5.51360 5.58705 5.61410 5.66775 5.74765 5.80404 5.87383 6.03285 6.09580 6.16631 6.17579 6.28725 6.36706 6.55163 6.64788 6.76434 6.97909 7.04219 7.08115 7.13466 7.20869 7.29863 7.36110 7.40405 7.50842 7.83960 8.58380 9.04769 9.62099 11.12074 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.002255 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.075935 B =12412.056819 C =12734.886456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.092 3.908 4 C -0.175 4.175 5 C -0.111 4.111 6 C 0.101 3.899 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.082 4.082 10 C 0.051 3.949 11 H 0.057 0.943 12 N -0.675 5.675 13 C 0.065 3.935 14 C -0.049 4.049 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.005 4.005 18 C -0.507 4.507 19 H 0.078 0.922 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.876 3.124 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.267 1.267 26 C 0.073 3.927 27 O -0.317 6.317 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.346 0.654 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.012 0.988 46 H 0.010 0.990 47 H 0.261 0.739 48 H 0.071 0.929 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.576 -12.669 4.434 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.048 3.952 4 C -0.194 4.194 5 C -0.129 4.129 6 C 0.056 3.944 7 C -0.115 4.115 8 C -0.135 4.135 9 C -0.119 4.119 10 C -0.060 4.060 11 H 0.075 0.925 12 N -0.309 5.309 13 C -0.063 4.063 14 C -0.049 4.049 15 C -0.176 4.176 16 C -0.189 4.189 17 C -0.042 4.042 18 C -0.545 4.545 19 H 0.096 0.904 20 C -0.137 4.137 21 N -0.544 5.544 22 Si 0.704 3.296 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.192 1.192 26 C -0.003 4.003 27 O -0.230 6.230 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.167 0.833 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.089 0.911 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.507 -12.139 4.844 29.554 hybrid contribution -0.342 0.222 -1.658 1.707 sum -26.848 -11.917 3.186 29.547 Atomic orbital electron populations 1.23028 0.78583 1.03839 1.01255 1.86070 1.21166 1.26739 1.89356 1.18782 0.92143 0.84206 1.00094 1.20997 0.99947 0.91490 1.06984 1.20366 0.91605 0.97992 1.02969 1.18612 0.91814 0.84229 0.99767 1.19597 0.95693 0.91878 1.04329 1.20128 0.91352 0.97503 1.04547 1.20710 0.90269 0.97365 1.03546 1.22095 0.90505 0.94750 0.98618 0.92514 1.60505 1.00235 1.13675 1.56484 1.22247 0.96206 0.95008 0.92856 1.20426 0.90736 0.96543 0.97200 1.21630 1.01833 0.99394 0.94738 1.21787 1.02255 0.95412 0.99411 1.19629 0.96906 0.93414 0.94282 1.21126 0.91146 1.22775 1.19474 0.90410 1.25025 0.94740 0.96877 0.97012 1.69911 1.05025 1.37805 1.41695 0.86845 0.79168 0.81171 0.82449 1.20428 1.21579 1.19208 1.22996 0.77312 1.00829 0.99140 1.86033 1.26897 1.25898 1.84184 0.92745 0.92744 0.88336 0.84988 0.84902 0.84929 0.89863 0.88963 0.83313 0.95525 0.91431 0.93644 0.92050 0.94176 0.94097 0.91059 0.94561 0.96937 0.97128 0.92885 0.91068 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.02 10.50 -19.67 -0.21 -3.23 16 3 C 0.09 0.94 6.68 -39.29 -0.26 0.68 16 4 C -0.18 -1.60 9.03 -39.51 -0.36 -1.96 16 5 C -0.11 -1.13 9.93 -39.36 -0.39 -1.52 16 6 C 0.10 1.19 6.47 -39.23 -0.25 0.94 16 7 C -0.11 -1.25 5.75 -104.44 -0.60 -1.85 16 8 C -0.12 -1.22 9.61 -39.35 -0.38 -1.60 16 9 C -0.08 -0.82 5.14 -27.81 -0.14 -0.96 16 10 C 0.05 0.59 2.71 -67.47 -0.18 0.40 16 11 H 0.06 0.72 7.81 -51.93 -0.41 0.31 16 12 N -0.67 -8.56 5.53 -106.47 -0.59 -9.15 16 13 C 0.07 1.01 4.46 -3.82 -0.02 0.99 16 14 C -0.05 -0.90 0.60 -154.51 -0.09 -0.99 16 15 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 16 C -0.13 -2.31 7.89 37.16 0.29 -2.02 16 17 C 0.00 -0.10 3.11 -27.89 -0.09 -0.19 16 18 C -0.51 -13.81 8.20 -34.44 -0.28 -14.09 16 19 H 0.08 2.26 5.92 -52.48 -0.31 1.95 16 20 C 0.06 1.83 5.47 -17.82 -0.10 1.74 16 21 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 22 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 26 C 0.07 0.85 6.57 37.37 0.25 1.09 16 27 O -0.32 -3.99 10.27 -19.60 -0.20 -4.19 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 0.86 6.31 -52.48 -0.33 0.53 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.35 4.16 6.41 -39.29 -0.25 3.91 16 37 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 38 H 0.07 1.05 7.49 -51.93 -0.39 0.66 16 39 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 40 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.44 6.62 -51.93 -0.34 1.09 16 44 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 46 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.11 1.27 7.49 -51.92 -0.39 0.88 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -30.74 378.26 -8.54 -39.28 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.03 Total: 1.45 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -1.32 Total: -20.07 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.18 Total: -35.94 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.41 Total: -7.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.74 -8.54 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453212077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.965 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds