Wall clock time and date at job start Tue Mar 31 2020 12:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35978 * 117.00182 * 2 1 4 4 C 1.38728 * 120.06706 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.90309 * 180.02562 * 4 3 2 6 6 C 1.39128 * 120.29159 * 359.97438 * 5 4 3 7 7 C 1.38287 * 119.80178 * 359.91342 * 6 5 4 8 8 C 1.38525 * 120.07206 * 179.97438 * 3 2 1 9 9 C 1.50783 * 121.46060 * 180.28204 * 7 6 5 10 10 C 1.53067 * 109.65242 * 342.21580 * 9 7 6 11 11 H 1.09003 * 109.69600 * 288.53570 * 10 9 7 12 12 N 1.46898 * 109.70021 * 167.93261 * 10 9 7 13 13 C 1.46899 * 110.99907 * 154.99526 * 12 10 9 14 14 C 1.53003 * 109.47475 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46721 * 300.00453 * 14 13 12 16 16 C 1.53000 * 109.46871 * 60.00134 * 14 13 12 17 17 C 1.52995 * 109.47417 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.47031 * 179.97438 * 17 14 13 19 19 H 1.08005 * 120.00107 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00041 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99688 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 119.99875 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46965 * 89.99940 * 22 20 18 24 24 H 1.48500 * 109.47228 * 209.99759 * 22 20 18 25 25 H 1.48493 * 109.47427 * 329.99983 * 22 20 18 26 26 C 1.53407 * 108.29043 * 48.23017 * 10 9 7 27 27 O 1.35956 * 118.43561 * 179.81645 * 6 5 4 28 28 H 1.08992 * 109.47433 * 300.00189 * 1 2 3 29 29 H 1.09001 * 109.47018 * 60.00424 * 1 2 3 30 30 H 1.09005 * 109.46916 * 180.02562 * 1 2 3 31 31 H 1.08008 * 120.04862 * 0.07766 * 4 3 2 32 32 H 1.07992 * 119.85740 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.86376 * 0.02562 * 8 3 2 34 34 H 1.09002 * 109.43630 * 222.16912 * 9 7 6 35 35 H 1.08996 * 109.43386 * 102.26033 * 9 7 6 36 36 H 1.00907 * 110.99914 * 31.04782 * 12 10 9 37 37 H 1.08993 * 109.47506 * 300.00357 * 13 12 10 38 38 H 1.09007 * 109.46742 * 60.00392 * 13 12 10 39 39 H 1.09006 * 109.47161 * 59.99922 * 15 14 13 40 40 H 1.09004 * 109.46881 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.47123 * 299.99557 * 15 14 13 42 42 H 1.08993 * 109.46943 * 60.00442 * 16 14 13 43 43 H 1.09004 * 109.47139 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.46939 * 300.00121 * 16 14 13 45 45 H 1.08993 * 109.47254 * 300.00082 * 17 14 13 46 46 H 1.09007 * 109.47052 * 60.00152 * 17 14 13 47 47 H 0.97003 * 119.99367 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.68448 * 54.96058 * 26 10 9 49 49 H 1.09008 * 109.68705 * 175.51644 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2922 2.3759 -0.0005 5 6 1.9220 3.6032 -0.0011 6 6 3.3112 3.6791 -0.0005 7 6 4.0629 2.5183 0.0024 8 6 3.4296 1.2857 0.0005 9 6 5.5702 2.5569 0.0094 10 6 6.0517 3.9425 -0.4280 11 1 5.8695 4.0750 -1.4945 12 7 7.4876 4.0785 -0.1495 13 6 8.1045 5.0724 -1.0381 14 6 9.5966 5.1854 -0.7192 15 6 9.7753 5.6220 0.7363 16 6 10.2675 3.8266 -0.9302 17 6 10.2389 6.2210 -1.6443 18 6 11.7084 6.3327 -1.3297 19 1 12.1411 5.7255 -0.5483 20 6 12.5008 7.2094 -2.0401 21 7 13.7834 7.3065 -1.7658 22 14 11.7526 8.2591 -3.3919 23 1 11.2785 9.5433 -2.8163 24 1 12.7773 8.5312 -4.4318 25 1 10.6073 7.5375 -4.0024 26 6 5.2690 4.9968 0.3652 27 8 3.8924 4.9081 -0.0049 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2135 2.3216 0.0003 32 1 1.3342 4.5091 -0.0019 33 1 4.0168 0.3793 0.0005 34 1 5.9555 1.8050 -0.6793 35 1 5.9337 2.3475 1.0154 36 1 7.9561 3.1878 -0.2228 37 1 7.9775 4.7612 -2.0749 38 1 7.6261 6.0403 -0.8881 39 1 9.3176 4.8844 1.3957 40 1 10.8384 5.7021 0.9637 41 1 9.2973 6.5900 0.8866 42 1 10.1402 3.5157 -1.9670 43 1 11.3305 3.9070 -0.7025 44 1 9.8098 3.0891 -0.2707 45 1 10.1115 5.9104 -2.6813 46 1 9.7608 7.1889 -1.4936 47 1 14.3409 7.9230 -2.2658 48 1 5.3750 4.8062 1.4332 49 1 5.6493 5.9908 0.1296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453212077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:21 Heat of formation + Delta-G solvation = -80.975529 kcal Electronic energy + Delta-G solvation = -26764.779580 eV Core-core repulsion = 23077.037019 eV Total energy + Delta-G solvation = -3687.742561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83818 -40.30443 -39.18928 -37.37877 -36.54189 -34.51957 -33.22076 -30.96681 -30.51995 -29.28887 -27.98593 -27.90259 -26.87868 -26.36667 -24.21745 -23.71637 -22.92164 -20.94749 -19.50482 -18.88052 -18.83230 -18.59373 -17.84416 -16.79032 -16.57042 -16.48414 -16.17941 -15.79650 -15.58035 -15.38977 -15.36689 -15.02256 -14.55766 -14.30986 -14.23632 -14.08656 -14.05530 -13.84517 -13.71118 -13.52055 -12.92066 -12.80056 -12.73930 -12.65574 -12.49106 -12.23174 -12.16927 -12.00112 -11.87192 -11.71359 -11.48538 -11.35172 -11.24784 -10.97538 -10.80038 -10.69547 -9.86321 -9.42551 -8.70980 -8.21307 -6.21252 0.21220 0.43449 1.35861 1.37422 1.48063 2.26182 2.39471 2.45315 2.68113 3.11471 3.13740 3.60500 3.65621 3.80719 3.93344 4.02984 4.12075 4.17238 4.21236 4.30817 4.34514 4.42368 4.43267 4.58142 4.61733 4.64215 4.73659 4.74994 4.77153 4.87949 4.90811 4.92955 4.98259 5.03393 5.05777 5.11461 5.20967 5.30909 5.38153 5.39534 5.47217 5.52904 5.55653 5.63468 5.77324 5.82927 5.98766 6.35624 6.41275 6.45699 6.56033 6.86266 7.41061 8.94743 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.002255 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.075935 B =12412.056819 C =12734.886456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.087 3.913 4 C -0.172 4.172 5 C -0.117 4.117 6 C 0.074 3.926 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.076 4.076 10 C 0.058 3.942 11 H 0.048 0.952 12 N -0.669 5.669 13 C 0.078 3.922 14 C -0.048 4.048 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.004 4.004 18 C -0.502 4.502 19 H 0.046 0.954 20 C -0.001 4.001 21 N -0.954 5.954 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.250 1.250 26 C 0.073 3.927 27 O -0.329 6.329 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.353 0.647 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.027 0.973 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.012 0.988 46 H 0.012 0.988 47 H 0.262 0.738 48 H 0.073 0.927 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.705 -13.617 4.068 32.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.042 3.958 4 C -0.191 4.191 5 C -0.135 4.135 6 C 0.030 3.970 7 C -0.121 4.121 8 C -0.147 4.147 9 C -0.113 4.113 10 C -0.053 4.053 11 H 0.066 0.934 12 N -0.304 5.304 13 C -0.051 4.051 14 C -0.048 4.048 15 C -0.168 4.168 16 C -0.183 4.183 17 C -0.042 4.042 18 C -0.540 4.540 19 H 0.064 0.936 20 C -0.196 4.196 21 N -0.596 5.596 22 Si 0.765 3.235 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.174 1.174 26 C -0.003 4.003 27 O -0.243 6.243 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.176 0.824 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.174 0.826 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.030 0.970 46 H 0.030 0.970 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -29.667 -13.107 4.485 32.742 hybrid contribution 0.559 0.405 -1.463 1.618 sum -29.108 -12.702 3.022 31.902 Atomic orbital electron populations 1.23331 0.76564 1.05512 1.02241 1.86054 1.23330 1.26464 1.89192 1.18972 0.92354 0.84889 0.99601 1.21268 1.01274 0.90681 1.05846 1.20619 0.91308 0.98998 1.02592 1.18898 0.92620 0.84173 1.01330 1.19684 0.96072 0.91891 1.04454 1.20300 0.91945 0.97647 1.04826 1.20678 0.89869 0.96578 1.04191 1.22016 0.89406 0.95754 0.98096 0.93414 1.60410 1.00916 1.13512 1.55528 1.21966 0.93722 0.96045 0.93365 1.20346 0.92858 0.95555 0.96057 1.21536 0.99731 1.00210 0.95289 1.21712 1.00233 0.95944 1.00439 1.19608 0.94321 0.95015 0.95268 1.21431 0.93453 1.21234 1.17857 0.93620 1.25928 0.95122 0.98711 0.99879 1.70066 1.06686 1.39306 1.43523 0.85809 0.78724 0.79589 0.79396 1.19656 1.21554 1.17364 1.22984 0.77278 1.00772 0.99265 1.86006 1.27129 1.26616 1.84594 0.91664 0.91764 0.86500 0.82394 0.83749 0.84065 0.88679 0.88286 0.82596 0.95398 0.91329 0.91187 0.95394 0.94229 0.93763 0.94498 0.91183 0.96991 0.97017 0.92946 0.90836 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.68 10.50 -93.30 -0.98 -6.66 16 3 C 0.09 1.61 6.68 22.46 0.15 1.76 16 4 C -0.17 -2.77 9.03 22.32 0.20 -2.57 16 5 C -0.12 -2.20 9.93 22.41 0.22 -1.98 16 6 C 0.07 1.66 6.47 22.50 0.15 1.81 16 7 C -0.12 -2.45 5.75 -19.75 -0.11 -2.56 16 8 C -0.13 -2.48 9.61 22.42 0.22 -2.27 16 9 C -0.08 -1.37 5.14 29.90 0.15 -1.21 16 10 C 0.06 1.21 2.71 45.07 0.12 1.34 16 11 H 0.05 1.12 7.81 -2.39 -0.02 1.10 16 12 N -0.67 -15.29 5.53 -490.75 -2.72 -18.01 16 13 C 0.08 2.24 4.46 86.30 0.38 2.62 16 14 C -0.05 -1.71 0.60 -52.18 -0.03 -1.74 16 15 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 16 C -0.13 -4.32 7.89 71.98 0.57 -3.75 16 17 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 18 C -0.50 -27.93 8.20 25.60 0.21 -27.72 16 19 H 0.05 2.78 5.92 -2.91 -0.02 2.77 16 20 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 21 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 22 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 26 C 0.07 1.59 6.57 72.12 0.47 2.06 16 27 O -0.33 -7.96 10.27 -93.05 -0.96 -8.91 16 28 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 29 H 0.06 0.40 7.66 -2.39 -0.02 0.39 16 30 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.16 1.58 6.31 -2.91 -0.02 1.56 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.35 7.38 6.41 -89.69 -0.57 6.80 16 37 H 0.03 0.80 8.06 -2.39 -0.02 0.78 16 38 H 0.07 1.98 7.49 -2.38 -0.02 1.96 16 39 H 0.07 2.15 7.60 -2.38 -0.02 2.14 16 40 H 0.03 1.17 6.62 -2.39 -0.02 1.15 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.50 6.62 -2.39 -0.02 1.49 16 44 H 0.07 1.90 6.57 -2.38 -0.02 1.88 16 45 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 46 H 0.01 0.52 7.57 -2.38 -0.02 0.51 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.11 2.34 7.49 -2.38 -0.02 2.33 16 Total: -1.00 -67.62 378.26 2.79 -64.83 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.31 Total: 17.76 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 4.95 Total: -36.03 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -2.42 Total: -77.62 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.94 Total: -15.57 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Total: -67.62 2.79 -64.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453212077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.146 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds