Wall clock time and date at job start Tue Mar 31 2020 12:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 119.99669 * 2 1 4 4 O 1.21552 * 119.99727 * 185.81684 * 3 2 1 5 5 C 1.47887 * 120.00487 * 5.81754 * 3 2 1 6 6 C 1.39917 * 120.02734 * 213.84136 * 5 3 2 7 7 C 1.38325 * 120.35833 * 179.71553 * 6 5 3 8 8 C 1.37749 * 120.41271 * 0.55955 * 7 6 5 9 9 C 1.40757 * 120.03766 * 359.71823 * 8 7 6 10 10 C 1.41436 * 120.17385 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99577 * 211.11548 * 10 9 8 12 12 C 1.39937 * 120.00564 * 31.11774 * 10 9 8 13 13 N 1.30826 * 119.99666 * 8.17900 * 12 10 9 14 14 Si 1.86791 * 120.00231 * 188.17754 * 12 10 9 15 15 H 1.48498 * 109.47432 * 60.00166 * 14 12 10 16 16 H 1.48506 * 109.47241 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47312 * 300.00010 * 14 12 10 18 18 C 1.39000 * 120.02228 * 34.11292 * 5 3 2 19 19 C 1.46495 * 120.00069 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47072 * 186.26799 * 19 2 1 21 21 C 1.53002 * 109.47160 * 66.26988 * 19 2 1 22 22 O 1.42902 * 109.46924 * 295.94382 * 21 19 2 23 23 C 1.53002 * 109.47346 * 306.26909 * 19 2 1 24 24 C 1.53004 * 109.47071 * 293.17473 * 23 19 2 25 25 C 1.52996 * 109.47293 * 66.20911 * 24 23 19 26 26 C 1.52995 * 109.47165 * 186.21086 * 24 23 19 27 27 C 1.53001 * 109.46908 * 306.20898 * 24 23 19 28 28 H 1.08995 * 109.47709 * 272.46917 * 1 2 3 29 29 H 1.09001 * 109.47305 * 32.47086 * 1 2 3 30 30 H 1.09002 * 109.46957 * 152.46548 * 1 2 3 31 31 H 1.08002 * 119.81676 * 359.97084 * 6 5 3 32 32 H 1.08007 * 119.79355 * 180.25370 * 7 6 5 33 33 H 1.07995 * 119.98183 * 179.74721 * 8 7 6 34 34 H 0.97002 * 120.00052 * 179.97438 * 13 12 10 35 35 H 1.07996 * 120.19971 * 359.97438 * 18 5 3 36 36 H 1.08997 * 109.47093 * 175.94478 * 21 19 2 37 37 H 1.09001 * 109.47168 * 55.93584 * 21 19 2 38 38 H 0.96700 * 114.00171 * 179.97438 * 22 21 19 39 39 H 1.09010 * 109.46895 * 53.16740 * 23 19 2 40 40 H 1.08998 * 109.47421 * 173.16705 * 23 19 2 41 41 H 1.09002 * 109.47264 * 52.53083 * 25 24 23 42 42 H 1.08996 * 109.47451 * 172.53658 * 25 24 23 43 43 H 1.09001 * 109.47414 * 292.53623 * 25 24 23 44 44 H 1.09001 * 109.46994 * 59.99421 * 26 24 23 45 45 H 1.09000 * 109.47625 * 179.97438 * 26 24 23 46 46 H 1.09000 * 109.47067 * 299.99943 * 26 24 23 47 47 H 1.09006 * 109.47026 * 60.00052 * 27 24 23 48 48 H 1.08997 * 109.47419 * 180.02562 * 27 24 23 49 49 H 1.09001 * 109.46974 * 300.00409 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3496 1.1700 -0.1067 5 6 1.4051 2.4447 0.1298 6 6 1.8677 3.5880 -0.5309 7 6 1.1835 4.7850 -0.4190 8 6 0.0458 4.8684 0.3531 9 6 -0.4315 3.7301 1.0298 10 6 -1.5997 3.8123 1.8228 11 1 -1.7060 3.1833 2.6944 12 6 -2.6178 4.7085 1.4784 13 7 -2.5646 5.3531 0.3412 14 14 -4.0526 4.9843 2.6421 15 1 -3.5457 5.4988 3.9397 16 1 -4.9877 5.9739 2.0492 17 1 -4.7647 3.7002 2.8630 18 6 0.2586 2.5118 0.9128 19 6 2.1975 -1.2687 0.0006 20 1 3.2638 -1.0725 0.1127 21 6 1.9498 -2.0012 -1.3197 22 8 0.5658 -2.3419 -1.4229 23 6 1.7135 -2.1366 1.1640 24 6 2.1136 -1.4833 2.4884 25 6 1.3540 -0.1660 2.6573 26 6 1.7683 -2.4230 3.6454 27 6 3.6186 -1.2077 2.4870 28 1 -0.3634 0.0443 1.0266 29 1 -0.3634 0.8670 -0.5517 30 1 -0.3633 -0.9113 -0.4751 31 1 2.7615 3.5347 -1.1348 32 1 1.5464 5.6610 -0.9362 33 1 -0.4807 5.8074 0.4389 34 1 -3.2704 5.9741 0.1022 35 1 -0.0997 1.6327 1.4278 36 1 2.5509 -2.9100 -1.3493 37 1 2.2277 -1.3543 -2.1518 38 1 0.3355 -2.8095 -2.2374 39 1 0.6285 -2.2321 1.1191 40 1 2.1685 -3.1246 1.0940 41 1 0.2865 -0.3426 2.5259 42 1 1.5362 0.2332 3.6550 43 1 1.6982 0.5502 1.9111 44 1 2.3093 -3.3615 3.5250 45 1 2.0536 -1.9579 4.5889 46 1 0.6961 -2.6193 3.6463 47 1 3.8646 -0.5382 1.6627 48 1 3.9037 -0.7428 3.4307 49 1 4.1596 -2.1463 2.3667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456418838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:12 Heat of formation + Delta-G solvation = -61.089577 kcal Electronic energy + Delta-G solvation = -28911.264372 eV Core-core repulsion = 25224.384131 eV Total energy + Delta-G solvation = -3686.880241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43252 -37.96514 -36.83903 -36.58806 -34.48840 -33.60847 -31.42420 -29.88239 -29.05594 -27.27847 -27.05179 -26.31000 -25.81951 -25.24353 -22.97393 -20.91618 -20.62541 -19.24717 -18.36146 -17.68254 -17.08308 -16.06819 -15.76888 -15.65401 -15.24465 -14.77920 -14.50014 -14.25369 -13.98479 -13.91294 -13.40440 -13.24196 -13.08040 -12.81967 -12.69135 -12.38063 -12.04472 -12.02682 -11.69362 -11.64287 -11.56964 -11.43711 -11.29256 -11.18822 -11.05681 -10.94030 -10.65475 -10.49029 -10.42062 -10.34331 -10.19221 -10.17204 -9.95865 -9.48474 -9.25107 -8.98218 -8.02427 -7.56561 -7.41872 -6.72210 -4.43519 2.28721 2.76796 3.06183 3.08914 3.14787 3.45979 3.70518 3.93646 4.25603 4.64457 4.66950 4.91635 4.99658 5.21058 5.25714 5.32855 5.41409 5.56768 5.60971 5.63824 5.74200 5.78393 5.81221 5.90241 5.93612 5.97855 6.03564 6.12756 6.23167 6.27187 6.28688 6.32614 6.41901 6.47531 6.56896 6.64081 6.77455 6.82559 6.94148 6.96578 7.07793 7.21856 7.39899 7.55441 7.66411 7.84358 7.94985 8.00466 8.13754 8.53957 8.79451 8.83770 8.87027 10.22791 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013683 B = 0.004301 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.772155 B = 6508.109897 C = 7096.656661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.568 3.432 4 O -0.560 6.560 5 C -0.121 4.121 6 C -0.173 4.173 7 C -0.120 4.120 8 C -0.129 4.129 9 C 0.099 3.901 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.808 5.808 14 Si 0.910 3.090 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.183 4.183 19 C 0.139 3.861 20 H 0.113 0.887 21 C 0.067 3.933 22 O -0.561 6.561 23 C -0.111 4.111 24 C -0.066 4.066 25 C -0.158 4.158 26 C -0.138 4.138 27 C -0.150 4.150 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.280 0.720 35 H 0.113 0.887 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.372 0.628 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -13.558 -0.269 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C 0.361 3.639 4 O -0.440 6.440 5 C -0.124 4.124 6 C -0.193 4.193 7 C -0.138 4.138 8 C -0.149 4.149 9 C 0.097 3.903 10 C -0.496 4.496 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.435 5.435 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.203 4.203 19 C 0.035 3.965 20 H 0.130 0.870 21 C -0.012 4.012 22 O -0.367 6.367 23 C -0.149 4.149 24 C -0.066 4.066 25 C -0.215 4.215 26 C -0.195 4.195 27 C -0.207 4.207 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.219 0.781 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.327 -13.095 0.115 13.792 hybrid contribution -0.771 -0.068 -0.140 0.786 sum 3.556 -13.163 -0.025 13.635 Atomic orbital electron populations 1.22468 0.78796 1.04236 1.02219 1.47745 1.07436 1.04445 1.73459 1.18891 0.86849 0.84108 0.74062 1.90645 1.14465 1.87622 1.51273 1.19290 0.97602 0.91921 1.03591 1.20422 1.00966 0.92613 1.05329 1.20684 0.96731 0.96059 1.00334 1.21592 0.94727 0.99304 0.99263 1.17559 0.91692 0.89899 0.91189 1.19453 1.00439 1.19161 1.10573 0.90574 1.25827 0.99535 0.93906 0.94876 1.69747 1.32695 1.21502 1.19556 0.86331 0.80260 0.78944 0.80937 1.18995 1.20426 1.19076 1.21677 0.96891 0.97992 1.03766 1.21268 0.98606 0.83661 0.92976 0.86976 1.22657 0.82613 0.97742 0.98187 1.86511 1.25369 1.79668 1.45159 1.21897 1.02391 0.97559 0.93025 1.20502 0.95694 0.95954 0.94493 1.22438 0.99929 0.96973 1.02173 1.21859 1.01133 0.98679 0.97853 1.22025 0.94930 1.01238 1.02530 0.92279 0.90451 0.89292 0.88584 0.88739 0.85979 0.90931 0.86950 0.93176 0.93353 0.78128 0.90518 0.91609 0.92378 0.93635 0.90282 0.93194 0.92884 0.92822 0.91236 0.93011 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 7.04 59.85 0.42 1.47 16 2 N -0.60 -9.93 1.34 -175.03 -0.23 -10.17 16 3 C 0.57 11.59 5.27 -12.31 -0.06 11.52 16 4 O -0.56 -12.45 15.38 5.32 0.08 -12.36 16 5 C -0.12 -2.72 5.15 -105.04 -0.54 -3.26 16 6 C -0.17 -3.98 9.61 -38.92 -0.37 -4.36 16 7 C -0.12 -2.76 10.01 -39.73 -0.40 -3.16 16 8 C -0.13 -3.24 8.64 -38.81 -0.34 -3.57 16 9 C 0.10 2.50 5.53 -106.87 -0.59 1.91 16 10 C -0.47 -11.76 9.05 -37.73 -0.34 -12.10 16 11 H 0.08 1.85 7.86 -52.48 -0.41 1.43 16 12 C 0.07 1.80 5.28 -17.34 -0.09 1.71 16 13 N -0.81 -20.26 10.86 55.55 0.60 -19.66 16 14 Si 0.91 18.28 29.57 -169.99 -5.03 13.25 16 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 16 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 18 C -0.18 -4.19 7.00 -38.44 -0.27 -4.46 16 19 C 0.14 1.92 2.18 -67.93 -0.15 1.77 16 20 H 0.11 1.69 4.81 -51.93 -0.25 1.44 16 21 C 0.07 0.76 6.84 37.16 0.25 1.01 16 22 O -0.56 -5.97 10.02 -35.23 -0.35 -6.32 16 23 C -0.11 -1.35 3.52 -26.73 -0.09 -1.45 16 24 C -0.07 -0.86 0.80 -154.51 -0.12 -0.99 16 25 C -0.16 -2.46 6.13 37.16 0.23 -2.23 16 26 C -0.14 -1.54 8.47 37.16 0.31 -1.23 16 27 C -0.15 -2.00 7.96 37.16 0.30 -1.70 16 28 H 0.06 0.96 3.89 -51.93 -0.20 0.76 16 29 H 0.08 1.43 6.29 -51.93 -0.33 1.11 16 30 H 0.09 1.30 5.00 -51.93 -0.26 1.04 16 31 H 0.10 2.12 7.97 -52.49 -0.42 1.70 16 32 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.12 3.16 6.30 -52.49 -0.33 2.83 16 34 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 35 H 0.11 2.37 3.99 -52.49 -0.21 2.17 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.37 2.38 9.12 45.56 0.42 2.79 16 39 H 0.08 0.99 6.83 -51.92 -0.35 0.63 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.89 5.98 -51.93 -0.31 0.58 16 42 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 43 H 0.08 1.42 2.87 -51.93 -0.15 1.27 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 1.09 5.38 -51.93 -0.28 0.81 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -28.25 362.87 -7.77 -36.01 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -6.45 Total: 12.89 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -1.86 Total: -19.12 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.37 Total: -29.82 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.27 Total: -18.69 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.25 -7.77 -36.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456418838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.075 kcal (2) G-P(sol) polarization free energy of solvation -28.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds