Wall clock time and date at job start Tue Mar 31 2020 12:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00015 * 2 1 4 4 O 1.21542 * 120.00345 * 343.24763 * 3 2 1 5 5 C 1.47889 * 119.99871 * 163.51686 * 3 2 1 6 6 C 1.39919 * 120.02379 * 338.15586 * 5 3 2 7 7 C 1.38331 * 120.35691 * 179.71742 * 6 5 3 8 8 C 1.37751 * 120.41308 * 0.54903 * 7 6 5 9 9 C 1.40747 * 120.03750 * 359.72752 * 8 7 6 10 10 C 1.41443 * 120.17624 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00245 * 327.71182 * 10 9 8 12 12 C 1.39938 * 119.99742 * 147.71654 * 10 9 8 13 13 N 1.30833 * 119.99984 * 0.39993 * 12 10 9 14 14 Si 1.86793 * 119.99959 * 180.40548 * 12 10 9 15 15 H 1.48497 * 109.47345 * 59.99683 * 14 12 10 16 16 H 1.48504 * 109.47141 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46952 * 299.99436 * 14 12 10 18 18 C 1.38996 * 120.02832 * 158.42149 * 5 3 2 19 19 C 1.46502 * 119.99842 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47151 * 173.30367 * 19 2 1 21 21 C 1.52998 * 109.46574 * 293.29941 * 19 2 1 22 22 O 1.42892 * 109.47330 * 62.47160 * 21 19 2 23 23 C 1.52997 * 109.47265 * 53.29819 * 19 2 1 24 24 C 1.52995 * 109.47202 * 75.69907 * 23 19 2 25 25 C 1.53007 * 109.47388 * 39.69772 * 24 23 19 26 26 C 1.52996 * 109.47350 * 159.69877 * 24 23 19 27 27 C 1.53000 * 109.47006 * 279.70217 * 24 23 19 28 28 H 1.09009 * 109.47190 * 102.74259 * 1 2 3 29 29 H 1.08995 * 109.47353 * 222.74614 * 1 2 3 30 30 H 1.08998 * 109.47052 * 342.74910 * 1 2 3 31 31 H 1.07999 * 119.82276 * 359.97099 * 6 5 3 32 32 H 1.08004 * 119.78983 * 180.25801 * 7 6 5 33 33 H 1.07996 * 119.98372 * 179.74328 * 8 7 6 34 34 H 0.97005 * 119.99994 * 180.02562 * 13 12 10 35 35 H 1.08006 * 120.19798 * 359.97438 * 18 5 3 36 36 H 1.09005 * 109.47206 * 182.47121 * 21 19 2 37 37 H 1.09003 * 109.47500 * 302.46763 * 21 19 2 38 38 H 0.96709 * 114.00562 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46699 * 195.69411 * 23 19 2 40 40 H 1.08997 * 109.47181 * 315.69234 * 23 19 2 41 41 H 1.09007 * 109.46584 * 60.00527 * 25 24 23 42 42 H 1.08996 * 109.47032 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47232 * 300.00776 * 25 24 23 44 44 H 1.09002 * 109.47009 * 59.99864 * 26 24 23 45 45 H 1.09004 * 109.47145 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47601 * 299.99755 * 26 24 23 47 47 H 1.09000 * 109.47427 * 43.14559 * 27 24 23 48 48 H 1.09004 * 109.47490 * 163.14690 * 27 24 23 49 49 H 1.09000 * 109.46839 * 283.14662 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5699 2.1975 -0.3034 5 6 3.5722 1.1935 0.3634 6 6 4.1199 0.1569 1.1272 7 6 5.4610 0.1716 1.4661 8 6 6.2701 1.2119 1.0654 9 6 5.7357 2.2663 0.3015 10 6 6.5640 3.3357 -0.1119 11 1 7.3861 3.6543 0.5117 12 6 6.3181 3.9810 -1.3291 13 7 5.3173 3.6003 -2.0809 14 14 7.4188 5.3858 -1.8804 15 1 8.8160 4.8992 -2.0082 16 1 6.9505 5.8953 -3.1944 17 1 7.3653 6.4796 -0.8774 18 6 4.3750 2.2506 -0.0488 19 6 2.1974 -1.2688 -0.0006 20 1 3.2630 -1.0731 -0.1203 21 6 1.9582 -1.9962 1.3240 22 8 0.5689 -2.3037 1.4544 23 6 1.7059 -2.1410 -1.1575 24 6 2.2831 -1.6156 -2.4733 25 6 3.7348 -1.1834 -2.2570 26 6 2.2321 -2.7208 -3.5300 27 6 1.4597 -0.4169 -2.9488 28 1 -0.3634 -0.2267 -1.0024 29 1 -0.3634 -0.7546 0.6975 30 1 -0.3633 0.9814 0.3048 31 1 3.4932 -0.6611 1.4504 32 1 5.8751 -0.6353 2.0525 33 1 7.3153 1.2184 1.3374 34 1 5.1471 4.0473 -2.9248 35 1 3.9555 3.0548 -0.6353 36 1 2.5379 -2.9192 1.3415 37 1 2.2680 -1.3569 2.1508 38 1 0.3436 -2.7671 2.2729 39 1 2.0332 -3.1690 -1.0019 40 1 0.6172 -2.1088 -1.1996 41 1 4.3214 -2.0374 -1.9183 42 1 4.1458 -0.8087 -3.1944 43 1 3.7712 -0.3960 -1.5041 44 1 1.1979 -3.0287 -3.6842 45 1 2.6429 -2.3463 -4.4676 46 1 2.8187 -3.5748 -3.1913 47 1 1.2441 0.2348 -2.1021 48 1 2.0240 0.1370 -3.6991 49 1 0.5242 -0.7685 -3.3841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456418841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:15 Heat of formation + Delta-G solvation = -49.760888 kcal Electronic energy + Delta-G solvation = -29351.608717 eV Core-core repulsion = 25665.219725 eV Total energy + Delta-G solvation = -3686.388993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37585 -37.81705 -37.00325 -36.55122 -34.42358 -33.63661 -30.84317 -30.07180 -29.43053 -27.13893 -27.00630 -26.50916 -25.89257 -25.10996 -22.33899 -21.17048 -20.93466 -18.94988 -18.37221 -17.83568 -17.00255 -15.99945 -15.68180 -15.55658 -15.11399 -14.78648 -14.34896 -14.18956 -13.92782 -13.80126 -13.28524 -13.22373 -13.05075 -12.84138 -12.64968 -12.35328 -12.22248 -11.90867 -11.83352 -11.53160 -11.44946 -11.37886 -11.24752 -11.12836 -11.03252 -10.98198 -10.59967 -10.45063 -10.29562 -10.21701 -10.05172 -10.00597 -9.85325 -9.60646 -9.27938 -8.91330 -8.06550 -7.59364 -7.41379 -6.67322 -4.45975 2.20577 2.81353 3.08286 3.10242 3.12952 3.54950 3.80441 3.94550 4.30403 4.65752 4.76850 5.02082 5.08982 5.22813 5.29732 5.41848 5.48017 5.57158 5.63002 5.73766 5.85467 5.88529 5.90174 5.94525 6.00922 6.08851 6.11825 6.14057 6.17208 6.24270 6.30819 6.36150 6.42530 6.45662 6.61200 6.67349 6.78634 6.85611 6.94735 6.99808 7.14130 7.24753 7.38278 7.55874 7.66839 7.78104 7.91470 8.08144 8.19277 8.51620 8.82711 8.83831 8.95627 10.23011 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.004666 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.021031 B = 5999.749530 C = 6488.100000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.606 5.606 3 C 0.565 3.435 4 O -0.543 6.543 5 C -0.131 4.131 6 C -0.235 4.235 7 C -0.105 4.105 8 C -0.202 4.202 9 C 0.096 3.904 10 C -0.461 4.461 11 H 0.078 0.922 12 C 0.070 3.930 13 N -0.801 5.801 14 Si 0.916 3.084 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.083 4.083 19 C 0.116 3.884 20 H 0.145 0.855 21 C 0.057 3.943 22 O -0.563 6.563 23 C -0.112 4.112 24 C -0.066 4.066 25 C -0.155 4.155 26 C -0.137 4.137 27 C -0.153 4.153 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.282 0.718 35 H 0.142 0.858 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.370 0.630 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -12.510 1.804 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.340 5.340 3 C 0.357 3.643 4 O -0.420 6.420 5 C -0.135 4.135 6 C -0.254 4.254 7 C -0.123 4.123 8 C -0.222 4.222 9 C 0.094 3.906 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.147 4.147 13 N -0.427 5.427 14 Si 0.741 3.259 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.103 4.103 19 C 0.013 3.987 20 H 0.162 0.838 21 C -0.022 4.022 22 O -0.368 6.368 23 C -0.151 4.151 24 C -0.066 4.066 25 C -0.212 4.212 26 C -0.195 4.195 27 C -0.210 4.210 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.217 0.783 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.069 0.931 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.347 -11.579 0.807 13.229 hybrid contribution 0.584 0.172 0.177 0.634 sum -5.763 -11.407 0.984 12.818 Atomic orbital electron populations 1.21806 0.80061 1.02985 1.01453 1.47570 1.06199 1.05248 1.74985 1.18913 0.87517 0.82365 0.75464 1.90687 1.70454 1.33281 1.47609 1.19563 0.91603 0.98468 1.03843 1.21166 0.95948 1.00659 1.07641 1.20470 0.93792 0.97891 1.00185 1.21218 0.98066 0.95628 1.07294 1.17638 0.91392 0.91679 0.89885 1.19524 1.12585 1.13514 1.03487 0.90395 1.25913 0.95229 0.97134 0.96426 1.69712 1.24986 1.36978 1.11000 0.86234 0.80483 0.80833 0.78361 1.19079 1.20309 1.18944 1.21897 0.92625 0.96727 0.99089 1.22225 1.00528 0.83417 0.92569 0.83771 1.22951 0.82298 0.98253 0.98658 1.86521 1.25013 1.80222 1.45043 1.21913 1.01507 0.98180 0.93457 1.20515 0.96139 0.95406 0.94583 1.22143 0.94452 1.01701 1.02875 1.21889 1.00989 0.97956 0.98644 1.22133 0.98612 0.97918 1.02331 0.93772 0.89482 0.91591 0.87061 0.88936 0.88627 0.90690 0.84090 0.92936 0.92332 0.78344 0.91525 0.90997 0.93090 0.92823 0.90394 0.93183 0.92886 0.93003 0.90508 0.93101 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 8.64 59.85 0.52 1.75 16 2 N -0.61 -10.52 1.42 -175.04 -0.25 -10.77 16 3 C 0.57 12.43 6.10 -12.31 -0.08 12.36 16 4 O -0.54 -13.74 16.17 5.33 0.09 -13.65 16 5 C -0.13 -3.02 4.17 -105.04 -0.44 -3.46 16 6 C -0.23 -4.70 7.40 -38.92 -0.29 -4.99 16 7 C -0.11 -2.13 10.01 -39.72 -0.40 -2.52 16 8 C -0.20 -4.63 9.78 -38.81 -0.38 -5.01 16 9 C 0.10 2.49 5.56 -106.87 -0.59 1.89 16 10 C -0.46 -11.97 9.06 -37.73 -0.34 -12.31 16 11 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 12 C 0.07 1.75 5.40 -17.34 -0.09 1.65 16 13 N -0.80 -20.96 10.57 55.55 0.59 -20.38 16 14 Si 0.92 18.89 29.56 -169.99 -5.02 13.87 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 18 C -0.08 -2.17 8.20 -38.44 -0.32 -2.49 16 19 C 0.12 1.72 1.19 -67.93 -0.08 1.64 16 20 H 0.15 2.39 2.18 -51.93 -0.11 2.27 16 21 C 0.06 0.68 5.87 37.16 0.22 0.90 16 22 O -0.56 -5.97 10.22 -35.23 -0.36 -6.33 16 23 C -0.11 -1.50 3.76 -26.74 -0.10 -1.60 16 24 C -0.07 -0.95 0.83 -154.51 -0.13 -1.08 16 25 C -0.15 -2.54 7.38 37.16 0.27 -2.27 16 26 C -0.14 -1.66 8.31 37.16 0.31 -1.35 16 27 C -0.15 -2.46 8.15 37.16 0.30 -2.16 16 28 H 0.04 0.66 6.42 -51.92 -0.33 0.32 16 29 H 0.09 1.20 5.24 -51.93 -0.27 0.93 16 30 H 0.07 1.11 7.34 -51.93 -0.38 0.73 16 31 H 0.11 1.88 2.68 -52.49 -0.14 1.74 16 32 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 35 H 0.14 4.06 5.81 -52.48 -0.30 3.76 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.75 6.52 -51.93 -0.34 0.41 16 38 H 0.37 2.31 9.12 45.56 0.42 2.73 16 39 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 40 H 0.07 0.97 6.46 -51.93 -0.34 0.64 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.51 4.10 -51.93 -0.21 1.30 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 47 H 0.08 1.41 3.64 -51.93 -0.19 1.22 16 48 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 49 H 0.04 0.63 8.03 -51.93 -0.42 0.22 16 LS Contribution 363.60 15.07 5.48 5.48 Total: -1.00 -29.27 363.60 -7.47 -36.74 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -6.38 Total: 14.08 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.61 Total: -19.04 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.34 Total: -31.14 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.27 Total: -19.98 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.27 -7.47 -36.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456418841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.019 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds