Wall clock time and date at job start Tue Mar 31 2020 12:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00015 * 2 1 4 4 O 1.21542 * 120.00345 * 343.24763 * 3 2 1 5 5 C 1.47889 * 119.99871 * 163.51686 * 3 2 1 6 6 C 1.39919 * 120.02379 * 338.15586 * 5 3 2 7 7 C 1.38331 * 120.35691 * 179.71742 * 6 5 3 8 8 C 1.37751 * 120.41308 * 0.54903 * 7 6 5 9 9 C 1.40747 * 120.03750 * 359.72752 * 8 7 6 10 10 C 1.41443 * 120.17624 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00245 * 327.71182 * 10 9 8 12 12 C 1.39938 * 119.99742 * 147.71654 * 10 9 8 13 13 N 1.30833 * 119.99984 * 0.39993 * 12 10 9 14 14 Si 1.86793 * 119.99959 * 180.40548 * 12 10 9 15 15 H 1.48497 * 109.47345 * 59.99683 * 14 12 10 16 16 H 1.48504 * 109.47141 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46952 * 299.99436 * 14 12 10 18 18 C 1.38996 * 120.02832 * 158.42149 * 5 3 2 19 19 C 1.46502 * 119.99842 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47151 * 173.30367 * 19 2 1 21 21 C 1.52998 * 109.46574 * 293.29941 * 19 2 1 22 22 O 1.42892 * 109.47330 * 62.47160 * 21 19 2 23 23 C 1.52997 * 109.47265 * 53.29819 * 19 2 1 24 24 C 1.52995 * 109.47202 * 75.69907 * 23 19 2 25 25 C 1.53007 * 109.47388 * 39.69772 * 24 23 19 26 26 C 1.52996 * 109.47350 * 159.69877 * 24 23 19 27 27 C 1.53000 * 109.47006 * 279.70217 * 24 23 19 28 28 H 1.09009 * 109.47190 * 102.74259 * 1 2 3 29 29 H 1.08995 * 109.47353 * 222.74614 * 1 2 3 30 30 H 1.08998 * 109.47052 * 342.74910 * 1 2 3 31 31 H 1.07999 * 119.82276 * 359.97099 * 6 5 3 32 32 H 1.08004 * 119.78983 * 180.25801 * 7 6 5 33 33 H 1.07996 * 119.98372 * 179.74328 * 8 7 6 34 34 H 0.97005 * 119.99994 * 180.02562 * 13 12 10 35 35 H 1.08006 * 120.19798 * 359.97438 * 18 5 3 36 36 H 1.09005 * 109.47206 * 182.47121 * 21 19 2 37 37 H 1.09003 * 109.47500 * 302.46763 * 21 19 2 38 38 H 0.96709 * 114.00562 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.46699 * 195.69411 * 23 19 2 40 40 H 1.08997 * 109.47181 * 315.69234 * 23 19 2 41 41 H 1.09007 * 109.46584 * 60.00527 * 25 24 23 42 42 H 1.08996 * 109.47032 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47232 * 300.00776 * 25 24 23 44 44 H 1.09002 * 109.47009 * 59.99864 * 26 24 23 45 45 H 1.09004 * 109.47145 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47601 * 299.99755 * 26 24 23 47 47 H 1.09000 * 109.47427 * 43.14559 * 27 24 23 48 48 H 1.09004 * 109.47490 * 163.14690 * 27 24 23 49 49 H 1.09000 * 109.46839 * 283.14662 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5699 2.1975 -0.3034 5 6 3.5722 1.1935 0.3634 6 6 4.1199 0.1569 1.1272 7 6 5.4610 0.1716 1.4661 8 6 6.2701 1.2119 1.0654 9 6 5.7357 2.2663 0.3015 10 6 6.5640 3.3357 -0.1119 11 1 7.3861 3.6543 0.5117 12 6 6.3181 3.9810 -1.3291 13 7 5.3173 3.6003 -2.0809 14 14 7.4188 5.3858 -1.8804 15 1 8.8160 4.8992 -2.0082 16 1 6.9505 5.8953 -3.1944 17 1 7.3653 6.4796 -0.8774 18 6 4.3750 2.2506 -0.0488 19 6 2.1974 -1.2688 -0.0006 20 1 3.2630 -1.0731 -0.1203 21 6 1.9582 -1.9962 1.3240 22 8 0.5689 -2.3037 1.4544 23 6 1.7059 -2.1410 -1.1575 24 6 2.2831 -1.6156 -2.4733 25 6 3.7348 -1.1834 -2.2570 26 6 2.2321 -2.7208 -3.5300 27 6 1.4597 -0.4169 -2.9488 28 1 -0.3634 -0.2267 -1.0024 29 1 -0.3634 -0.7546 0.6975 30 1 -0.3633 0.9814 0.3048 31 1 3.4932 -0.6611 1.4504 32 1 5.8751 -0.6353 2.0525 33 1 7.3153 1.2184 1.3374 34 1 5.1471 4.0473 -2.9248 35 1 3.9555 3.0548 -0.6353 36 1 2.5379 -2.9192 1.3415 37 1 2.2680 -1.3569 2.1508 38 1 0.3436 -2.7671 2.2729 39 1 2.0332 -3.1690 -1.0019 40 1 0.6172 -2.1088 -1.1996 41 1 4.3214 -2.0374 -1.9183 42 1 4.1458 -0.8087 -3.1944 43 1 3.7712 -0.3960 -1.5041 44 1 1.1979 -3.0287 -3.6842 45 1 2.6429 -2.3463 -4.4676 46 1 2.8187 -3.5748 -3.1913 47 1 1.2441 0.2348 -2.1021 48 1 2.0240 0.1370 -3.6991 49 1 0.5242 -0.7685 -3.3841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456418841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:14 Heat of formation + Delta-G solvation = -67.291185 kcal Electronic energy + Delta-G solvation = -29352.368888 eV Core-core repulsion = 25665.219725 eV Total energy + Delta-G solvation = -3687.149163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82282 -39.27719 -38.75268 -37.50562 -35.83747 -35.38958 -32.41178 -31.52019 -31.18281 -28.53308 -28.10638 -27.89414 -27.17806 -26.71537 -23.88356 -22.81643 -22.46500 -20.43083 -19.64849 -19.31617 -18.24110 -17.54556 -17.21532 -16.93566 -16.69252 -16.39177 -15.77315 -15.44913 -15.22258 -15.02489 -14.86485 -14.68064 -14.47158 -14.34837 -14.16147 -13.77028 -13.48250 -13.36086 -13.27155 -12.90857 -12.82702 -12.80740 -12.62727 -12.48221 -12.47271 -12.35360 -12.11295 -12.02864 -11.87354 -11.55892 -11.45730 -11.39119 -11.25255 -11.10935 -10.69546 -10.60835 -9.59046 -9.26271 -9.23950 -8.52273 -6.41398 0.41867 1.03618 1.35870 1.46658 1.48453 2.02409 2.18001 2.21911 2.82472 3.43717 3.63162 3.67485 3.78272 3.90963 3.99187 4.17478 4.29093 4.42791 4.46564 4.56391 4.59651 4.63240 4.68086 4.71187 4.76394 4.76838 4.89126 4.90519 4.90984 4.95910 5.06651 5.09299 5.11287 5.17422 5.21735 5.22921 5.28357 5.36306 5.42767 5.53363 5.55102 5.58606 5.74509 5.86908 5.96749 6.11083 6.31579 6.46302 6.66265 6.92131 6.97845 7.02287 7.29422 8.38680 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.004666 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.021031 B = 5999.749530 C = 6488.100000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.590 5.590 3 C 0.558 3.442 4 O -0.593 6.593 5 C -0.137 4.137 6 C -0.208 4.208 7 C -0.101 4.101 8 C -0.204 4.204 9 C 0.064 3.936 10 C -0.498 4.498 11 H 0.080 0.920 12 C 0.024 3.976 13 N -0.841 5.841 14 Si 0.986 3.014 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.120 4.120 19 C 0.102 3.898 20 H 0.128 0.872 21 C 0.064 3.936 22 O -0.571 6.571 23 C -0.103 4.103 24 C -0.064 4.064 25 C -0.153 4.153 26 C -0.132 4.132 27 C -0.152 4.152 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.045 0.955 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.109 0.891 34 H 0.280 0.720 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.026 0.974 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.054 -16.672 3.256 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.322 5.322 3 C 0.350 3.650 4 O -0.475 6.475 5 C -0.140 4.140 6 C -0.227 4.227 7 C -0.119 4.119 8 C -0.224 4.224 9 C 0.062 3.938 10 C -0.529 4.529 11 H 0.099 0.901 12 C -0.188 4.188 13 N -0.468 5.468 14 Si 0.807 3.193 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.140 4.140 19 C 0.000 4.000 20 H 0.145 0.855 21 C -0.015 4.015 22 O -0.380 6.380 23 C -0.141 4.141 24 C -0.064 4.064 25 C -0.210 4.210 26 C -0.189 4.189 27 C -0.209 4.209 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.064 0.936 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.244 0.756 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.524 -15.816 2.298 17.263 hybrid contribution 0.505 1.258 -0.185 1.369 sum -6.018 -14.558 2.112 15.894 Atomic orbital electron populations 1.21933 0.78744 1.02778 1.02597 1.47569 1.06964 1.04884 1.72750 1.18917 0.87354 0.83181 0.75511 1.90650 1.71238 1.35479 1.50135 1.19766 0.92106 0.98376 1.03735 1.21661 0.96513 0.99899 1.04644 1.20962 0.93414 0.98058 0.99424 1.21504 0.99214 0.95526 1.06165 1.17951 0.91413 0.93128 0.91311 1.19805 1.13453 1.15130 1.04510 0.90145 1.26800 0.96390 0.99432 0.96184 1.69878 1.26927 1.38598 1.11397 0.85193 0.78824 0.77510 0.77815 1.17859 1.19994 1.18508 1.21615 0.93598 0.97599 1.01221 1.22462 0.99364 0.82514 0.95668 0.85526 1.22734 0.83737 0.99163 0.95831 1.86417 1.23939 1.80742 1.46878 1.21868 1.01569 0.99099 0.91538 1.20516 0.94150 0.95297 0.96410 1.22117 0.96514 1.01416 1.00918 1.21836 1.02323 0.97385 0.97395 1.22122 0.99648 0.98383 1.00751 0.93039 0.86692 0.93599 0.83069 0.84032 0.87268 0.90917 0.88170 0.89438 0.93098 0.75561 0.88414 0.90596 0.90884 0.94774 0.93609 0.91676 0.93592 0.91097 0.93129 0.95489 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 8.64 127.77 1.10 3.53 16 2 N -0.59 -20.03 1.42 -825.97 -1.17 -21.20 16 3 C 0.56 25.54 6.10 86.80 0.53 26.07 16 4 O -0.59 -32.28 16.17 -3.85 -0.06 -32.34 16 5 C -0.14 -6.47 4.17 -20.13 -0.08 -6.55 16 6 C -0.21 -7.97 7.40 22.70 0.17 -7.80 16 7 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 8 C -0.20 -9.31 9.78 22.77 0.22 -9.09 16 9 C 0.06 3.47 5.56 -21.32 -0.12 3.35 16 10 C -0.50 -27.38 9.06 23.47 0.21 -27.17 16 11 H 0.08 4.17 7.84 -2.91 -0.02 4.14 16 12 C 0.02 1.27 5.40 85.25 0.46 1.73 16 13 N -0.84 -47.76 10.57 21.83 0.23 -47.53 16 14 Si 0.99 40.65 29.56 68.60 2.03 42.68 16 15 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 C -0.12 -6.70 8.20 23.01 0.19 -6.51 16 19 C 0.10 2.71 1.19 44.99 0.05 2.76 16 20 H 0.13 3.86 2.18 -2.39 -0.01 3.86 16 21 C 0.06 1.19 5.87 71.98 0.42 1.61 16 22 O -0.57 -9.03 10.22 -148.98 -1.52 -10.55 16 23 C -0.10 -2.34 3.76 30.59 0.11 -2.22 16 24 C -0.06 -1.71 0.83 -52.18 -0.04 -1.75 16 25 C -0.15 -4.95 7.38 71.98 0.53 -4.42 16 26 C -0.13 -2.78 8.31 71.98 0.60 -2.18 16 27 C -0.15 -4.93 8.15 71.98 0.59 -4.35 16 28 H 0.05 1.47 6.42 -2.38 -0.02 1.46 16 29 H 0.12 2.81 5.24 -2.39 -0.01 2.80 16 30 H 0.05 1.56 7.34 -2.39 -0.02 1.54 16 31 H 0.15 4.53 2.68 -2.91 -0.01 4.53 16 32 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 33 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.28 14.90 8.30 -92.70 -0.77 14.13 16 35 H 0.10 6.39 5.81 -2.91 -0.02 6.38 16 36 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.05 6.52 -2.39 -0.02 1.03 16 38 H 0.39 2.65 9.12 -74.05 -0.68 1.97 16 39 H 0.10 1.70 7.87 -2.38 -0.02 1.68 16 40 H 0.08 1.73 6.46 -2.39 -0.02 1.71 16 41 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 1.79 4.10 -2.39 -0.01 1.78 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 47 H 0.05 1.91 3.64 -2.39 -0.01 1.90 16 48 H 0.03 0.96 8.03 -2.39 -0.02 0.94 16 49 H 0.06 1.77 8.03 -2.39 -0.02 1.75 16 Total: -1.00 -71.98 363.60 4.98 -67.00 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.31 Total: 38.51 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 5.17 Total: -36.57 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -0.94 Total: -68.72 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.59 Total: -42.90 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -71.98 4.98 -67.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456418841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.290 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds