Wall clock time and date at job start Tue Mar 31 2020 12:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 120.00124 * 2 1 4 4 O 1.21592 * 119.99993 * 186.85082 * 3 2 1 5 5 C 1.47637 * 120.00150 * 6.85341 * 3 2 1 6 6 C 1.40014 * 119.89263 * 325.50253 * 5 3 2 7 7 C 1.36316 * 120.10713 * 179.71690 * 6 5 3 8 8 C 1.40893 * 119.89167 * 0.57696 * 7 6 5 9 9 C 1.41113 * 120.10349 * 179.67575 * 8 7 6 10 10 H 1.07997 * 119.99399 * 208.44747 * 9 8 7 11 11 C 1.40223 * 119.99980 * 28.45038 * 9 8 7 12 12 N 1.30645 * 119.99913 * 10.44412 * 11 9 8 13 13 Si 1.86799 * 119.99889 * 190.44364 * 11 9 8 14 14 H 1.48500 * 109.47118 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47251 * 119.99731 * 13 11 9 16 16 H 1.48498 * 109.47241 * 240.00051 * 13 11 9 17 17 C 1.40881 * 119.79127 * 359.69633 * 8 7 6 18 18 C 1.36323 * 119.89211 * 0.02562 * 17 8 7 19 19 C 1.46503 * 120.00011 * 180.02562 * 2 1 3 20 20 H 1.09008 * 109.47306 * 195.44130 * 19 2 1 21 21 C 1.53003 * 109.47232 * 75.44370 * 19 2 1 22 22 O 1.42902 * 109.46717 * 287.92962 * 21 19 2 23 23 C 1.52998 * 109.47206 * 315.44137 * 19 2 1 24 24 C 1.53006 * 109.47219 * 285.76990 * 23 19 2 25 25 C 1.52997 * 109.46957 * 61.43729 * 24 23 19 26 26 C 1.52994 * 109.46838 * 301.43739 * 24 23 19 27 27 C 1.52997 * 109.47018 * 181.43702 * 24 23 19 28 28 H 1.09004 * 109.46808 * 204.06801 * 1 2 3 29 29 H 1.08999 * 109.46871 * 324.06324 * 1 2 3 30 30 H 1.08995 * 109.47308 * 84.06166 * 1 2 3 31 31 H 1.08004 * 119.94681 * 359.97438 * 6 5 3 32 32 H 1.07997 * 120.05898 * 180.25120 * 7 6 5 33 33 H 0.97002 * 119.99388 * 180.02562 * 12 11 9 34 34 H 1.08001 * 120.05851 * 179.97438 * 17 8 7 35 35 H 1.08002 * 119.94622 * 179.97438 * 18 17 8 36 36 H 1.09005 * 109.46964 * 47.92834 * 21 19 2 37 37 H 1.09002 * 109.46958 * 167.92818 * 21 19 2 38 38 H 0.96703 * 113.99797 * 180.02562 * 22 21 19 39 39 H 1.08996 * 109.47432 * 165.76719 * 23 19 2 40 40 H 1.09000 * 109.46783 * 45.77039 * 23 19 2 41 41 H 1.08995 * 109.47312 * 283.55802 * 25 24 23 42 42 H 1.08993 * 109.47370 * 43.55975 * 25 24 23 43 43 H 1.09002 * 109.47086 * 163.56245 * 25 24 23 44 44 H 1.09006 * 109.47315 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47186 * 300.00088 * 26 24 23 46 46 H 1.09000 * 109.47503 * 60.00219 * 26 24 23 47 47 H 1.08996 * 109.47321 * 300.00202 * 27 24 23 48 48 H 1.09007 * 109.47208 * 60.00192 * 27 24 23 49 49 H 1.08998 * 109.47025 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3483 1.1709 -0.1256 5 6 1.4086 2.4412 0.1526 6 6 0.1291 2.5824 -0.3982 7 6 -0.5513 3.7549 -0.2550 8 6 0.0398 4.8297 0.4381 9 6 -0.6579 6.0477 0.5831 10 1 -0.1119 6.9748 0.6765 11 6 -2.0599 6.0542 0.6060 12 7 -2.7169 4.9288 0.6989 13 14 -2.9882 7.6720 0.5035 14 1 -2.0194 8.7932 0.4051 15 1 -3.8616 7.6663 -0.6974 16 1 -3.8214 7.8425 1.7208 17 6 1.3298 4.6847 0.9856 18 6 2.0002 3.5065 0.8422 19 6 2.1975 -1.2687 -0.0006 20 1 3.2371 -1.0883 0.2731 21 6 2.1385 -1.8911 -1.3971 22 8 0.8200 -2.3840 -1.6435 23 6 1.5624 -2.2248 1.0111 24 6 1.9287 -1.7834 2.4296 25 6 1.3781 -0.3790 2.6848 26 6 3.4510 -1.7700 2.5822 27 6 1.3234 -2.7600 3.4399 28 1 -0.3633 -0.9384 0.4191 29 1 -0.3633 0.8321 0.6031 30 1 -0.3633 0.1063 -1.0221 31 1 -0.3211 1.7597 -0.9338 32 1 -1.5399 3.8616 -0.6767 33 1 -3.6868 4.9333 0.7144 34 1 1.7871 5.5059 1.5174 35 1 2.9893 3.3945 1.2612 36 1 2.3894 -1.1361 -2.1422 37 1 2.8513 -2.7134 -1.4587 38 1 0.7093 -2.7934 -2.5126 39 1 1.9324 -3.2353 0.8380 40 1 0.4787 -2.2098 0.8944 41 1 2.0062 0.3549 2.1799 42 1 0.3605 -0.3122 2.3002 43 1 1.3755 -0.1790 3.7563 44 1 3.7121 -1.4551 3.5926 45 1 3.8432 -2.7705 2.4003 46 1 3.8823 -1.0743 1.8625 47 1 0.2389 -2.7696 3.3310 48 1 1.7157 -3.7606 3.2580 49 1 1.5848 -2.4458 4.4503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456427342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:19 Heat of formation + Delta-G solvation = -62.654129 kcal Electronic energy + Delta-G solvation = -28492.376457 eV Core-core repulsion = 24805.428371 eV Total energy + Delta-G solvation = -3686.948086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.18722 -38.02352 -36.84717 -36.51874 -34.54150 -33.77833 -31.26593 -29.53439 -29.43163 -27.37633 -27.06636 -26.53985 -25.90578 -25.55014 -22.40566 -20.93696 -20.60885 -19.01926 -18.42317 -17.45879 -17.36232 -16.25411 -16.02631 -15.49858 -15.35801 -14.65065 -14.30446 -14.15978 -14.02661 -13.88122 -13.49191 -13.12495 -13.08453 -12.76889 -12.60805 -12.37359 -12.13763 -12.00492 -11.81656 -11.73636 -11.59722 -11.49544 -11.36405 -11.22353 -11.08437 -11.01959 -10.90218 -10.56206 -10.43620 -10.37240 -10.15806 -9.99567 -9.95397 -9.44868 -9.31439 -8.87936 -8.06254 -7.61853 -7.43506 -6.90518 -4.55638 2.33177 2.95268 2.98915 3.04116 3.05534 3.56396 3.76869 3.82390 4.32336 4.57532 4.67758 4.89373 4.95260 5.26887 5.28010 5.36310 5.46150 5.56704 5.62640 5.63420 5.68080 5.76160 5.81710 5.87107 5.90219 5.95662 6.02627 6.05707 6.14590 6.24143 6.28404 6.29204 6.31382 6.37431 6.44616 6.60780 6.70980 6.82829 6.89878 7.03201 7.14747 7.19301 7.50585 7.58424 7.66683 7.87069 7.92026 8.11272 8.15352 8.47722 8.70970 8.81019 9.01480 10.00554 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.003444 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.884280 B = 8128.108444 C = 8247.424731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.606 5.606 3 C 0.576 3.424 4 O -0.574 6.574 5 C -0.271 4.271 6 C -0.079 4.079 7 C -0.172 4.172 8 C 0.127 3.873 9 C -0.449 4.449 10 H 0.082 0.918 11 C 0.073 3.927 12 N -0.784 5.784 13 Si 0.914 3.086 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.272 1.272 17 C -0.233 4.233 18 C -0.031 4.031 19 C 0.142 3.858 20 H 0.110 0.890 21 C 0.065 3.935 22 O -0.565 6.565 23 C -0.111 4.111 24 C -0.069 4.069 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.283 0.717 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.372 0.628 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.050 0.950 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -13.588 -0.131 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.339 5.339 3 C 0.372 3.628 4 O -0.455 6.455 5 C -0.275 4.275 6 C -0.098 4.098 7 C -0.191 4.191 8 C 0.124 3.876 9 C -0.477 4.477 10 H 0.100 0.900 11 C -0.146 4.146 12 N -0.409 5.409 13 Si 0.738 3.262 14 H -0.183 1.183 15 H -0.196 1.196 16 H -0.198 1.198 17 C -0.253 4.253 18 C -0.050 4.050 19 C 0.038 3.962 20 H 0.127 0.873 21 C -0.014 4.014 22 O -0.370 6.370 23 C -0.149 4.149 24 C -0.069 4.069 25 C -0.200 4.200 26 C -0.203 4.203 27 C -0.195 4.195 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.218 0.782 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.603 -13.442 0.442 13.699 hybrid contribution -0.479 0.418 -0.618 0.886 sum 2.124 -13.024 -0.176 13.198 Atomic orbital electron populations 1.22217 0.79914 1.02764 1.01146 1.47689 1.06811 1.04643 1.74760 1.18688 0.86510 0.83685 0.73952 1.90632 1.14991 1.87702 1.52209 1.18872 0.97810 0.94156 1.16694 1.21064 0.92906 0.97633 0.98194 1.21072 1.01100 0.93679 1.03299 1.17798 0.90592 0.92895 0.86353 1.19818 0.91012 0.94670 1.42223 0.90016 1.26024 0.98294 0.98235 0.92063 1.69716 1.09643 1.27786 1.33730 0.86163 0.79566 0.81766 0.78743 1.18263 1.19565 1.19763 1.20730 0.98537 0.97321 1.08666 1.20254 0.96780 0.92327 0.95682 1.21191 0.98378 0.83950 0.92634 0.87281 1.22698 0.83939 0.96824 0.97893 1.86522 1.30778 1.80290 1.39406 1.21902 1.02223 0.97833 0.92946 1.20555 0.95470 0.96160 0.94734 1.22092 1.01780 0.95503 1.00609 1.21989 0.95127 1.01307 1.01893 1.21855 1.00608 0.98454 0.98567 0.91542 0.89662 0.93156 0.87582 0.85930 0.90570 0.88537 0.88750 0.93364 0.93486 0.78153 0.91511 0.90174 0.91766 0.92166 0.93749 0.92902 0.93131 0.91903 0.92773 0.93132 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 5.87 59.84 0.35 1.64 16 2 N -0.61 -10.15 1.34 -175.12 -0.23 -10.39 16 3 C 0.58 11.98 5.61 -12.42 -0.07 11.91 16 4 O -0.57 -13.23 16.24 5.28 0.09 -13.15 16 5 C -0.27 -6.11 5.44 -104.73 -0.57 -6.68 16 6 C -0.08 -1.76 7.45 -39.61 -0.30 -2.05 16 7 C -0.17 -4.22 8.60 -39.27 -0.34 -4.56 16 8 C 0.13 3.24 5.56 -106.80 -0.59 2.64 16 9 C -0.45 -11.30 9.06 -37.75 -0.34 -11.65 16 10 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 11 C 0.07 1.72 5.26 -17.31 -0.09 1.63 16 12 N -0.78 -18.92 10.79 55.56 0.60 -18.32 16 13 Si 0.91 17.65 29.57 -169.99 -5.03 12.62 16 14 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 15 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 17 C -0.23 -5.64 9.73 -39.27 -0.38 -6.03 16 18 C -0.03 -0.73 9.53 -39.61 -0.38 -1.11 16 19 C 0.14 2.03 2.15 -67.93 -0.15 1.88 16 20 H 0.11 1.71 4.73 -51.92 -0.25 1.46 16 21 C 0.07 0.80 6.86 37.16 0.26 1.06 16 22 O -0.57 -6.32 11.98 -35.23 -0.42 -6.74 16 23 C -0.11 -1.36 3.20 -26.73 -0.09 -1.45 16 24 C -0.07 -0.86 0.80 -154.51 -0.12 -0.98 16 25 C -0.14 -2.14 7.20 37.16 0.27 -1.87 16 26 C -0.15 -1.79 8.06 37.15 0.30 -1.49 16 27 C -0.14 -1.47 8.41 37.16 0.31 -1.16 16 28 H 0.07 0.93 5.10 -51.93 -0.26 0.66 16 29 H 0.09 1.51 5.34 -51.93 -0.28 1.23 16 30 H 0.05 0.78 6.89 -51.93 -0.36 0.43 16 31 H 0.11 2.10 4.69 -52.48 -0.25 1.85 16 32 H 0.12 3.08 6.17 -52.49 -0.32 2.75 16 33 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 34 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.09 2.11 7.98 -52.49 -0.42 1.70 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.37 2.59 9.12 45.56 0.42 3.01 16 39 H 0.07 0.73 8.06 -51.93 -0.42 0.32 16 40 H 0.08 1.03 5.40 -51.93 -0.28 0.75 16 41 H 0.06 1.14 5.35 -51.93 -0.28 0.86 16 42 H 0.06 0.92 5.62 -51.93 -0.29 0.62 16 43 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -28.23 369.82 -8.00 -36.24 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.65 Total: 12.43 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.93 Total: -18.27 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 0.36 Total: -28.71 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.34 Total: -19.89 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.23 -8.00 -36.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456427342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.416 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds