Wall clock time and date at job start Tue Mar 31 2020 12:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 120.00124 * 2 1 4 4 O 1.21592 * 119.99993 * 186.85082 * 3 2 1 5 5 C 1.47637 * 120.00150 * 6.85341 * 3 2 1 6 6 C 1.40014 * 119.89263 * 325.50253 * 5 3 2 7 7 C 1.36316 * 120.10713 * 179.71690 * 6 5 3 8 8 C 1.40893 * 119.89167 * 0.57696 * 7 6 5 9 9 C 1.41113 * 120.10349 * 179.67575 * 8 7 6 10 10 H 1.07997 * 119.99399 * 208.44747 * 9 8 7 11 11 C 1.40223 * 119.99980 * 28.45038 * 9 8 7 12 12 N 1.30645 * 119.99913 * 10.44412 * 11 9 8 13 13 Si 1.86799 * 119.99889 * 190.44364 * 11 9 8 14 14 H 1.48500 * 109.47118 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47251 * 119.99731 * 13 11 9 16 16 H 1.48498 * 109.47241 * 240.00051 * 13 11 9 17 17 C 1.40881 * 119.79127 * 359.69633 * 8 7 6 18 18 C 1.36323 * 119.89211 * 0.02562 * 17 8 7 19 19 C 1.46503 * 120.00011 * 180.02562 * 2 1 3 20 20 H 1.09008 * 109.47306 * 195.44130 * 19 2 1 21 21 C 1.53003 * 109.47232 * 75.44370 * 19 2 1 22 22 O 1.42902 * 109.46717 * 287.92962 * 21 19 2 23 23 C 1.52998 * 109.47206 * 315.44137 * 19 2 1 24 24 C 1.53006 * 109.47219 * 285.76990 * 23 19 2 25 25 C 1.52997 * 109.46957 * 61.43729 * 24 23 19 26 26 C 1.52994 * 109.46838 * 301.43739 * 24 23 19 27 27 C 1.52997 * 109.47018 * 181.43702 * 24 23 19 28 28 H 1.09004 * 109.46808 * 204.06801 * 1 2 3 29 29 H 1.08999 * 109.46871 * 324.06324 * 1 2 3 30 30 H 1.08995 * 109.47308 * 84.06166 * 1 2 3 31 31 H 1.08004 * 119.94681 * 359.97438 * 6 5 3 32 32 H 1.07997 * 120.05898 * 180.25120 * 7 6 5 33 33 H 0.97002 * 119.99388 * 180.02562 * 12 11 9 34 34 H 1.08001 * 120.05851 * 179.97438 * 17 8 7 35 35 H 1.08002 * 119.94622 * 179.97438 * 18 17 8 36 36 H 1.09005 * 109.46964 * 47.92834 * 21 19 2 37 37 H 1.09002 * 109.46958 * 167.92818 * 21 19 2 38 38 H 0.96703 * 113.99797 * 180.02562 * 22 21 19 39 39 H 1.08996 * 109.47432 * 165.76719 * 23 19 2 40 40 H 1.09000 * 109.46783 * 45.77039 * 23 19 2 41 41 H 1.08995 * 109.47312 * 283.55802 * 25 24 23 42 42 H 1.08993 * 109.47370 * 43.55975 * 25 24 23 43 43 H 1.09002 * 109.47086 * 163.56245 * 25 24 23 44 44 H 1.09006 * 109.47315 * 179.97438 * 26 24 23 45 45 H 1.08999 * 109.47186 * 300.00088 * 26 24 23 46 46 H 1.09000 * 109.47503 * 60.00219 * 26 24 23 47 47 H 1.08996 * 109.47321 * 300.00202 * 27 24 23 48 48 H 1.09007 * 109.47208 * 60.00192 * 27 24 23 49 49 H 1.08998 * 109.47025 * 179.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3483 1.1709 -0.1256 5 6 1.4086 2.4412 0.1526 6 6 0.1291 2.5824 -0.3982 7 6 -0.5513 3.7549 -0.2550 8 6 0.0398 4.8297 0.4381 9 6 -0.6579 6.0477 0.5831 10 1 -0.1119 6.9748 0.6765 11 6 -2.0599 6.0542 0.6060 12 7 -2.7169 4.9288 0.6989 13 14 -2.9882 7.6720 0.5035 14 1 -2.0194 8.7932 0.4051 15 1 -3.8616 7.6663 -0.6974 16 1 -3.8214 7.8425 1.7208 17 6 1.3298 4.6847 0.9856 18 6 2.0002 3.5065 0.8422 19 6 2.1975 -1.2687 -0.0006 20 1 3.2371 -1.0883 0.2731 21 6 2.1385 -1.8911 -1.3971 22 8 0.8200 -2.3840 -1.6435 23 6 1.5624 -2.2248 1.0111 24 6 1.9287 -1.7834 2.4296 25 6 1.3781 -0.3790 2.6848 26 6 3.4510 -1.7700 2.5822 27 6 1.3234 -2.7600 3.4399 28 1 -0.3633 -0.9384 0.4191 29 1 -0.3633 0.8321 0.6031 30 1 -0.3633 0.1063 -1.0221 31 1 -0.3211 1.7597 -0.9338 32 1 -1.5399 3.8616 -0.6767 33 1 -3.6868 4.9333 0.7144 34 1 1.7871 5.5059 1.5174 35 1 2.9893 3.3945 1.2612 36 1 2.3894 -1.1361 -2.1422 37 1 2.8513 -2.7134 -1.4587 38 1 0.7093 -2.7934 -2.5126 39 1 1.9324 -3.2353 0.8380 40 1 0.4787 -2.2098 0.8944 41 1 2.0062 0.3549 2.1799 42 1 0.3605 -0.3122 2.3002 43 1 1.3755 -0.1790 3.7563 44 1 3.7121 -1.4551 3.5926 45 1 3.8432 -2.7705 2.4003 46 1 3.8823 -1.0743 1.8625 47 1 0.2389 -2.7696 3.3310 48 1 1.7157 -3.7606 3.2580 49 1 1.5848 -2.4458 4.4503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456427342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:18 Heat of formation + Delta-G solvation = -77.987062 kcal Electronic energy + Delta-G solvation = -28493.041343 eV Core-core repulsion = 24805.428371 eV Total energy + Delta-G solvation = -3687.612971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59622 -39.53032 -38.49145 -37.43620 -35.97692 -35.52093 -32.68965 -31.35365 -31.03288 -28.49891 -28.08938 -27.79216 -27.56126 -26.72038 -24.00243 -22.77084 -22.05755 -20.43110 -19.55252 -19.25617 -18.50334 -17.64357 -17.54290 -17.05093 -16.70386 -15.95710 -15.75011 -15.42173 -15.31501 -15.00584 -14.92533 -14.70271 -14.36745 -14.23947 -14.10433 -13.83994 -13.58224 -13.33619 -13.24869 -13.08748 -12.82499 -12.80529 -12.71553 -12.55324 -12.48181 -12.42906 -12.25454 -12.13688 -11.72712 -11.48191 -11.41436 -11.32268 -11.15796 -11.08049 -10.94444 -10.53189 -9.53067 -9.45793 -9.27432 -8.69010 -6.46188 0.53980 1.14754 1.39950 1.42585 1.54834 2.03767 2.18593 2.22880 2.77337 3.44371 3.63338 3.67600 3.88606 3.95053 4.07300 4.23001 4.26659 4.28662 4.40602 4.41424 4.45361 4.59563 4.64373 4.70844 4.78516 4.79638 4.85288 4.90480 4.94113 4.97409 5.00887 5.06536 5.08329 5.13863 5.19188 5.21534 5.28458 5.32969 5.43476 5.50068 5.57447 5.62696 5.73708 5.87215 6.00811 6.03390 6.26327 6.55656 6.59290 6.82792 6.92157 6.93776 7.39494 8.25044 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.003444 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.884280 B = 8128.108444 C = 8247.424731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.592 5.592 3 C 0.576 3.424 4 O -0.602 6.602 5 C -0.276 4.276 6 C -0.068 4.068 7 C -0.190 4.190 8 C 0.100 3.900 9 C -0.482 4.482 10 H 0.080 0.920 11 C 0.037 3.963 12 N -0.809 5.809 13 Si 0.987 3.013 14 H -0.260 1.260 15 H -0.261 1.261 16 H -0.264 1.264 17 C -0.247 4.247 18 C -0.041 4.041 19 C 0.133 3.867 20 H 0.095 0.905 21 C 0.074 3.926 22 O -0.573 6.573 23 C -0.101 4.101 24 C -0.068 4.068 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.133 4.133 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.293 0.707 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.393 0.607 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.051 0.949 45 H 0.073 0.927 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -15.755 -0.360 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.323 5.323 3 C 0.371 3.629 4 O -0.486 6.486 5 C -0.280 4.280 6 C -0.087 4.087 7 C -0.209 4.209 8 C 0.097 3.903 9 C -0.510 4.510 10 H 0.098 0.902 11 C -0.180 4.180 12 N -0.434 5.434 13 Si 0.807 3.193 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.189 1.189 17 C -0.267 4.267 18 C -0.060 4.060 19 C 0.031 3.969 20 H 0.112 0.888 21 C -0.005 4.005 22 O -0.381 6.381 23 C -0.139 4.139 24 C -0.068 4.068 25 C -0.197 4.197 26 C -0.199 4.199 27 C -0.190 4.190 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.050 0.950 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.607 -15.665 0.200 15.748 hybrid contribution -0.141 0.964 -0.532 1.110 sum 1.466 -14.700 -0.332 14.777 Atomic orbital electron populations 1.22196 0.79071 1.03218 1.01228 1.47621 1.07272 1.04605 1.72837 1.18404 0.86042 0.84295 0.74202 1.90609 1.15985 1.88178 1.53825 1.19174 0.97981 0.95082 1.15779 1.21259 0.92514 0.97518 0.97397 1.21065 1.01141 0.94498 1.04212 1.18122 0.91287 0.93763 0.87093 1.20049 0.92362 0.94525 1.44114 0.90223 1.26828 0.98392 1.01816 0.90994 1.69744 1.10519 1.29699 1.33425 0.85077 0.78017 0.77050 0.79141 1.18337 1.18575 1.18893 1.20858 0.98637 0.97928 1.09229 1.20399 0.97031 0.92544 0.96008 1.21452 0.97499 0.82995 0.94982 0.88756 1.22490 0.85233 0.97215 0.95594 1.86458 1.29962 1.80438 1.41217 1.21851 1.01879 0.98286 0.91843 1.20562 0.95577 0.94906 0.95726 1.22056 1.00848 0.96679 1.00129 1.21947 0.94928 1.01955 1.01117 1.21803 1.00665 0.98691 0.97833 0.89123 0.91789 0.92497 0.85118 0.86781 0.89547 0.88043 0.88402 0.95322 0.90599 0.75747 0.89045 0.90272 0.94986 0.92684 0.93782 0.92994 0.90837 0.94347 0.92540 0.91243 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.56 5.87 127.77 0.75 3.31 16 2 N -0.59 -19.52 1.34 -826.22 -1.11 -20.63 16 3 C 0.58 24.33 5.61 86.73 0.49 24.82 16 4 O -0.60 -28.40 16.24 -4.00 -0.07 -28.47 16 5 C -0.28 -12.77 5.44 -19.94 -0.11 -12.88 16 6 C -0.07 -3.09 7.45 22.25 0.17 -2.93 16 7 C -0.19 -9.59 8.60 22.47 0.19 -9.40 16 8 C 0.10 5.32 5.56 -21.28 -0.12 5.21 16 9 C -0.48 -25.06 9.06 23.46 0.21 -24.85 16 10 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 11 C 0.04 1.75 5.26 85.35 0.45 2.20 16 12 N -0.81 -39.43 10.79 21.87 0.24 -39.20 16 13 Si 0.99 36.03 29.57 68.60 2.03 38.06 16 14 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 15 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 16 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 17 C -0.25 -12.50 9.73 22.47 0.22 -12.29 16 18 C -0.04 -1.98 9.53 22.25 0.21 -1.76 16 19 C 0.13 3.59 2.15 44.99 0.10 3.68 16 20 H 0.09 2.89 4.73 -2.38 -0.01 2.88 16 21 C 0.07 1.62 6.86 71.98 0.49 2.11 16 22 O -0.57 -10.86 11.98 -148.98 -1.79 -12.64 16 23 C -0.10 -2.19 3.20 30.60 0.10 -2.09 16 24 C -0.07 -1.56 0.80 -52.18 -0.04 -1.60 16 25 C -0.14 -4.16 7.20 71.98 0.52 -3.64 16 26 C -0.14 -3.28 8.06 71.98 0.58 -2.70 16 27 C -0.13 -2.44 8.41 71.98 0.61 -1.84 16 28 H 0.09 2.33 5.10 -2.38 -0.01 2.32 16 29 H 0.06 2.25 5.34 -2.39 -0.01 2.23 16 30 H 0.06 1.67 6.89 -2.39 -0.02 1.66 16 31 H 0.13 5.13 4.69 -2.91 -0.01 5.12 16 32 H 0.11 5.90 6.17 -2.91 -0.02 5.88 16 33 H 0.29 12.73 8.29 -92.71 -0.77 11.97 16 34 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 35 H 0.10 4.59 7.98 -2.91 -0.02 4.57 16 36 H 0.03 0.74 8.14 -2.38 -0.02 0.73 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.39 4.06 9.12 -74.06 -0.68 3.38 16 39 H 0.09 1.60 8.06 -2.39 -0.02 1.59 16 40 H 0.08 1.77 5.40 -2.39 -0.01 1.76 16 41 H 0.03 1.15 5.35 -2.39 -0.01 1.13 16 42 H 0.05 1.65 5.62 -2.39 -0.01 1.64 16 43 H 0.04 1.27 8.03 -2.39 -0.02 1.25 16 44 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.04 1.08 6.11 -2.39 -0.01 1.06 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -62.90 369.82 4.41 -58.48 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: 0.29 Total: 39.04 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 4.81 Total: -34.64 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.87 Total: -59.83 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.85 Total: -41.11 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -62.90 4.41 -58.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456427342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.503 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds