Wall clock time and date at job start Tue Mar 31 2020 12:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34774 * 120.00266 * 2 1 4 4 O 1.21583 * 120.00245 * 185.17144 * 3 2 1 5 5 C 1.47636 * 119.99770 * 5.16485 * 3 2 1 6 6 C 1.40016 * 119.89933 * 214.90054 * 5 3 2 7 7 C 1.36318 * 120.10937 * 179.76238 * 6 5 3 8 8 C 1.40895 * 119.88849 * 0.51590 * 7 6 5 9 9 C 1.41113 * 120.09939 * 179.71711 * 8 7 6 10 10 H 1.07991 * 119.99863 * 214.15587 * 9 8 7 11 11 C 1.40227 * 120.00033 * 34.15225 * 9 8 7 12 12 N 1.30651 * 120.00059 * 5.66300 * 11 9 8 13 13 Si 1.86795 * 119.99960 * 185.65355 * 11 9 8 14 14 H 1.48500 * 109.47147 * 60.00650 * 13 11 9 15 15 H 1.48498 * 109.47148 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47183 * 300.00256 * 13 11 9 17 17 C 1.40886 * 119.79298 * 359.73933 * 8 7 6 18 18 C 1.36313 * 119.89351 * 0.02562 * 17 8 7 19 19 C 1.46502 * 120.00107 * 179.97438 * 2 1 3 20 20 H 1.08993 * 109.47521 * 173.42571 * 19 2 1 21 21 C 1.53002 * 109.47131 * 293.42688 * 19 2 1 22 22 O 1.42894 * 109.47334 * 64.99791 * 21 19 2 23 23 C 1.52996 * 109.47041 * 53.42279 * 19 2 1 24 24 C 1.53000 * 109.47391 * 66.85949 * 23 19 2 25 25 C 1.52998 * 109.46913 * 53.36935 * 24 23 19 26 26 C 1.53001 * 109.47481 * 173.37451 * 24 23 19 27 27 C 1.53003 * 109.46523 * 293.37353 * 24 23 19 28 28 H 1.08999 * 109.47587 * 274.05560 * 1 2 3 29 29 H 1.08999 * 109.46998 * 34.06358 * 1 2 3 30 30 H 1.09009 * 109.46937 * 154.05724 * 1 2 3 31 31 H 1.07997 * 119.94527 * 0.02610 * 6 5 3 32 32 H 1.07998 * 120.05127 * 180.23468 * 7 6 5 33 33 H 0.96994 * 119.99764 * 179.97438 * 12 11 9 34 34 H 1.07998 * 120.04751 * 179.97438 * 17 8 7 35 35 H 1.07996 * 119.94421 * 179.97438 * 18 17 8 36 36 H 1.09003 * 109.47198 * 184.99758 * 21 19 2 37 37 H 1.09003 * 109.46688 * 304.99538 * 21 19 2 38 38 H 0.96705 * 114.00044 * 180.02562 * 22 21 19 39 39 H 1.09007 * 109.47343 * 306.85359 * 23 19 2 40 40 H 1.09001 * 109.47074 * 186.85618 * 23 19 2 41 41 H 1.08999 * 109.46904 * 60.00892 * 25 24 23 42 42 H 1.09005 * 109.46704 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47601 * 300.00221 * 25 24 23 44 44 H 1.08997 * 109.46836 * 59.99915 * 26 24 23 45 45 H 1.08997 * 109.47137 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.46896 * 299.99989 * 26 24 23 47 47 H 1.09005 * 109.47054 * 66.81861 * 27 24 23 48 48 H 1.09005 * 109.46904 * 186.81509 * 27 24 23 49 49 H 1.08993 * 109.47415 * 306.81328 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3510 1.1693 -0.0949 5 6 1.4052 2.4431 0.1151 6 6 1.8646 3.5764 -0.5670 7 6 1.1878 4.7555 -0.4676 8 6 0.0303 4.8354 0.3318 9 6 -0.6704 6.0552 0.4426 10 1 -1.1557 6.3167 1.3712 11 6 -0.7365 6.9279 -0.6531 12 7 -0.2458 6.5645 -1.8081 13 14 -1.5265 8.6097 -0.4613 14 1 -0.7941 9.3856 0.5715 15 1 -1.4707 9.3334 -1.7568 16 1 -2.9430 8.4468 -0.0464 17 6 -0.4250 3.6937 1.0205 18 6 0.2557 2.5179 0.9111 19 6 2.1975 -1.2687 0.0006 20 1 3.2632 -1.0731 -0.1172 21 6 1.9558 -1.9966 1.3245 22 8 0.5766 -2.3563 1.4255 23 6 1.7081 -2.1407 -1.1574 24 6 2.1026 -1.4926 -2.4861 25 6 3.6059 -1.2082 -2.4881 26 6 1.7613 -2.4408 -3.6373 27 6 1.3351 -0.1807 -2.6612 28 1 -0.3634 0.0727 1.0251 29 1 -0.3633 0.8513 -0.5756 30 1 -0.3633 -0.9242 -0.4496 31 1 2.7542 3.5151 -1.1762 32 1 1.5408 5.6280 -0.9971 33 1 -0.2918 7.1680 -2.5661 34 1 -1.3116 3.7505 1.6347 35 1 -0.0923 1.6423 1.4390 36 1 2.5697 -2.8965 1.3617 37 1 2.2219 -1.3407 2.1535 38 1 0.3504 -2.8221 2.2422 39 1 0.6233 -2.2358 -1.1075 40 1 2.1630 -3.1286 -1.0858 41 1 4.1527 -2.1429 -2.3633 42 1 3.8869 -0.7461 -3.4345 43 1 3.8491 -0.5327 -1.6680 44 1 0.6903 -2.6434 -3.6357 45 1 2.0420 -1.9789 -4.5838 46 1 2.3080 -3.3755 -3.5124 47 1 1.6679 0.5378 -1.9121 48 1 1.5228 0.2198 -3.6575 49 1 0.2678 -0.3650 -2.5390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456427344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:21 Heat of formation + Delta-G solvation = -81.526677 kcal Electronic energy + Delta-G solvation = -28526.705658 eV Core-core repulsion = 24838.939197 eV Total energy + Delta-G solvation = -3687.766461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.68244 -39.50293 -38.40584 -37.42485 -35.91909 -35.42664 -32.53142 -31.69227 -30.91201 -28.37849 -28.06699 -27.76390 -27.45508 -26.74124 -23.94127 -22.91684 -21.94245 -20.43095 -19.52739 -19.25592 -18.61450 -17.69948 -17.21815 -17.10062 -16.77484 -16.01344 -15.75038 -15.42535 -15.17193 -14.95286 -14.90308 -14.70568 -14.38085 -14.14961 -14.01963 -13.76413 -13.67687 -13.28844 -13.19558 -13.14499 -12.84898 -12.78347 -12.69304 -12.59065 -12.48432 -12.38722 -12.20775 -12.17054 -11.71277 -11.48010 -11.42148 -11.36190 -11.19484 -11.11972 -10.86309 -10.52991 -9.54667 -9.38565 -9.18872 -8.65588 -6.47221 0.52692 1.14013 1.39378 1.45041 1.51519 2.05398 2.18804 2.24169 2.79274 3.49115 3.64281 3.65280 3.90875 3.96721 4.06801 4.28238 4.29354 4.31907 4.38998 4.43815 4.50902 4.61847 4.66608 4.76631 4.78320 4.79551 4.89689 4.93257 4.95141 4.97676 5.04231 5.06674 5.10738 5.15767 5.21160 5.22018 5.28766 5.30093 5.44688 5.51341 5.59918 5.63772 5.75952 5.81736 6.02531 6.03988 6.25268 6.57315 6.60311 6.83678 6.91965 6.98511 7.40859 8.29916 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019347 B = 0.003451 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.871891 B = 8110.827100 C = 8689.267380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.591 5.591 3 C 0.577 3.423 4 O -0.595 6.595 5 C -0.268 4.268 6 C -0.058 4.058 7 C -0.184 4.184 8 C 0.103 3.897 9 C -0.489 4.489 10 H 0.086 0.914 11 C 0.032 3.968 12 N -0.826 5.826 13 Si 0.988 3.012 14 H -0.259 1.259 15 H -0.270 1.270 16 H -0.256 1.256 17 C -0.235 4.235 18 C -0.049 4.049 19 C 0.129 3.871 20 H 0.097 0.903 21 C 0.075 3.925 22 O -0.573 6.573 23 C -0.101 4.101 24 C -0.064 4.064 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.152 4.152 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.290 0.710 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.034 0.966 38 H 0.394 0.606 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.032 0.968 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -17.392 1.655 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.323 5.323 3 C 0.371 3.629 4 O -0.479 6.479 5 C -0.273 4.273 6 C -0.077 4.077 7 C -0.204 4.204 8 C 0.100 3.900 9 C -0.518 4.518 10 H 0.104 0.896 11 C -0.183 4.183 12 N -0.451 5.451 13 Si 0.809 3.191 14 H -0.184 1.184 15 H -0.195 1.195 16 H -0.180 1.180 17 C -0.255 4.255 18 C -0.068 4.068 19 C 0.027 3.973 20 H 0.115 0.885 21 C -0.004 4.004 22 O -0.381 6.381 23 C -0.139 4.139 24 C -0.064 4.064 25 C -0.206 4.206 26 C -0.190 4.190 27 C -0.209 4.209 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.243 0.757 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.051 0.949 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.132 -17.062 0.779 17.080 hybrid contribution -0.034 1.042 0.265 1.075 sum 0.098 -16.020 1.044 16.054 Atomic orbital electron populations 1.21942 0.78544 1.02462 1.01569 1.47660 1.07491 1.04457 1.72659 1.18339 0.86232 0.84276 0.74081 1.90610 1.15575 1.87982 1.53732 1.19231 1.02663 0.93611 1.11746 1.20498 0.97241 0.92808 0.97195 1.20909 0.97076 0.96859 1.05544 1.18112 0.89575 0.93247 0.89060 1.19979 1.29962 1.02364 0.99510 0.89600 1.26882 0.94233 1.03393 0.93809 1.69771 1.35583 1.37890 1.01856 0.85147 0.79463 0.75772 0.78744 1.18368 1.19452 1.17994 1.21040 1.02637 0.93019 1.08772 1.20991 0.92347 0.97665 0.95759 1.21484 0.97713 0.82862 0.95281 0.88532 1.22459 0.83854 0.98221 0.95861 1.86471 1.25113 1.80194 1.46314 1.21835 1.02398 0.98146 0.91532 1.20493 0.94900 0.94996 0.96057 1.22009 0.95670 1.01686 1.01244 1.21809 1.01707 0.98795 0.96709 1.22270 1.00088 0.98076 1.00490 0.92022 0.92952 0.89388 0.89373 0.88211 0.89966 0.86862 0.84764 0.90398 0.94743 0.75686 0.90333 0.89129 0.91179 0.93945 0.93344 0.92289 0.93330 0.91303 0.93089 0.94859 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.73 5.38 127.77 0.69 3.42 16 2 N -0.59 -18.54 1.33 -826.25 -1.10 -19.64 16 3 C 0.58 23.69 5.09 86.73 0.44 24.14 16 4 O -0.60 -27.53 14.90 -3.98 -0.06 -27.58 16 5 C -0.27 -12.22 5.20 -19.93 -0.10 -12.33 16 6 C -0.06 -2.95 9.54 22.25 0.21 -2.73 16 7 C -0.18 -9.94 8.57 22.47 0.19 -9.75 16 8 C 0.10 5.43 5.51 -21.28 -0.12 5.32 16 9 C -0.49 -25.42 9.04 23.46 0.21 -25.20 16 10 H 0.09 4.20 7.86 -2.92 -0.02 4.18 16 11 C 0.03 1.58 5.31 85.35 0.45 2.03 16 12 N -0.83 -42.79 10.94 21.87 0.24 -42.55 16 13 Si 0.99 37.07 29.56 68.60 2.03 39.10 16 14 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 15 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 16 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 17 C -0.24 -10.95 9.73 22.47 0.22 -10.73 16 18 C -0.05 -2.08 7.70 22.25 0.17 -1.91 16 19 C 0.13 3.30 2.20 44.99 0.10 3.40 16 20 H 0.10 2.86 4.85 -2.39 -0.01 2.85 16 21 C 0.07 1.44 6.84 71.98 0.49 1.94 16 22 O -0.57 -9.54 11.08 -148.98 -1.65 -11.19 16 23 C -0.10 -2.14 3.50 30.59 0.11 -2.04 16 24 C -0.06 -1.56 0.80 -52.18 -0.04 -1.60 16 25 C -0.15 -3.92 7.95 71.98 0.57 -3.35 16 26 C -0.13 -2.58 8.47 71.98 0.61 -1.97 16 27 C -0.15 -4.64 6.95 71.98 0.50 -4.14 16 28 H 0.06 1.63 6.36 -2.39 -0.02 1.61 16 29 H 0.05 1.72 6.40 -2.39 -0.02 1.70 16 30 H 0.09 2.12 5.40 -2.38 -0.01 2.11 16 31 H 0.09 4.46 7.99 -2.91 -0.02 4.44 16 32 H 0.10 5.66 6.45 -2.91 -0.02 5.64 16 33 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 35 H 0.13 4.70 5.21 -2.91 -0.02 4.69 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.39 3.17 9.12 -74.05 -0.68 2.49 16 39 H 0.08 1.67 5.79 -2.38 -0.01 1.66 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.05 1.57 4.85 -2.39 -0.01 1.56 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.87 3.77 -2.38 -0.01 1.86 16 48 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.06 1.60 7.10 -2.39 -0.02 1.58 16 Total: -1.00 -64.06 367.65 4.45 -59.60 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.29 Total: 37.77 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.71 Total: -35.51 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.86 Total: -62.19 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -1.71 Total: -38.77 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -64.06 4.45 -59.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456427344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.925 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds