Wall clock time and date at job start Tue Mar 31 2020 12:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47429 * 2 1 4 4 C 1.52994 * 109.47076 * 180.47724 * 3 2 1 5 5 O 1.42899 * 109.47221 * 299.96970 * 4 3 2 6 6 C 1.52999 * 109.47481 * 59.96920 * 4 3 2 7 7 C 1.53001 * 109.46893 * 58.63680 * 6 4 3 8 8 C 1.53006 * 109.47095 * 180.86664 * 7 6 4 9 9 C 1.53003 * 109.47168 * 179.97438 * 4 3 2 10 10 C 1.50691 * 109.47335 * 177.87389 * 9 4 3 11 11 O 1.21290 * 120.00281 * 353.38726 * 10 9 4 12 12 N 1.34780 * 120.00489 * 173.38838 * 10 9 4 13 13 C 1.39929 * 120.00637 * 184.79235 * 12 10 9 14 14 C 1.39291 * 119.94936 * 145.21874 * 13 12 10 15 15 C 1.38485 * 120.43103 * 180.02562 * 14 13 12 16 16 C 1.37679 * 120.32125 * 359.97438 * 15 14 13 17 17 C 1.40739 * 119.88840 * 0.02566 * 16 15 14 18 18 C 1.41405 * 120.21383 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99963 * 207.08263 * 18 17 16 20 20 C 1.39930 * 120.00057 * 27.08192 * 18 17 16 21 21 N 1.30830 * 119.99779 * 14.05995 * 20 18 17 22 22 Si 1.86792 * 120.00353 * 194.06501 * 20 18 17 23 23 H 1.48502 * 109.47427 * 94.97575 * 22 20 18 24 24 H 1.48501 * 109.47340 * 214.97991 * 22 20 18 25 25 H 1.48501 * 109.46983 * 334.97692 * 22 20 18 26 26 C 1.38244 * 119.94776 * 324.95227 * 13 12 10 27 27 H 1.08998 * 109.47172 * 59.99749 * 1 2 3 28 28 H 1.09005 * 109.47517 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47033 * 300.00111 * 1 2 3 30 30 H 1.09007 * 109.47088 * 239.99604 * 2 1 3 31 31 H 1.08998 * 109.47172 * 120.00251 * 2 1 3 32 32 H 1.09001 * 109.46535 * 60.47752 * 3 2 1 33 33 H 1.08994 * 109.46811 * 300.47760 * 3 2 1 34 34 H 0.96704 * 113.99962 * 300.00153 * 5 4 3 35 35 H 1.08994 * 109.47502 * 178.63876 * 6 4 3 36 36 H 1.09003 * 109.47003 * 298.64439 * 6 4 3 37 37 H 1.08995 * 109.47518 * 300.86729 * 7 6 4 38 38 H 1.09000 * 109.46776 * 60.86819 * 7 6 4 39 39 H 1.09002 * 109.47007 * 300.00034 * 8 7 6 40 40 H 1.09000 * 109.46939 * 59.99908 * 8 7 6 41 41 H 1.09004 * 109.47209 * 180.02562 * 8 7 6 42 42 H 1.09000 * 109.47080 * 297.87313 * 9 4 3 43 43 H 1.09003 * 109.46832 * 57.87123 * 9 4 3 44 44 H 0.97000 * 119.99170 * 4.79507 * 12 10 9 45 45 H 1.08005 * 119.78127 * 359.97438 * 14 13 12 46 46 H 1.08005 * 119.83888 * 180.02562 * 15 14 13 47 47 H 1.08004 * 120.05772 * 180.02562 * 16 15 14 48 48 H 0.97001 * 119.99894 * 179.97438 * 21 20 18 49 49 H 1.08003 * 120.16002 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0120 5 8 4.0554 0.7661 1.1495 6 6 4.0701 0.7239 -1.2668 7 6 3.5226 1.4280 -2.5100 8 6 4.0051 0.6967 -3.7643 9 6 4.0800 2.8849 -0.0127 10 6 5.5864 2.8851 0.0282 11 8 6.1892 1.8430 0.1761 12 7 6.2640 4.0431 -0.0995 13 6 7.6618 4.0328 -0.1623 14 6 8.3288 4.9581 -0.9616 15 6 9.7119 4.9565 -1.0316 16 6 10.4433 4.0395 -0.3106 17 6 9.7831 3.0984 0.5014 18 6 10.5275 2.1532 1.2444 19 1 10.0875 1.2009 1.5013 20 6 11.8340 2.4516 1.6467 21 7 12.2726 3.6826 1.5844 22 14 12.9521 1.0924 2.2725 23 1 13.7894 0.5864 1.1553 24 1 13.8287 1.6271 3.3453 25 1 12.1270 -0.0170 2.8145 26 6 8.3788 3.1077 0.5734 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6837 1.9538 0.8943 33 1 1.6697 1.9587 -0.8856 34 1 3.7766 1.1678 1.9838 35 1 5.1597 0.7450 -1.2876 36 1 3.7268 -0.3105 -1.2543 37 1 2.4330 1.4204 -2.4816 38 1 3.8784 2.4581 -2.5304 39 1 5.0948 0.7043 -3.7928 40 1 3.6494 -0.3334 -3.7438 41 1 3.6154 1.1985 -4.6501 42 1 3.7411 3.3897 -0.9173 43 1 3.6927 3.4076 0.8620 44 1 5.7825 4.8838 -0.1478 45 1 7.7636 5.6811 -1.5312 46 1 10.2194 5.6786 -1.6542 47 1 11.5218 4.0424 -0.3680 48 1 13.1782 3.8896 1.8636 49 1 7.8627 2.3928 1.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456753263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:12 Heat of formation + Delta-G solvation = -91.751646 kcal Electronic energy + Delta-G solvation = -27470.959119 eV Core-core repulsion = 23782.749270 eV Total energy + Delta-G solvation = -3688.209849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.23209 -38.52263 -36.88002 -34.70591 -34.34934 -33.76295 -32.96290 -31.12793 -29.75494 -28.69090 -26.99852 -26.48749 -25.22881 -22.67438 -22.29477 -21.28615 -20.75157 -19.58252 -19.15962 -17.67313 -16.83581 -16.07667 -15.97533 -15.81358 -15.49734 -14.92492 -14.58340 -14.53915 -14.08276 -14.04239 -13.63421 -13.39879 -13.23370 -12.98283 -12.77993 -12.30347 -12.15732 -12.00406 -11.83840 -11.74873 -11.69346 -11.56112 -11.33803 -11.10083 -11.09089 -11.02948 -10.87254 -10.84972 -10.42281 -10.38404 -10.33285 -10.08905 -9.83102 -9.54638 -9.27045 -8.99959 -8.70285 -7.37938 -6.86083 -6.63534 -4.28824 2.69801 2.90288 3.13334 3.19096 3.24080 3.40350 3.67015 4.01898 4.23134 4.57773 4.68372 4.72128 4.73322 4.92973 5.00380 5.05650 5.20932 5.26653 5.33846 5.35431 5.44248 5.46920 5.57916 5.64768 5.77307 5.80814 5.82912 5.85965 5.91404 5.94808 6.09552 6.18085 6.23063 6.28728 6.32623 6.43571 6.58308 6.86594 7.08888 7.11860 7.16080 7.32123 7.63930 7.80369 7.83984 8.02645 8.17696 8.25521 8.34412 8.71651 8.84570 9.01265 9.04756 10.29251 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.003088 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.047834 B = 9065.072858 C = 9739.833885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.146 4.146 4 C 0.155 3.845 5 O -0.535 6.535 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.151 4.151 9 C -0.173 4.173 10 C 0.501 3.499 11 O -0.491 6.491 12 N -0.674 5.674 13 C 0.149 3.851 14 C -0.262 4.262 15 C -0.095 4.095 16 C -0.171 4.171 17 C 0.118 3.882 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.801 5.801 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.207 4.207 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.366 0.634 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.395 0.605 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.119 0.881 48 H 0.278 0.722 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.514 -1.115 -4.304 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.184 4.184 4 C 0.114 3.886 5 O -0.338 6.338 6 C -0.154 4.154 7 C -0.162 4.162 8 C -0.209 4.209 9 C -0.214 4.214 10 C 0.287 3.713 11 O -0.363 6.363 12 N -0.318 5.318 13 C 0.057 3.943 14 C -0.283 4.283 15 C -0.114 4.114 16 C -0.190 4.190 17 C 0.115 3.885 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.185 1.185 26 C -0.228 4.228 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.212 0.788 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.228 0.772 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.136 0.864 48 H 0.089 0.911 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.636 -2.163 -4.597 19.316 hybrid contribution -0.003 0.608 0.697 0.925 sum -18.639 -1.555 -3.900 19.106 Atomic orbital electron populations 1.21792 0.96287 1.01438 1.01436 1.21483 0.94953 0.96433 1.03020 1.22354 0.95629 0.97987 1.02443 1.20828 0.90879 0.89065 0.87849 1.86734 1.76818 1.55608 1.14664 1.21695 1.03775 0.99198 0.90714 1.21641 1.00298 0.99680 0.94548 1.21746 1.01857 1.00209 0.97069 1.22542 0.94111 1.00222 1.04475 1.20384 0.89255 0.84006 0.77646 1.90771 1.69437 1.31006 1.45120 1.43515 1.06354 1.08699 1.73270 1.17460 0.79981 0.98973 0.97860 1.20052 0.94423 1.05554 1.08291 1.20458 0.92958 0.98574 0.99389 1.21357 0.99801 0.98756 0.99121 1.17536 0.90434 0.91226 0.89310 1.19599 0.97043 1.02126 1.30011 0.90376 1.25888 0.98382 0.95943 0.94024 1.69822 1.17545 1.18778 1.36546 0.86284 0.79833 0.81632 0.78877 1.19430 1.20373 1.18544 1.21187 0.93945 1.03169 1.04517 0.93012 0.92896 0.93010 0.91581 0.91291 0.91951 0.90871 0.78836 0.88928 0.91291 0.91955 0.92089 0.92369 0.92836 0.92919 0.88493 0.89140 0.77199 0.89482 0.89174 0.86364 0.91092 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.15 0.37 -0.74 16 2 C -0.12 -1.07 5.44 -26.73 -0.15 -1.22 16 3 C -0.15 -1.26 4.07 -26.73 -0.11 -1.36 16 4 C 0.16 1.80 0.44 -90.62 -0.04 1.76 16 5 O -0.53 -7.42 10.91 -55.72 -0.61 -8.03 16 6 C -0.12 -1.52 3.97 -26.73 -0.11 -1.62 16 7 C -0.12 -1.30 5.23 -26.73 -0.14 -1.44 16 8 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 9 C -0.17 -1.97 4.68 -27.89 -0.13 -2.10 16 10 C 0.50 8.57 7.14 -10.99 -0.08 8.50 16 11 O -0.49 -10.64 10.62 -14.95 -0.16 -10.80 16 12 N -0.67 -11.87 5.33 -9.91 -0.05 -11.92 16 13 C 0.15 3.40 6.30 -83.77 -0.53 2.87 16 14 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 15 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 16 C -0.17 -4.57 8.67 -38.84 -0.34 -4.90 16 17 C 0.12 3.30 5.56 -106.85 -0.59 2.71 16 18 C -0.46 -12.85 9.06 -37.74 -0.34 -13.20 16 19 H 0.08 2.18 7.88 -52.49 -0.41 1.77 16 20 C 0.07 1.94 5.20 -17.34 -0.09 1.85 16 21 N -0.80 -21.32 10.91 55.55 0.61 -20.71 16 22 Si 0.91 19.60 29.58 -169.99 -5.03 14.57 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.21 -5.44 8.44 -38.68 -0.33 -5.77 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 31 H 0.07 0.68 7.70 -51.93 -0.40 0.28 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.56 6.38 -51.93 -0.33 0.23 16 34 H 0.37 3.81 9.05 45.56 0.41 4.22 16 35 H 0.09 1.59 5.91 -51.93 -0.31 1.29 16 36 H 0.07 0.89 6.49 -51.93 -0.34 0.55 16 37 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 38 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.91 6.37 -51.93 -0.33 0.58 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.39 5.39 8.82 -40.82 -0.36 5.03 16 45 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 46 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 47 H 0.12 3.25 6.21 -52.48 -0.33 2.93 16 48 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 49 H 0.11 3.09 6.20 -52.48 -0.33 2.77 16 LS Contribution 382.47 15.07 5.76 5.76 Total: -1.00 -32.03 382.47 -9.57 -41.60 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.08 Total: 14.27 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -3.02 Total: -24.76 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.55 Total: -32.63 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.77 Total: -18.82 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.03 -9.57 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456753263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.147 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds