Wall clock time and date at job start Tue Mar 31 2020 12:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99636 * 2 1 4 4 C 1.53004 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47327 * 64.99768 * 4 3 2 6 6 C 1.37092 * 120.00220 * 270.00528 * 5 4 3 7 7 H 1.07995 * 120.00330 * 143.61087 * 6 5 4 8 8 C 1.38953 * 119.99497 * 323.60222 * 6 5 4 9 9 N 1.31412 * 119.99770 * 159.35468 * 8 6 5 10 10 Si 1.86797 * 120.00443 * 339.35442 * 8 6 5 11 11 H 1.48505 * 109.47088 * 95.14579 * 10 8 6 12 12 H 1.48498 * 109.47149 * 215.14527 * 10 8 6 13 13 H 1.48495 * 109.46874 * 335.14951 * 10 8 6 14 14 C 1.34781 * 119.99589 * 90.00008 * 5 4 3 15 15 O 1.21295 * 120.00231 * 5.23395 * 14 5 4 16 16 C 1.50697 * 119.99628 * 185.23241 * 14 5 4 17 17 C 1.53007 * 109.46897 * 185.08902 * 16 14 5 18 18 C 1.53006 * 109.46711 * 174.73833 * 17 16 14 19 19 C 1.52998 * 109.47247 * 58.80578 * 18 17 16 20 20 C 1.53003 * 109.47176 * 298.80107 * 18 17 16 21 21 C 1.50699 * 109.46612 * 178.80451 * 18 17 16 22 22 C 1.38242 * 119.99929 * 179.97438 * 21 18 17 23 23 C 1.38233 * 119.99858 * 179.97438 * 22 21 18 24 24 C 1.38229 * 120.00144 * 359.95945 * 23 22 21 25 25 C 1.38237 * 120.00066 * 0.27820 * 24 23 22 26 26 C 1.38226 * 119.99816 * 359.50519 * 25 24 23 27 27 H 1.08993 * 109.47434 * 60.00317 * 1 2 3 28 28 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47103 * 299.99283 * 1 2 3 30 30 H 1.09000 * 109.47386 * 60.00284 * 3 2 1 31 31 H 1.09001 * 109.47424 * 300.00037 * 3 2 1 32 32 H 1.08997 * 109.46987 * 304.99538 * 4 3 2 33 33 H 1.09007 * 109.47220 * 185.00208 * 4 3 2 34 34 H 0.96998 * 120.00436 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47483 * 65.09353 * 16 14 5 36 36 H 1.08999 * 109.47196 * 305.08663 * 16 14 5 37 37 H 1.08995 * 109.46898 * 54.74458 * 17 16 14 38 38 H 1.08989 * 109.47220 * 294.73779 * 17 16 14 39 39 H 1.09000 * 109.46985 * 176.82111 * 19 18 17 40 40 H 1.08997 * 109.46890 * 296.82420 * 19 18 17 41 41 H 1.09004 * 109.47074 * 56.82255 * 19 18 17 42 42 H 1.08994 * 109.47086 * 305.73912 * 20 18 17 43 43 H 1.08997 * 109.46687 * 65.74108 * 20 18 17 44 44 H 1.08997 * 109.46630 * 185.73831 * 20 18 17 45 45 H 1.07997 * 119.99765 * 359.97438 * 22 21 18 46 46 H 1.08001 * 119.99558 * 179.97438 * 23 22 21 47 47 H 1.07998 * 120.00076 * 179.97438 * 24 23 22 48 48 H 1.08002 * 119.99936 * 179.72963 * 25 24 23 49 49 H 1.08006 * 120.00272 * 180.25128 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0969 -0.7985 -1.3370 7 1 3.8398 -1.3078 -2.2539 8 6 4.5508 -1.5245 -0.2426 9 7 4.2957 -2.8107 -0.1558 10 14 5.5236 -0.6723 1.1053 11 1 4.6053 -0.2744 2.2025 12 1 6.5542 -1.6012 1.6347 13 1 6.1845 0.5361 0.5502 14 6 4.2615 1.3339 -2.3218 15 8 4.2462 2.5425 -2.2207 16 6 4.5999 0.6925 -3.6428 17 6 5.0038 1.7744 -4.6464 18 6 5.4727 1.1156 -5.9453 19 6 4.3455 0.2521 -6.5150 20 6 6.6933 0.2381 -5.6604 21 6 5.8427 2.1817 -6.9441 22 6 6.2981 1.8246 -8.1995 23 6 6.6369 2.8025 -9.1158 24 6 6.5196 4.1375 -8.7772 25 6 6.0688 4.4947 -7.5201 26 6 5.7257 3.5168 -6.6053 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5684 0.8410 33 1 3.9785 2.1767 0.0890 34 1 4.6128 -3.3176 0.6079 35 1 3.7298 0.1545 -4.0191 36 1 5.4272 -0.0042 -3.5070 37 1 5.8139 2.3726 -4.2294 38 1 4.1474 2.4162 -4.8531 39 1 4.6594 -0.1721 -7.4688 40 1 4.1164 -0.5531 -5.8170 41 1 3.4577 0.8664 -6.6652 42 1 7.4590 0.8318 -5.1611 43 1 6.4014 -0.5927 -5.0181 44 1 7.0888 -0.1498 -6.5990 45 1 6.3892 0.7816 -8.4643 46 1 6.9932 2.5235 -10.0965 47 1 6.7847 4.9016 -9.4929 48 1 5.9812 5.5377 -7.2540 49 1 5.3697 3.7958 -5.6246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200099.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:58 Heat of formation + Delta-G solvation = -55.389624 kcal Electronic energy + Delta-G solvation = -27692.228013 eV Core-core repulsion = 24005.594940 eV Total energy + Delta-G solvation = -3686.633073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.90990 -38.87400 -37.16065 -36.38931 -34.74104 -31.91868 -31.33643 -30.79921 -29.59598 -28.70605 -27.06840 -25.89520 -25.16330 -24.32065 -22.76930 -22.29118 -21.43943 -19.02814 -18.49193 -17.28225 -16.62360 -16.34690 -15.81193 -15.44897 -14.97847 -14.84572 -14.78797 -14.60651 -14.33592 -14.08877 -13.69406 -13.41833 -13.41081 -13.12642 -12.97282 -12.45954 -12.43177 -12.13896 -12.01751 -11.79713 -11.67023 -11.52051 -11.34096 -11.22770 -11.08592 -10.86146 -10.83852 -10.73523 -10.29041 -10.19011 -10.12034 -9.99129 -9.81971 -9.11621 -9.05022 -8.84957 -8.60172 -8.48771 -7.75301 -6.36154 -3.92335 1.43622 1.46840 3.10206 3.26007 3.32237 3.76506 3.85770 4.20054 4.32935 4.48259 4.75890 4.85490 5.02287 5.09492 5.17427 5.23582 5.25232 5.44807 5.55719 5.61166 5.62756 5.67892 5.79455 5.81321 5.85141 5.88054 5.89289 5.97391 5.98486 6.03691 6.06813 6.12492 6.17353 6.19184 6.25056 6.32379 6.36169 6.40933 6.44606 6.53146 6.56558 6.65645 6.74789 6.78830 6.86922 7.08595 7.41135 7.82471 8.16806 8.32614 9.05028 9.44283 9.75126 10.75286 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016945 B = 0.003365 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.048173 B = 8318.724081 C = 8779.781675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.099 3.901 5 N -0.457 5.457 6 C -0.328 4.328 7 H 0.103 0.897 8 C 0.074 3.926 9 N -0.859 5.859 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.290 1.290 13 H -0.264 1.264 14 C 0.477 3.523 15 O -0.607 6.607 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.028 4.028 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.059 4.059 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.272 0.728 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.119 0.881 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.118 0.882 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 7.453 -11.163 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.177 5.177 6 C -0.455 4.455 7 H 0.120 0.880 8 C -0.133 4.133 9 N -0.494 5.494 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.188 1.188 14 C 0.267 3.733 15 O -0.494 6.494 16 C -0.159 4.159 17 C -0.129 4.129 18 C -0.028 4.028 19 C -0.197 4.197 20 C -0.198 4.198 21 C -0.059 4.059 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.133 0.867 48 H 0.136 0.864 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.716 7.659 -10.994 13.418 hybrid contribution 0.151 0.426 0.892 1.000 sum 0.867 8.085 -10.101 12.967 Atomic orbital electron populations 1.22655 0.83134 1.02085 0.98647 1.88244 1.17573 1.26459 1.94973 1.22869 0.95015 0.85270 0.99079 1.21709 0.92142 0.99012 0.89560 1.43684 1.57700 1.07133 1.09201 1.18925 1.44937 0.79002 1.02643 0.87958 1.25176 0.95829 0.95039 0.97256 1.69755 1.41589 1.07690 1.30396 0.87039 0.80382 0.80103 0.82380 1.20292 1.21744 1.18825 1.20504 0.79411 0.86519 0.86841 1.90514 1.58170 1.14764 1.85909 1.21468 1.03235 0.98675 0.92569 1.21477 1.01364 0.97425 0.92611 1.19581 0.96001 0.93559 0.93671 1.21939 0.97498 0.99624 1.00607 1.21954 0.96724 0.99696 1.01414 1.19952 0.97319 0.94225 0.94432 1.20997 0.99850 0.99298 0.93451 1.21072 1.00711 0.93126 0.99264 1.21080 1.01110 0.96122 0.96778 1.21160 0.99489 0.99313 0.93897 1.21380 0.99612 0.92439 1.00231 0.94957 0.90078 0.95273 0.94042 0.93527 0.91045 0.89735 0.91789 0.89920 0.88857 0.91381 0.91678 0.92955 0.91330 0.92705 0.92552 0.91177 0.92973 0.86265 0.86545 0.86652 0.86389 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.67 10.18 -35.23 -0.36 -8.03 16 3 C 0.06 1.12 6.28 37.16 0.23 1.35 16 4 C 0.10 2.23 4.67 -4.04 -0.02 2.21 16 5 N -0.46 -10.98 2.19 -114.81 -0.25 -11.23 16 6 C -0.33 -8.47 8.53 -14.93 -0.13 -8.60 16 7 H 0.10 2.75 7.34 -52.49 -0.39 2.36 16 8 C 0.07 1.96 5.34 -17.47 -0.09 1.87 16 9 N -0.86 -23.86 13.96 55.50 0.77 -23.09 16 10 Si 0.87 20.80 24.87 -169.99 -4.23 16.57 16 11 H -0.28 -6.40 6.69 56.52 0.38 -6.03 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.26 -6.34 7.11 56.52 0.40 -5.93 16 14 C 0.48 10.85 7.62 -10.99 -0.08 10.76 16 15 O -0.61 -14.69 15.53 5.54 0.09 -14.61 16 16 C -0.12 -2.24 3.57 -27.88 -0.10 -2.34 16 17 C -0.09 -1.47 2.24 -26.72 -0.06 -1.53 16 18 C -0.03 -0.38 0.63 -155.66 -0.10 -0.48 16 19 C -0.14 -1.77 7.86 37.16 0.29 -1.48 16 20 C -0.14 -1.84 7.89 37.16 0.29 -1.55 16 21 C -0.06 -0.78 4.76 -104.62 -0.50 -1.28 16 22 C -0.12 -1.39 8.61 -39.58 -0.34 -1.73 16 23 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 24 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 25 C -0.12 -1.42 10.05 -39.59 -0.40 -1.81 16 26 C -0.12 -1.58 8.98 -39.59 -0.36 -1.94 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.68 2.97 -51.93 -0.15 1.52 16 33 H 0.08 1.82 7.36 -51.92 -0.38 1.44 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 1.51 6.66 -51.93 -0.35 1.16 16 36 H 0.09 1.76 6.05 -51.93 -0.31 1.44 16 37 H 0.07 1.17 7.47 -51.93 -0.39 0.79 16 38 H 0.06 1.08 7.43 -51.94 -0.39 0.70 16 39 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 40 H 0.07 0.90 6.71 -51.93 -0.35 0.55 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.96 6.65 -51.93 -0.35 0.61 16 44 H 0.05 0.60 7.20 -51.93 -0.37 0.22 16 45 H 0.12 1.23 7.05 -52.49 -0.37 0.86 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.13 1.82 5.90 -52.48 -0.31 1.51 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -30.11 381.29 -7.14 -37.24 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.87 Total: 5.86 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.04 Total: -8.46 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.52 Total: -34.31 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.27 Total: -22.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.23 Total: 16.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.11 -7.14 -37.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200099.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.149 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds