Wall clock time and date at job start Tue Mar 31 2020 12:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50704 * 119.99622 * 2 1 4 4 C 1.30996 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.50696 * 120.00152 * 7.15845 * 4 2 1 6 6 C 1.52998 * 109.47319 * 129.05080 * 5 4 2 7 7 N 1.46903 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99835 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47016 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46819 * 304.99749 * 9 8 7 11 11 O 1.42898 * 109.47621 * 65.00021 * 9 8 7 12 12 C 1.53003 * 109.46893 * 184.99914 * 9 8 7 13 13 O 1.42906 * 109.46895 * 174.99776 * 12 9 8 14 14 C 1.35674 * 117.00032 * 180.02562 * 13 12 9 15 15 C 1.39316 * 119.81311 * 359.72236 * 14 13 12 16 16 C 1.36445 * 120.18369 * 179.76114 * 15 14 13 17 17 C 1.40837 * 119.80659 * 0.51888 * 16 15 14 18 18 C 1.41220 * 120.17717 * 179.71967 * 17 16 15 19 19 H 1.08000 * 119.99985 * 34.21428 * 18 17 16 20 20 C 1.39892 * 119.99731 * 214.21540 * 18 17 16 21 21 N 1.30878 * 120.00211 * 17.60955 * 20 18 17 22 22 Si 1.86799 * 119.99749 * 197.60767 * 20 18 17 23 23 H 1.48501 * 109.47166 * 59.99936 * 22 20 18 24 24 H 1.48498 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47097 * 300.00098 * 22 20 18 26 26 C 1.40831 * 119.64536 * 359.73493 * 17 16 15 27 27 C 1.36435 * 119.81122 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.46828 * 185.82569 * 1 2 3 29 29 H 1.08999 * 109.46963 * 305.82288 * 1 2 3 30 30 H 1.08995 * 109.46822 * 65.82430 * 1 2 3 31 31 H 1.09004 * 109.46789 * 270.00198 * 3 2 1 32 32 H 1.08996 * 109.47066 * 29.99507 * 3 2 1 33 33 H 1.08996 * 109.47259 * 150.00099 * 3 2 1 34 34 H 1.07999 * 119.99482 * 187.15412 * 4 2 1 35 35 H 1.08997 * 109.47343 * 9.04886 * 5 4 2 36 36 H 1.09005 * 109.47171 * 249.05422 * 5 4 2 37 37 H 1.09005 * 109.47070 * 60.00308 * 6 5 4 38 38 H 1.08995 * 109.47066 * 299.99799 * 6 5 4 39 39 H 1.00898 * 111.00190 * 303.95205 * 7 6 5 40 40 H 1.08998 * 109.47198 * 60.00284 * 8 7 6 41 41 H 1.08996 * 109.46970 * 300.00372 * 8 7 6 42 42 H 0.96700 * 113.99942 * 59.99673 * 11 9 8 43 43 H 1.09005 * 109.47038 * 55.00305 * 12 9 8 44 44 H 1.08990 * 109.47729 * 294.99818 * 12 9 8 45 45 H 1.08002 * 119.91125 * 0.02562 * 15 14 13 46 46 H 1.07994 * 120.09847 * 180.25334 * 16 15 14 47 47 H 0.96997 * 120.00344 * 180.02562 * 21 20 18 48 48 H 1.07997 * 120.09701 * 179.97438 * 26 17 16 49 49 H 1.08006 * 119.91147 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4175 -2.4345 -0.1615 6 6 2.0703 -3.2613 -1.2711 7 7 1.3447 -4.5289 -1.4285 8 6 1.9453 -5.3512 -2.4875 9 6 1.1639 -6.6597 -2.6220 10 1 1.1229 -7.1595 -1.6542 11 8 -0.1637 -6.3780 -3.0693 12 6 1.8616 -7.5683 -3.6362 13 8 1.1995 -8.8341 -3.6762 14 6 1.6972 -9.7628 -4.5310 15 6 2.8022 -9.4549 -5.3216 16 6 3.3119 -10.3848 -6.1803 17 6 2.7109 -11.6550 -6.2738 18 6 3.2283 -12.6213 -7.1642 19 1 4.2911 -12.6701 -7.3501 20 6 2.3643 -13.5153 -7.8054 21 7 1.0825 -13.2579 -7.8647 22 14 3.0401 -15.0766 -8.5769 23 1 3.6979 -15.9008 -7.5313 24 1 1.9282 -15.8482 -9.1879 25 1 4.0315 -14.7221 -9.6242 26 6 1.5909 -11.9563 -5.4749 27 6 1.0967 -11.0169 -4.6178 28 1 -0.3633 -1.0223 0.1043 29 1 -0.3633 0.6015 0.8333 30 1 -0.3633 0.4209 -0.9375 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5137 33 1 3.2129 1.1749 0.5138 34 1 3.2358 -1.1379 0.1170 35 1 0.3799 -2.2287 -0.4244 36 1 1.4513 -2.9918 0.7747 37 1 3.1079 -3.4673 -1.0081 38 1 2.0364 -2.7042 -2.2072 39 1 1.3068 -5.0347 -0.5563 40 1 2.9820 -5.5712 -2.2327 41 1 1.9106 -4.8088 -3.4323 42 1 -0.2037 -5.9323 -3.9266 43 1 2.9012 -7.7113 -3.3411 44 1 1.8242 -7.1074 -4.6232 45 1 3.2593 -8.4789 -5.2516 46 1 4.1710 -10.1460 -6.7895 47 1 0.4833 -13.8780 -8.3090 48 1 1.1241 -12.9279 -5.5410 49 1 0.2376 -11.2461 -4.0046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563003287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:41 Heat of formation + Delta-G solvation = -67.442989 kcal Electronic energy + Delta-G solvation = -25040.239363 eV Core-core repulsion = 21353.083617 eV Total energy + Delta-G solvation = -3687.155746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.14513 -38.12245 -37.39716 -36.18203 -35.31390 -33.24569 -31.83630 -30.19769 -29.44644 -28.91530 -28.18703 -26.49310 -24.87356 -24.04566 -22.25845 -21.85984 -20.68567 -20.57805 -18.23755 -17.32193 -17.25557 -16.78301 -16.16094 -15.91564 -15.37070 -15.16157 -14.90410 -14.74665 -14.41048 -14.06255 -14.00337 -13.89476 -13.78415 -13.24266 -12.83047 -12.74469 -12.52952 -12.29257 -12.23307 -12.14841 -11.91762 -11.81741 -11.80946 -11.50840 -11.39959 -11.12506 -11.01003 -10.90467 -10.79304 -10.64316 -9.96305 -9.88956 -9.77770 -9.33808 -9.03324 -9.02737 -8.68473 -7.67890 -6.96048 -6.67493 -4.26125 1.79089 2.80203 2.90534 3.10844 3.13266 3.21115 3.52382 3.99772 4.16306 4.44614 4.52395 4.60424 4.65318 4.75352 4.81063 4.96280 4.99972 5.01248 5.14613 5.17138 5.24132 5.28552 5.30491 5.38761 5.43967 5.48709 5.50975 5.58322 5.61955 5.66226 5.72114 5.79975 6.01373 6.03066 6.19701 6.35724 6.56208 6.66375 6.70807 6.94224 7.06399 7.06755 7.21268 7.39268 7.54764 7.74229 7.76968 8.01296 8.16524 8.43190 8.64172 8.91636 8.98076 10.30403 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.045053 B = 0.001560 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.343809 B =17940.546763 C =18253.790784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.132 4.132 3 C -0.117 4.117 4 C -0.165 4.165 5 C -0.096 4.096 6 C 0.065 3.935 7 N -0.681 5.681 8 C 0.031 3.969 9 C 0.115 3.885 10 H 0.103 0.897 11 O -0.540 6.540 12 C 0.038 3.962 13 O -0.317 6.317 14 C -0.001 4.001 15 C -0.172 4.172 16 C -0.189 4.189 17 C 0.094 3.906 18 C -0.477 4.477 19 H 0.076 0.924 20 C 0.079 3.921 21 N -0.805 5.805 22 Si 0.904 3.096 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.125 4.125 27 C -0.120 4.120 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.342 0.658 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.371 0.629 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.280 0.720 48 H 0.113 0.887 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 21.801 12.972 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.132 4.132 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.133 4.133 6 C -0.065 4.065 7 N -0.312 5.312 8 C -0.099 4.099 9 C 0.055 3.945 10 H 0.121 0.879 11 O -0.345 6.345 12 C -0.040 4.040 13 O -0.232 6.232 14 C -0.044 4.044 15 C -0.191 4.191 16 C -0.209 4.209 17 C 0.092 3.908 18 C -0.508 4.508 19 H 0.094 0.906 20 C -0.138 4.138 21 N -0.431 5.431 22 Si 0.729 3.271 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.144 4.144 27 C -0.139 4.139 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.218 0.782 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.131 0.869 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.147 21.671 13.139 25.343 hybrid contribution 1.640 -0.609 -0.740 1.899 sum 1.787 21.061 12.399 24.505 Atomic orbital electron populations 1.21039 0.92331 1.03225 1.01972 1.21621 0.95971 0.95007 1.00640 1.20813 0.99526 0.95041 1.02037 1.22571 0.99385 0.93705 1.02710 1.20787 1.00456 0.93762 0.98314 1.21894 0.94766 0.90594 0.99198 1.60333 1.54809 1.05626 1.10388 1.22570 0.96276 0.94410 0.96639 1.21835 0.82951 0.91674 0.98023 0.87912 1.86630 1.25671 1.81343 1.40811 1.23132 0.96381 0.85387 0.99068 1.85893 1.55318 1.21460 1.60539 1.18637 0.98088 0.90263 0.97445 1.20437 0.98500 0.99066 1.01052 1.20664 1.03539 0.93898 1.02768 1.17564 0.91333 0.91027 0.90864 1.19328 0.94790 1.13490 1.23181 0.90612 1.25792 0.94471 0.98473 0.95039 1.69817 1.04177 1.34703 1.34440 0.86439 0.79322 0.81627 0.79689 1.18963 1.20469 1.19194 1.20787 0.99457 0.98305 0.95852 1.19819 1.00499 0.91705 1.01901 0.90713 0.91743 0.91729 0.91450 0.92075 0.92035 0.87532 0.89534 0.91418 0.95378 0.90966 0.83967 0.94077 0.90330 0.78196 0.92544 0.92796 0.88864 0.88614 0.90955 0.86858 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.81 9.78 36.01 0.35 -0.46 16 2 C -0.13 -0.91 6.05 -101.06 -0.61 -1.52 16 3 C -0.12 -0.66 10.04 36.01 0.36 -0.29 16 4 C -0.17 -1.18 9.11 -36.03 -0.33 -1.51 16 5 C -0.10 -0.70 5.54 -27.89 -0.15 -0.86 16 6 C 0.06 0.52 5.67 -3.82 -0.02 0.49 16 7 N -0.68 -6.29 6.45 -113.78 -0.73 -7.02 16 8 C 0.03 0.30 5.32 -3.82 -0.02 0.28 16 9 C 0.12 1.43 3.43 -26.73 -0.09 1.34 16 10 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 11 O -0.54 -7.54 13.25 -40.09 -0.53 -8.07 16 12 C 0.04 0.57 4.37 37.16 0.16 0.73 16 13 O -0.32 -6.46 10.09 -23.58 -0.24 -6.70 16 14 C 0.00 -0.03 6.71 -38.78 -0.26 -0.29 16 15 C -0.17 -3.85 8.96 -39.83 -0.36 -4.21 16 16 C -0.19 -4.64 9.75 -39.25 -0.38 -5.02 16 17 C 0.09 2.52 5.44 -106.80 -0.58 1.94 16 18 C -0.48 -12.77 8.99 -37.83 -0.34 -13.11 16 19 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 20 C 0.08 2.01 5.07 -17.34 -0.09 1.92 16 21 N -0.80 -21.31 11.64 55.54 0.65 -20.66 16 22 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.12 -3.26 8.61 -39.25 -0.34 -3.59 16 27 C -0.12 -2.93 9.92 -39.83 -0.40 -3.32 16 28 H 0.07 0.48 5.27 -51.93 -0.27 0.21 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.06 0.32 8.04 -51.93 -0.42 -0.10 16 34 H 0.11 0.71 8.01 -52.49 -0.42 0.29 16 35 H 0.09 0.68 5.33 -51.93 -0.28 0.40 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.34 2.96 8.73 -39.29 -0.34 2.62 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.37 4.05 9.05 45.56 0.41 4.47 16 43 H 0.06 0.80 7.66 -51.93 -0.40 0.41 16 44 H 0.05 0.78 7.63 -51.93 -0.40 0.39 16 45 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 46 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 48 H 0.11 3.01 6.89 -52.49 -0.36 2.65 16 49 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -29.92 401.67 -10.35 -40.27 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.43 Total: 9.70 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -3.09 Total: -27.49 kcal Atomic # 7 Polarization: -27.59 SS G_CDS: -0.09 Total: -27.68 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.77 Total: -14.77 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.92 -10.35 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563003287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.173 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds