Wall clock time and date at job start Tue Mar 31 2020 12:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50704 * 119.99622 * 2 1 4 4 C 1.30996 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.50696 * 120.00152 * 7.15845 * 4 2 1 6 6 C 1.52998 * 109.47319 * 129.05080 * 5 4 2 7 7 N 1.46903 * 109.46969 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99835 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47016 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46819 * 304.99749 * 9 8 7 11 11 O 1.42898 * 109.47621 * 65.00021 * 9 8 7 12 12 C 1.53003 * 109.46893 * 184.99914 * 9 8 7 13 13 O 1.42906 * 109.46895 * 174.99776 * 12 9 8 14 14 C 1.35674 * 117.00032 * 180.02562 * 13 12 9 15 15 C 1.39316 * 119.81311 * 359.72236 * 14 13 12 16 16 C 1.36445 * 120.18369 * 179.76114 * 15 14 13 17 17 C 1.40837 * 119.80659 * 0.51888 * 16 15 14 18 18 C 1.41220 * 120.17717 * 179.71967 * 17 16 15 19 19 H 1.08000 * 119.99985 * 34.21428 * 18 17 16 20 20 C 1.39892 * 119.99731 * 214.21540 * 18 17 16 21 21 N 1.30878 * 120.00211 * 17.60955 * 20 18 17 22 22 Si 1.86799 * 119.99749 * 197.60767 * 20 18 17 23 23 H 1.48501 * 109.47166 * 59.99936 * 22 20 18 24 24 H 1.48498 * 109.47033 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47097 * 300.00098 * 22 20 18 26 26 C 1.40831 * 119.64536 * 359.73493 * 17 16 15 27 27 C 1.36435 * 119.81122 * 0.02562 * 26 17 16 28 28 H 1.08997 * 109.46828 * 185.82569 * 1 2 3 29 29 H 1.08999 * 109.46963 * 305.82288 * 1 2 3 30 30 H 1.08995 * 109.46822 * 65.82430 * 1 2 3 31 31 H 1.09004 * 109.46789 * 270.00198 * 3 2 1 32 32 H 1.08996 * 109.47066 * 29.99507 * 3 2 1 33 33 H 1.08996 * 109.47259 * 150.00099 * 3 2 1 34 34 H 1.07999 * 119.99482 * 187.15412 * 4 2 1 35 35 H 1.08997 * 109.47343 * 9.04886 * 5 4 2 36 36 H 1.09005 * 109.47171 * 249.05422 * 5 4 2 37 37 H 1.09005 * 109.47070 * 60.00308 * 6 5 4 38 38 H 1.08995 * 109.47066 * 299.99799 * 6 5 4 39 39 H 1.00898 * 111.00190 * 303.95205 * 7 6 5 40 40 H 1.08998 * 109.47198 * 60.00284 * 8 7 6 41 41 H 1.08996 * 109.46970 * 300.00372 * 8 7 6 42 42 H 0.96700 * 113.99942 * 59.99673 * 11 9 8 43 43 H 1.09005 * 109.47038 * 55.00305 * 12 9 8 44 44 H 1.08990 * 109.47729 * 294.99818 * 12 9 8 45 45 H 1.08002 * 119.91125 * 0.02562 * 15 14 13 46 46 H 1.07994 * 120.09847 * 180.25334 * 16 15 14 47 47 H 0.96997 * 120.00344 * 180.02562 * 21 20 18 48 48 H 1.07997 * 120.09701 * 179.97438 * 26 17 16 49 49 H 1.08006 * 119.91147 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4175 -2.4345 -0.1615 6 6 2.0703 -3.2613 -1.2711 7 7 1.3447 -4.5289 -1.4285 8 6 1.9453 -5.3512 -2.4875 9 6 1.1639 -6.6597 -2.6220 10 1 1.1229 -7.1595 -1.6542 11 8 -0.1637 -6.3780 -3.0693 12 6 1.8616 -7.5683 -3.6362 13 8 1.1995 -8.8341 -3.6762 14 6 1.6972 -9.7628 -4.5310 15 6 2.8022 -9.4549 -5.3216 16 6 3.3119 -10.3848 -6.1803 17 6 2.7109 -11.6550 -6.2738 18 6 3.2283 -12.6213 -7.1642 19 1 4.2911 -12.6701 -7.3501 20 6 2.3643 -13.5153 -7.8054 21 7 1.0825 -13.2579 -7.8647 22 14 3.0401 -15.0766 -8.5769 23 1 3.6979 -15.9008 -7.5313 24 1 1.9282 -15.8482 -9.1879 25 1 4.0315 -14.7221 -9.6242 26 6 1.5909 -11.9563 -5.4749 27 6 1.0967 -11.0169 -4.6178 28 1 -0.3633 -1.0223 0.1043 29 1 -0.3633 0.6015 0.8333 30 1 -0.3633 0.4209 -0.9375 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5137 33 1 3.2129 1.1749 0.5138 34 1 3.2358 -1.1379 0.1170 35 1 0.3799 -2.2287 -0.4244 36 1 1.4513 -2.9918 0.7747 37 1 3.1079 -3.4673 -1.0081 38 1 2.0364 -2.7042 -2.2072 39 1 1.3068 -5.0347 -0.5563 40 1 2.9820 -5.5712 -2.2327 41 1 1.9106 -4.8088 -3.4323 42 1 -0.2037 -5.9323 -3.9266 43 1 2.9012 -7.7113 -3.3411 44 1 1.8242 -7.1074 -4.6232 45 1 3.2593 -8.4789 -5.2516 46 1 4.1710 -10.1460 -6.7895 47 1 0.4833 -13.8780 -8.3090 48 1 1.1241 -12.9279 -5.5410 49 1 0.2376 -11.2461 -4.0046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563003287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:40 Heat of formation + Delta-G solvation = -85.793693 kcal Electronic energy + Delta-G solvation = -25041.035109 eV Core-core repulsion = 21353.083617 eV Total energy + Delta-G solvation = -3687.951492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68444 -39.17569 -38.29337 -37.63329 -36.12185 -35.12446 -32.63084 -31.77778 -31.06890 -30.35377 -28.66902 -27.39949 -26.50381 -25.07664 -23.23543 -22.83246 -22.47068 -22.07199 -19.22165 -18.84275 -18.66420 -17.85092 -17.33192 -17.01880 -16.74529 -16.20131 -15.79729 -15.74927 -15.65635 -15.35696 -15.01691 -14.90546 -14.67131 -14.43334 -14.08649 -14.04022 -13.91781 -13.55559 -13.26704 -13.17921 -13.04344 -12.85027 -12.81310 -12.64498 -12.48306 -12.39200 -12.34877 -12.05134 -11.92667 -11.66941 -11.55895 -11.43316 -11.19829 -10.94596 -10.87537 -9.58847 -9.54858 -9.37493 -8.85699 -8.56359 -6.24932 0.94962 0.98922 1.26906 1.40226 1.50484 1.53252 2.24839 2.37250 2.75017 3.23475 3.53614 3.64505 3.88373 3.94105 4.01223 4.07639 4.13726 4.23204 4.23931 4.26603 4.34655 4.39177 4.45849 4.53434 4.64258 4.66052 4.71849 4.83424 4.85118 4.92825 4.95346 5.00873 5.03365 5.06067 5.13901 5.17012 5.18763 5.27377 5.29762 5.52266 5.63724 5.84388 5.84759 5.97527 6.06237 6.08054 6.23536 6.38788 6.55075 6.79285 6.87981 6.96815 7.07972 8.42945 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.045053 B = 0.001560 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.343809 B =17940.546763 C =18253.790784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C -0.118 4.118 4 C -0.175 4.175 5 C -0.091 4.091 6 C 0.069 3.931 7 N -0.690 5.690 8 C 0.041 3.959 9 C 0.124 3.876 10 H 0.097 0.903 11 O -0.561 6.561 12 C 0.028 3.972 13 O -0.330 6.330 14 C 0.010 3.990 15 C -0.168 4.168 16 C -0.197 4.197 17 C 0.060 3.940 18 C -0.512 4.512 19 H 0.076 0.924 20 C 0.037 3.963 21 N -0.841 5.841 22 Si 0.978 3.022 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.260 1.260 26 C -0.141 4.141 27 C -0.136 4.136 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.345 0.655 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.383 0.617 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.107 0.893 47 H 0.286 0.714 48 H 0.096 0.904 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 23.255 13.312 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.139 4.139 3 C -0.175 4.175 4 C -0.193 4.193 5 C -0.128 4.128 6 C -0.059 4.059 7 N -0.321 5.321 8 C -0.088 4.088 9 C 0.064 3.936 10 H 0.115 0.885 11 O -0.367 6.367 12 C -0.048 4.048 13 O -0.245 6.245 14 C -0.034 4.034 15 C -0.187 4.187 16 C -0.217 4.217 17 C 0.058 3.942 18 C -0.543 4.543 19 H 0.094 0.906 20 C -0.176 4.176 21 N -0.469 5.469 22 Si 0.799 3.201 23 H -0.186 1.186 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.161 4.161 27 C -0.155 4.155 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.149 0.851 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.050 23.158 13.490 26.821 hybrid contribution 1.310 -0.858 -0.730 1.727 sum 2.360 22.301 12.760 25.802 Atomic orbital electron populations 1.21065 0.92124 1.03173 1.02386 1.21857 0.96382 0.95552 1.00059 1.20844 0.99684 0.94576 1.02398 1.22624 0.99654 0.93677 1.03393 1.20718 1.00051 0.93864 0.98166 1.21857 0.94943 0.89946 0.99193 1.60316 1.55258 1.06019 1.10528 1.22427 0.96211 0.92938 0.97254 1.21795 0.82587 0.92455 0.96773 0.88492 1.86597 1.26664 1.81650 1.41821 1.23531 0.97233 0.83356 1.00662 1.85889 1.56081 1.22992 1.59583 1.18715 0.97444 0.90291 0.96967 1.20746 0.97975 1.00201 0.99765 1.20910 1.03838 0.93607 1.03325 1.17912 0.92277 0.92351 0.91671 1.19591 0.95108 1.15177 1.24426 0.90595 1.26640 0.94539 1.01286 0.95161 1.69881 1.05475 1.36004 1.35500 0.85317 0.78787 0.77159 0.78799 1.18595 1.19550 1.18380 1.20694 1.00080 0.98255 0.97037 1.19989 1.01099 0.92451 1.01920 0.91096 0.91002 0.91547 0.91137 0.91408 0.91646 0.87119 0.90166 0.91226 0.94828 0.91388 0.83644 0.92907 0.89594 0.76819 0.91065 0.91725 0.85114 0.87459 0.90416 0.88576 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.78 71.24 0.70 -0.81 16 2 C -0.14 -1.73 6.05 -16.48 -0.10 -1.83 16 3 C -0.12 -1.15 10.04 71.24 0.71 -0.43 16 4 C -0.17 -2.27 9.11 25.65 0.23 -2.04 16 5 C -0.09 -1.21 5.54 29.85 0.17 -1.04 16 6 C 0.07 0.98 5.67 86.30 0.49 1.47 16 7 N -0.69 -11.36 6.45 -513.88 -3.32 -14.68 16 8 C 0.04 0.69 5.32 86.30 0.46 1.15 16 9 C 0.12 2.81 3.43 30.59 0.10 2.91 16 10 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 11 O -0.56 -14.71 13.25 -144.34 -1.91 -16.62 16 12 C 0.03 0.78 4.37 71.98 0.31 1.10 16 13 O -0.33 -12.91 10.09 -85.27 -0.86 -13.77 16 14 C 0.01 0.44 6.71 22.79 0.15 0.59 16 15 C -0.17 -7.26 8.96 22.11 0.20 -7.07 16 16 C -0.20 -9.62 9.75 22.49 0.22 -9.40 16 17 C 0.06 3.27 5.44 -21.28 -0.12 3.16 16 18 C -0.51 -28.04 8.99 23.40 0.21 -27.83 16 19 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 20 C 0.04 1.90 5.07 85.24 0.43 2.34 16 21 N -0.84 -45.61 11.64 21.82 0.25 -45.35 16 22 Si 0.98 39.13 29.59 68.60 2.03 41.16 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 C -0.14 -7.61 8.61 22.48 0.19 -7.41 16 27 C -0.14 -6.68 9.92 22.11 0.22 -6.46 16 28 H 0.07 0.86 5.27 -2.39 -0.01 0.85 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 33 H 0.06 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.11 1.31 8.01 -2.91 -0.02 1.29 16 35 H 0.08 1.17 5.33 -2.39 -0.01 1.16 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.03 0.44 8.14 -2.38 -0.02 0.43 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.35 5.35 8.73 -89.70 -0.78 4.57 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.38 7.67 9.05 -74.06 -0.67 7.00 16 43 H 0.07 1.78 7.66 -2.38 -0.02 1.77 16 44 H 0.06 1.67 7.63 -2.39 -0.02 1.65 16 45 H 0.13 4.57 6.27 -2.91 -0.02 4.55 16 46 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 47 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 48 H 0.10 5.37 6.89 -2.91 -0.02 5.35 16 49 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -64.49 401.67 0.28 -64.22 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.51 Total: 36.64 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 4.59 Total: -51.59 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -3.06 Total: -60.03 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -2.77 Total: -30.39 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -64.49 0.28 -64.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563003287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.577 kcal (2) G-P(sol) polarization free energy of solvation -64.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds