Wall clock time and date at job start Tue Mar 31 2020 12:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 C 1.52999 * 109.47249 * 185.10733 * 3 2 1 5 5 O 1.42899 * 109.46690 * 61.73711 * 4 3 2 6 6 C 1.53005 * 109.46934 * 181.73503 * 4 3 2 7 7 C 1.52996 * 109.46866 * 303.53107 * 6 4 3 8 8 C 1.53005 * 109.46866 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47146 * 301.73491 * 4 3 2 10 10 C 1.50701 * 109.46911 * 177.83374 * 9 4 3 11 11 O 1.21279 * 119.99811 * 3.50859 * 10 9 4 12 12 N 1.34774 * 119.99774 * 183.50690 * 10 9 4 13 13 C 1.39129 * 119.99675 * 185.18668 * 12 10 9 14 14 C 1.38642 * 120.28796 * 24.59004 * 13 12 10 15 15 C 1.38219 * 120.03573 * 180.25611 * 14 13 12 16 16 C 1.38869 * 120.61209 * 359.74796 * 15 14 13 17 17 C 1.36457 * 120.58054 * 359.97438 * 16 15 14 18 18 C 1.40739 * 119.94426 * 0.02562 * 17 16 15 19 19 C 1.41069 * 120.30329 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99866 * 186.22717 * 19 18 17 21 21 C 1.39954 * 119.99909 * 6.22237 * 19 18 17 22 22 N 1.30847 * 120.00483 * 34.71353 * 21 19 18 23 23 Si 1.86804 * 119.99785 * 214.71665 * 21 19 18 24 24 H 1.48503 * 109.46862 * 264.99741 * 23 21 19 25 25 H 1.48495 * 109.47133 * 24.99706 * 23 21 19 26 26 H 1.48499 * 109.47201 * 144.99981 * 23 21 19 27 27 H 1.08997 * 109.47088 * 300.00109 * 1 2 3 28 28 H 1.09005 * 109.46812 * 59.99874 * 1 2 3 29 29 H 1.08993 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47088 * 239.99891 * 2 1 3 31 31 H 1.09001 * 109.46952 * 119.99392 * 2 1 3 32 32 H 1.09002 * 109.47232 * 65.10842 * 3 2 1 33 33 H 1.09007 * 109.46994 * 305.11000 * 3 2 1 34 34 H 0.96709 * 113.99663 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.47170 * 63.53477 * 6 4 3 36 36 H 1.09003 * 109.46513 * 183.53427 * 6 4 3 37 37 H 1.08993 * 109.47528 * 300.00151 * 7 6 4 38 38 H 1.09003 * 109.47294 * 60.00798 * 7 6 4 39 39 H 1.09008 * 109.46889 * 60.00558 * 8 7 6 40 40 H 1.08998 * 109.47311 * 179.97438 * 8 7 6 41 41 H 1.08993 * 109.47170 * 300.00370 * 8 7 6 42 42 H 1.09000 * 109.46797 * 57.83599 * 9 4 3 43 43 H 1.09000 * 109.46771 * 297.83448 * 9 4 3 44 44 H 0.97000 * 119.99866 * 5.18016 * 12 10 9 45 45 H 1.07998 * 119.98389 * 359.97438 * 14 13 12 46 46 H 1.08001 * 119.69542 * 179.76348 * 15 14 13 47 47 H 1.08002 * 119.70853 * 180.02562 * 16 15 14 48 48 H 1.08003 * 120.03124 * 180.02562 * 17 16 15 49 49 H 0.96998 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5647 1.4444 -0.1284 5 8 3.9388 0.8425 -1.3693 6 6 4.0783 2.8850 -0.0849 7 6 3.4011 3.7013 -1.1875 8 6 3.9152 5.1418 -1.1444 9 6 4.1749 0.6502 1.0282 10 6 5.6732 0.6071 0.8726 11 8 6.2062 1.2104 -0.0345 12 7 6.4209 -0.1018 1.7414 13 6 7.8092 -0.0551 1.6639 14 6 8.4412 1.0385 1.0922 15 6 9.8206 1.0771 1.0131 16 6 10.5868 0.0295 1.5071 17 6 9.9911 -1.0564 2.0798 18 6 8.5883 -1.1206 2.1728 19 6 7.9646 -2.2399 2.7630 20 1 6.8887 -2.3318 2.7421 21 6 8.7400 -3.2311 3.3753 22 7 9.8380 -2.9052 4.0078 23 14 8.2072 -5.0195 3.2896 24 1 7.4373 -5.3657 4.5113 25 1 7.3538 -5.2249 2.0919 26 1 9.4071 -5.8895 3.1975 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8901 32 1 1.7534 1.9293 0.9322 33 1 1.6039 1.9821 -0.8407 34 1 4.8938 0.8092 -1.5181 35 1 3.8477 3.3238 0.8858 36 1 5.1573 2.8907 -0.2392 37 1 3.6316 3.2626 -2.1582 38 1 2.3220 3.6956 -1.0332 39 1 4.9942 5.1472 -1.2991 40 1 3.4331 5.7233 -1.9302 41 1 3.6850 5.5808 -0.1738 42 1 3.7794 -0.3655 1.0201 43 1 3.9214 1.1313 1.9729 44 1 5.9910 -0.6445 2.4208 45 1 7.8552 1.8586 0.7044 46 1 10.3070 1.9300 0.5633 47 1 11.6636 0.0751 1.4380 48 1 10.5957 -1.8659 2.4615 49 1 10.3752 -3.5921 4.4325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579983297.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:14 Heat of formation + Delta-G solvation = -108.309423 kcal Electronic energy + Delta-G solvation = -27671.552136 eV Core-core repulsion = 23982.624288 eV Total energy + Delta-G solvation = -3688.927848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62624 -39.82472 -38.42594 -35.69295 -35.51770 -35.02793 -34.89157 -32.28787 -31.56905 -30.33584 -28.44489 -27.29265 -27.03076 -23.79831 -23.05883 -22.50037 -22.16280 -21.07493 -20.73543 -19.29704 -18.47554 -17.87207 -17.25807 -16.85188 -16.45811 -16.29797 -15.98621 -15.80112 -15.33435 -15.21258 -14.83363 -14.53242 -14.36384 -14.23614 -14.04351 -13.75094 -13.51724 -13.49271 -13.20827 -13.04202 -12.93577 -12.81146 -12.67161 -12.54924 -12.34753 -12.16668 -12.08881 -11.89518 -11.82582 -11.63549 -11.49527 -11.40630 -11.23572 -10.90084 -10.83218 -10.61520 -10.23373 -9.48651 -8.93841 -8.60210 -6.22240 0.86799 1.06347 1.38333 1.48535 1.60399 1.87911 2.15202 2.45909 2.63200 3.37942 3.65494 3.76237 3.83655 3.90732 4.12438 4.21510 4.34556 4.37737 4.44385 4.53414 4.55664 4.62298 4.67613 4.70783 4.81516 4.84306 4.87119 4.95046 5.02720 5.05288 5.09371 5.09755 5.15277 5.26449 5.30505 5.31688 5.34380 5.45037 5.47551 5.50335 5.57596 5.61837 5.72615 5.89292 6.16446 6.21989 6.27313 6.65267 6.67578 6.81843 6.94455 7.05214 7.45132 8.13466 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.003772 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.611328 B = 7421.032582 C = 9238.675933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.101 4.101 4 C 0.155 3.845 5 O -0.574 6.574 6 C -0.154 4.154 7 C -0.114 4.114 8 C -0.151 4.151 9 C -0.163 4.163 10 C 0.497 3.503 11 O -0.565 6.565 12 N -0.634 5.634 13 C -0.008 4.008 14 C -0.095 4.095 15 C -0.256 4.256 16 C -0.110 4.110 17 C -0.215 4.215 18 C 0.073 3.927 19 C -0.486 4.486 20 H 0.089 0.911 21 C 0.051 3.949 22 N -0.786 5.786 23 Si 0.972 3.028 24 H -0.255 1.255 25 H -0.261 1.261 26 H -0.268 1.268 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.379 0.621 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.410 0.590 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.115 0.885 49 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 4.842 -2.455 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.138 4.138 4 C 0.114 3.886 5 O -0.384 6.384 6 C -0.192 4.192 7 C -0.151 4.151 8 C -0.208 4.208 9 C -0.203 4.203 10 C 0.287 3.713 11 O -0.447 6.447 12 N -0.276 5.276 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.276 4.276 16 C -0.129 4.129 17 C -0.235 4.235 18 C 0.069 3.931 19 C -0.513 4.513 20 H 0.107 0.893 21 C -0.170 4.170 22 N -0.409 5.409 23 Si 0.792 3.208 24 H -0.179 1.179 25 H -0.185 1.185 26 H -0.193 1.193 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.247 0.753 45 H 0.136 0.864 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.133 0.867 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.672 5.145 -2.951 16.757 hybrid contribution 1.090 -0.938 0.430 1.501 sum -14.582 4.206 -2.521 15.385 Atomic orbital electron populations 1.21756 0.94923 1.01854 1.02081 1.21548 0.96414 0.96504 1.01932 1.21675 0.90700 0.97988 1.03422 1.20977 0.95075 0.90537 0.82025 1.86346 1.30143 1.82907 1.38996 1.22454 1.01834 0.95066 0.99811 1.21434 1.00365 0.94969 0.98353 1.21771 1.00534 0.96418 1.02072 1.22578 0.89285 1.05167 1.03276 1.21321 0.90528 0.78611 0.80820 1.90461 1.74587 1.45893 1.33757 1.43009 1.04598 1.46682 1.33297 1.17695 0.82665 0.96708 1.13149 1.20888 0.94471 0.96561 0.99624 1.20504 0.93583 1.01190 1.12308 1.20651 0.98475 0.94971 0.98786 1.21126 0.94852 0.99939 1.07554 1.17681 0.92363 0.90668 0.92411 1.19594 0.95514 1.04055 1.32161 0.89337 1.26793 0.93943 1.05631 0.90624 1.69940 1.13566 1.38116 1.19305 0.85349 0.79344 0.75993 0.80110 1.17878 1.18494 1.19300 0.91801 0.92870 0.92653 0.93059 0.91530 0.88883 0.90736 0.76973 0.90996 0.91540 0.93227 0.90774 0.94131 0.91912 0.92235 0.86997 0.85831 0.75318 0.86412 0.87603 0.87738 0.86716 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.33 5.31 30.60 0.16 -2.17 16 3 C -0.10 -1.86 3.99 30.59 0.12 -1.74 16 4 C 0.15 3.71 0.47 -10.79 -0.01 3.71 16 5 O -0.57 -17.06 11.72 -131.24 -1.54 -18.60 16 6 C -0.15 -3.80 4.14 30.59 0.13 -3.68 16 7 C -0.11 -2.50 5.37 30.59 0.16 -2.33 16 8 C -0.15 -3.03 9.91 71.98 0.71 -2.31 16 9 C -0.16 -3.96 4.64 29.85 0.14 -3.82 16 10 C 0.50 17.16 7.15 87.66 0.63 17.78 16 11 O -0.56 -22.35 8.86 14.71 0.13 -22.22 16 12 N -0.63 -24.70 5.12 -302.28 -1.55 -26.25 16 13 C -0.01 -0.38 6.47 38.88 0.25 -0.12 16 14 C -0.10 -4.59 8.71 22.36 0.19 -4.40 16 15 C -0.26 -12.17 10.04 22.42 0.22 -11.94 16 16 C -0.11 -5.36 9.96 22.00 0.22 -5.14 16 17 C -0.21 -11.32 8.88 22.47 0.20 -11.12 16 18 C 0.07 3.78 5.72 -21.18 -0.12 3.66 16 19 C -0.49 -23.81 8.63 23.38 0.20 -23.61 16 20 H 0.09 3.97 6.66 -2.91 -0.02 3.95 16 21 C 0.05 2.35 4.96 85.26 0.42 2.78 16 22 N -0.79 -37.90 10.96 21.83 0.24 -37.66 16 23 Si 0.97 34.82 29.67 68.60 2.04 36.85 16 24 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 25 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 26 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 1.17 7.59 -2.39 -0.02 1.15 16 31 H 0.07 1.15 6.64 -2.39 -0.02 1.13 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.40 6.47 -2.38 -0.02 1.38 16 34 H 0.38 12.60 6.47 -74.05 -0.48 12.12 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.10 5.66 -2.39 -0.01 2.08 16 37 H 0.05 1.25 7.78 -2.39 -0.02 1.23 16 38 H 0.07 1.37 6.40 -2.39 -0.02 1.36 16 39 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 2.47 6.39 -2.39 -0.02 2.46 16 43 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.41 14.26 7.19 -92.71 -0.67 13.60 16 45 H 0.12 5.55 5.76 -2.91 -0.02 5.53 16 46 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 47 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 48 H 0.12 6.18 5.58 -2.91 -0.02 6.16 16 49 H 0.29 12.64 8.30 -92.71 -0.77 11.87 16 Total: -1.00 -59.02 378.20 3.49 -55.53 By element: Atomic # 1 Polarization: 58.49 SS G_CDS: -0.18 Total: 58.30 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 4.36 Total: -45.95 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.31 Total: -63.91 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.41 Total: -40.82 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.04 Total: 36.85 kcal Total: -59.02 3.49 -55.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579983297.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.780 kcal (2) G-P(sol) polarization free energy of solvation -59.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds