Wall clock time and date at job start Tue Mar 31 2020 12:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 C 1.52995 * 109.47096 * 239.99796 * 2 1 3 5 5 C 1.53001 * 109.47111 * 119.99996 * 2 1 3 6 6 C 1.53002 * 109.47365 * 59.99867 * 5 2 1 7 7 H 1.09000 * 115.55766 * 29.29474 * 6 5 2 8 8 C 1.53002 * 117.49773 * 243.61158 * 6 5 2 9 9 C 1.53000 * 60.02940 * 252.51785 * 8 6 5 10 10 H 1.09007 * 117.49605 * 107.50099 * 9 8 6 11 11 C 1.50690 * 117.50063 * 252.49714 * 9 8 6 12 12 O 1.21283 * 120.00042 * 68.61154 * 11 9 8 13 13 N 1.34777 * 120.00347 * 248.60878 * 11 9 8 14 14 C 1.46501 * 120.00401 * 179.97438 * 13 11 9 15 15 C 1.50694 * 109.47059 * 89.99999 * 14 13 11 16 16 H 1.07994 * 120.00553 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99898 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00120 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99906 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46852 * 60.00306 * 19 17 15 21 21 H 1.48493 * 109.46935 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47028 * 300.00279 * 19 17 15 23 23 C 1.46502 * 119.99996 * 0.02562 * 13 11 9 24 24 C 1.50708 * 109.47030 * 89.99686 * 23 13 11 25 25 C 1.34509 * 125.78617 * 89.71707 * 24 23 13 26 26 C 1.41387 * 106.83688 * 179.89030 * 25 24 23 27 27 C 1.34506 * 106.84044 * 0.37132 * 26 25 24 28 28 O 1.34297 * 108.42190 * 359.77501 * 27 26 25 29 29 H 1.09008 * 109.46820 * 300.00535 * 1 2 3 30 30 H 1.08997 * 109.47059 * 59.99388 * 1 2 3 31 31 H 1.08997 * 109.47498 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46922 * 299.99925 * 3 2 1 34 34 H 1.08998 * 109.47674 * 60.00131 * 3 2 1 35 35 H 1.08999 * 109.47180 * 300.00007 * 4 2 1 36 36 H 1.08999 * 109.47129 * 60.00073 * 4 2 1 37 37 H 1.09002 * 109.47335 * 180.02562 * 4 2 1 38 38 H 1.09007 * 109.47338 * 300.00042 * 5 2 1 39 39 H 1.08996 * 109.47269 * 180.02562 * 5 2 1 40 40 H 1.09002 * 117.49918 * 145.01819 * 8 6 5 41 41 H 1.09002 * 117.49754 * 0.02562 * 8 6 5 42 42 H 1.08998 * 109.47107 * 210.00473 * 14 13 11 43 43 H 1.09008 * 109.46816 * 330.00213 * 14 13 11 44 44 H 0.97005 * 120.00015 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.47368 * 209.99989 * 23 13 11 46 46 H 1.09002 * 109.46842 * 330.00142 * 23 13 11 47 47 H 1.08004 * 126.58252 * 0.02911 * 25 24 23 48 48 H 1.08007 * 126.57557 * 180.12404 * 26 25 24 49 49 H 1.08004 * 125.79004 * 179.78858 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2493 7 1 1.3618 -2.6031 0.2661 8 6 0.5862 -2.5793 2.3796 9 6 2.0285 -3.0896 2.3617 10 1 2.7196 -2.6708 3.0933 11 6 2.2495 -4.5391 2.0142 12 8 2.0330 -4.9324 0.8875 13 7 2.6879 -5.3985 2.9553 14 6 2.9022 -6.8079 2.6176 15 6 4.3190 -7.0005 2.1416 16 1 4.9925 -6.1576 2.0956 17 6 4.7553 -8.2529 1.7647 18 7 3.9351 -9.2793 1.8202 19 14 6.5118 -8.4918 1.1753 20 1 7.4537 -8.0926 2.2516 21 1 6.7286 -9.9201 0.8317 22 1 6.7490 -7.6525 -0.0266 23 6 2.9490 -4.9236 4.3164 24 6 1.6951 -5.0522 5.1425 25 6 1.3355 -6.1291 5.8640 26 6 0.1001 -5.8174 6.4769 27 6 -0.2253 -4.5720 6.0867 28 8 0.7444 -4.1135 5.2786 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6766 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.6766 -0.2074 2.1393 39 1 3.1299 -0.7209 1.2495 40 1 -0.2028 -3.2922 2.1400 41 1 0.3283 -1.8249 3.1229 42 1 2.7286 -7.4234 3.5002 43 1 2.2105 -7.1015 1.8280 44 1 4.2420 -10.1604 1.5547 45 1 3.7422 -5.5222 4.7642 46 1 3.2569 -3.8785 4.2837 47 1 1.8861 -7.0534 5.9588 48 1 -0.4742 -6.4582 7.1297 49 1 -1.1153 -4.0322 6.3747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592757304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:14 Heat of formation + Delta-G solvation = -29.895678 kcal Electronic energy + Delta-G solvation = -27647.703140 eV Core-core repulsion = 23962.175567 eV Total energy + Delta-G solvation = -3685.527572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38980 -41.08560 -39.17736 -37.02851 -36.36987 -34.83719 -33.79645 -31.53804 -29.76379 -28.42792 -28.10805 -28.02839 -26.79327 -25.89808 -23.53330 -22.57722 -21.97048 -21.58315 -19.92037 -19.55583 -18.79885 -18.27849 -17.88749 -17.34399 -16.68036 -16.40561 -16.16778 -15.61139 -15.41505 -15.37685 -15.04885 -14.72682 -14.40034 -14.08329 -13.93872 -13.84939 -13.69974 -13.53727 -13.34895 -13.16902 -13.06181 -13.02573 -12.68850 -12.60828 -12.53344 -12.47894 -12.33451 -12.22442 -11.86134 -11.77827 -11.57964 -11.29509 -11.00655 -10.82161 -10.78729 -10.65165 -10.58401 -9.68094 -9.35072 -8.23857 -6.38871 0.79572 1.36142 1.40727 1.47736 1.60693 1.72592 2.17324 2.33506 2.44307 2.95664 3.06243 3.54873 3.75386 3.77515 3.92907 4.00574 4.06325 4.11345 4.17532 4.19370 4.29115 4.40750 4.50604 4.59164 4.73569 4.74562 4.81154 4.88079 4.92731 4.94852 4.99622 5.00234 5.03174 5.06903 5.08869 5.15915 5.19138 5.21008 5.24880 5.30191 5.39573 5.49345 5.51006 5.58556 5.62462 5.64730 5.78364 6.03123 6.27486 6.63567 6.71618 7.25605 7.42169 8.83700 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.004492 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.143689 B = 6232.129370 C = 8771.791351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.137 4.137 4 C -0.147 4.147 5 C -0.071 4.071 6 C -0.114 4.114 7 H 0.089 0.911 8 C -0.119 4.119 9 C -0.194 4.194 10 H 0.143 0.857 11 C 0.528 3.472 12 O -0.595 6.595 13 N -0.595 5.595 14 C 0.267 3.733 15 C -0.544 4.544 16 H 0.057 0.943 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.191 3.809 24 C -0.040 4.040 25 C -0.215 4.215 26 C -0.232 4.232 27 C -0.033 4.033 28 O -0.171 6.171 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.023 0.977 43 H -0.009 1.009 44 H 0.267 0.733 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.136 0.864 48 H 0.164 0.836 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 20.860 7.410 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.133 4.133 7 H 0.107 0.893 8 C -0.157 4.157 9 C -0.215 4.215 10 H 0.160 0.840 11 C 0.318 3.682 12 O -0.476 6.476 13 N -0.324 5.324 14 C 0.146 3.854 15 C -0.583 4.583 16 H 0.075 0.925 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.792 3.208 20 H -0.181 1.181 21 H -0.204 1.204 22 H -0.204 1.204 23 C 0.069 3.931 24 C -0.092 4.092 25 C -0.236 4.236 26 C -0.251 4.251 27 C -0.100 4.100 28 O -0.067 6.067 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.041 0.959 43 H 0.010 0.990 44 H 0.076 0.924 45 H 0.129 0.871 46 H 0.135 0.865 47 H 0.154 0.846 48 H 0.182 0.818 49 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.230 20.719 6.661 22.933 hybrid contribution 0.735 -1.667 -0.443 1.875 sum -6.495 19.052 6.218 21.067 Atomic orbital electron populations 1.21857 0.94150 1.01429 1.02144 1.20499 0.96100 0.95735 0.94155 1.21827 1.00947 0.94191 1.02407 1.21970 1.00771 0.99797 0.97919 1.21274 1.00299 0.90482 0.98758 1.22498 1.01586 0.95457 0.93757 0.89271 1.23006 0.89376 1.02136 1.01161 1.22326 1.02458 0.90252 1.06446 0.83954 1.20496 0.75545 0.88273 0.83911 1.90618 1.53900 1.80027 1.23073 1.48186 1.64262 1.10314 1.09677 1.18703 0.95260 0.76844 0.94631 1.21667 0.97337 0.94396 1.44852 0.92481 1.25861 1.02451 0.95381 0.95262 1.70057 1.37524 1.00564 1.48651 0.85468 0.79209 0.77163 0.78990 1.18148 1.20396 1.20398 1.20021 0.90247 1.03158 0.79717 1.22921 0.94042 0.89453 1.02752 1.21881 0.99463 0.99659 1.02555 1.22106 0.98062 0.98473 1.06482 1.24824 0.94294 0.96113 0.94781 1.84008 1.27320 1.40855 1.54523 0.91454 0.92540 0.93763 0.92738 0.92254 0.91516 0.94269 0.92057 0.93146 0.89403 0.91631 0.90910 0.84749 0.95947 0.99049 0.92397 0.87095 0.86534 0.84645 0.81791 0.74036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.23 71.98 0.59 -1.78 16 2 C -0.06 -1.17 0.80 -52.18 -0.04 -1.22 16 3 C -0.14 -1.93 8.47 71.98 0.61 -1.32 16 4 C -0.15 -3.24 8.23 71.98 0.59 -2.65 16 5 C -0.07 -1.39 4.55 30.60 0.14 -1.25 16 6 C -0.11 -3.09 3.77 -10.77 -0.04 -3.13 16 7 H 0.09 3.02 5.59 -2.39 -0.01 3.01 16 8 C -0.12 -3.01 9.88 30.60 0.30 -2.70 16 9 C -0.19 -5.96 5.01 -11.52 -0.06 -6.02 16 10 H 0.14 3.56 6.44 -2.38 -0.02 3.54 16 11 C 0.53 23.43 7.45 87.65 0.65 24.09 16 12 O -0.59 -32.71 15.84 -3.04 -0.05 -32.76 16 13 N -0.59 -26.47 2.44 -830.50 -2.03 -28.49 16 14 C 0.27 14.85 5.16 85.63 0.44 15.29 16 15 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 16 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 17 C 0.01 0.56 5.46 84.66 0.46 1.02 16 18 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 19 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 C 0.19 6.38 5.76 85.64 0.49 6.87 16 24 C -0.04 -1.27 6.90 24.83 0.17 -1.10 16 25 C -0.22 -6.86 10.81 22.19 0.24 -6.62 16 26 C -0.23 -5.86 10.91 22.19 0.24 -5.62 16 27 C -0.03 -0.70 12.09 66.97 0.81 0.11 16 28 O -0.17 -4.60 10.65 -2.39 -0.03 -4.63 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.91 7.20 -2.39 -0.02 0.89 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.04 1.05 6.14 -2.39 -0.01 1.03 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.33 7.88 -2.38 -0.02 1.31 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.13 2.41 8.03 -2.39 -0.02 2.39 16 42 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 43 H -0.01 -0.56 7.42 -2.38 -0.02 -0.58 16 44 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 45 H 0.11 3.69 8.07 -2.39 -0.02 3.67 16 46 H 0.12 3.06 5.99 -2.39 -0.01 3.05 16 47 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 48 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 49 H 0.24 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -76.93 400.36 6.98 -69.95 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.91 Total: 22.92 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.85 Total: -17.57 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.74 Total: -85.23 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.07 Total: -37.39 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -76.93 6.98 -69.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592757304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.059 kcal (2) G-P(sol) polarization free energy of solvation -76.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds