Wall clock time and date at job start Tue Mar 31 2020 12:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47400 * 2 1 4 4 C 1.53000 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47010 * 60.00313 * 4 3 2 6 6 C 1.52999 * 109.47290 * 300.00267 * 4 3 2 7 7 C 1.50699 * 109.47103 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99873 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99874 * 180.02562 * 7 4 3 10 10 C 1.39917 * 120.00075 * 185.27630 * 9 7 4 11 11 C 1.38933 * 120.04163 * 213.30012 * 10 9 7 12 12 C 1.38126 * 120.03704 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.12957 * 359.67795 * 12 11 10 14 14 C 1.38771 * 120.08124 * 0.59791 * 13 12 11 15 15 O 1.35895 * 120.02297 * 179.70093 * 14 13 12 16 16 C 1.42900 * 116.99754 * 359.72087 * 15 14 13 17 17 C 1.52998 * 109.47222 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00159 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46927 * 89.99699 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00104 * 22 20 18 25 25 H 1.48502 * 109.46953 * 330.00160 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42449 * 14 13 12 27 27 H 1.09005 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46960 * 299.99418 * 1 2 3 29 29 H 1.08994 * 109.47405 * 60.00036 * 1 2 3 30 30 H 1.09004 * 109.46757 * 239.99826 * 2 1 3 31 31 H 1.09003 * 109.47059 * 120.00456 * 2 1 3 32 32 H 1.09003 * 109.46589 * 60.00354 * 3 2 1 33 33 H 1.08997 * 109.47224 * 300.00645 * 3 2 1 34 34 H 1.09000 * 109.46946 * 179.97438 * 5 4 3 35 35 H 1.09008 * 109.46927 * 300.00120 * 5 4 3 36 36 H 1.08997 * 109.46856 * 59.99820 * 5 4 3 37 37 H 1.09001 * 109.46998 * 300.00440 * 6 4 3 38 38 H 1.09008 * 109.47000 * 59.99664 * 6 4 3 39 39 H 1.09000 * 109.47314 * 180.02562 * 6 4 3 40 40 H 0.96997 * 120.00199 * 5.26862 * 9 7 4 41 41 H 1.08000 * 119.98133 * 0.02562 * 11 10 9 42 42 H 1.08000 * 119.93323 * 179.97438 * 12 11 10 43 43 H 1.07998 * 119.96326 * 180.29751 * 13 12 11 44 44 H 1.09001 * 109.47255 * 300.00595 * 16 15 14 45 45 H 1.09007 * 109.47126 * 60.00411 * 16 15 14 46 46 H 1.09001 * 109.47272 * 300.00316 * 17 16 15 47 47 H 1.08994 * 109.47017 * 59.99801 * 17 16 15 48 48 H 0.97002 * 120.00033 * 179.97438 * 21 20 18 49 49 H 1.07997 * 120.05730 * 180.25512 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7211 -1.2483 6 6 4.0796 0.7213 1.2502 7 6 4.0724 2.8632 0.0013 8 8 3.2842 3.7851 0.0008 9 7 5.3975 3.1095 0.0014 10 6 5.8648 4.4235 0.1134 11 6 7.0334 4.8037 -0.5348 12 6 7.4950 6.1009 -0.4237 13 6 6.7928 7.0252 0.3264 14 6 5.6281 6.6496 0.9807 15 8 4.9420 7.5579 1.7229 16 6 5.4805 8.8798 1.7907 17 6 4.5787 9.7537 2.6648 18 6 5.1462 11.1479 2.7358 19 1 6.0587 11.3870 2.2098 20 6 4.5001 12.1186 3.4715 21 7 3.3881 11.8280 4.1108 22 14 5.2032 13.8471 3.5589 23 1 4.6448 14.6652 2.4526 24 1 4.8424 14.4630 4.8611 25 1 6.6816 13.7870 3.4326 26 6 5.1619 5.3486 0.8720 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 5.1706 0.7215 -1.2481 35 1 3.7172 -0.3067 -1.2484 36 1 3.7176 1.2348 -2.1385 37 1 3.7158 1.2352 2.1399 38 1 3.7162 -0.3064 1.2501 39 1 5.1696 0.7217 1.2508 40 1 6.0271 2.3758 -0.0761 41 1 7.5812 4.0847 -1.1258 42 1 8.4038 6.3945 -0.9279 43 1 7.1536 8.0399 0.4075 44 1 6.4802 8.8431 2.2235 45 1 5.5342 9.3022 0.7873 46 1 3.5788 9.7904 2.2324 47 1 4.5253 9.3312 3.6680 48 1 2.9337 12.5108 4.6286 49 1 4.2534 5.0555 1.3771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593033001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:05 Heat of formation + Delta-G solvation = -78.914941 kcal Electronic energy + Delta-G solvation = -26300.172601 eV Core-core repulsion = 22612.519394 eV Total energy + Delta-G solvation = -3687.653207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99221 -39.49353 -37.62511 -36.63915 -34.66388 -33.33536 -32.87476 -30.84135 -29.52441 -28.95018 -27.82481 -26.85406 -25.10452 -24.39596 -22.83967 -22.08896 -21.32003 -20.31380 -19.28960 -18.30543 -17.00651 -16.42854 -16.11869 -15.76215 -15.55238 -15.47026 -15.24805 -14.95388 -14.75459 -14.50905 -14.30975 -13.66074 -13.43241 -13.33096 -12.95215 -12.73258 -12.70004 -12.61650 -12.30128 -12.22809 -12.06577 -11.75932 -11.66389 -11.45035 -11.38391 -11.21800 -11.03019 -10.90625 -10.80041 -10.75891 -10.52585 -10.27620 -9.79764 -9.73536 -9.61614 -9.26745 -8.42720 -8.21758 -7.79605 -6.07323 -4.11995 1.37477 1.65943 2.50509 2.82078 3.29384 3.35057 3.37963 3.85055 3.99470 4.22039 4.28021 4.44166 4.45405 4.73189 4.77976 4.87913 5.01152 5.07076 5.13584 5.20514 5.28089 5.28884 5.31789 5.38947 5.45658 5.48216 5.48503 5.54123 5.63747 5.69400 5.71795 5.73776 5.88763 5.93899 6.00768 6.06399 6.07686 6.10459 6.31040 6.38947 6.55264 6.62038 6.77666 7.00843 7.24981 7.54615 7.68257 7.84505 7.98573 8.10581 8.27058 8.93653 9.52030 11.04289 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002304 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.273887 B =12151.507783 C =13469.761347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.098 4.098 4 C -0.079 4.079 5 C -0.144 4.144 6 C -0.144 4.144 7 C 0.518 3.482 8 O -0.507 6.507 9 N -0.671 5.671 10 C 0.178 3.822 11 C -0.198 4.198 12 C -0.061 4.061 13 C -0.227 4.227 14 C 0.165 3.835 15 O -0.312 6.312 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.164 4.164 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.408 0.592 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -27.670 -10.596 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.083 4.083 5 C -0.201 4.201 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.380 6.380 9 N -0.317 5.317 10 C 0.085 3.915 11 C -0.218 4.218 12 C -0.080 4.080 13 C -0.246 4.246 14 C 0.117 3.883 15 O -0.225 6.225 16 C -0.009 4.009 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.185 4.185 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.244 0.756 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.027 -26.976 -10.340 29.048 hybrid contribution 0.890 0.817 -0.061 1.209 sum 3.916 -26.159 -10.401 28.422 Atomic orbital electron populations 1.21769 0.95694 1.01464 1.02172 1.21670 0.96074 0.96527 1.02107 1.21481 0.91282 0.96941 1.03895 1.20824 0.97999 0.91447 0.97991 1.21947 1.00968 1.01083 0.96143 1.21945 1.01107 1.00982 0.96139 1.20806 0.81731 0.91629 0.75379 1.90788 1.54907 1.45979 1.46285 1.43506 1.07802 1.07086 1.73271 1.17303 0.94346 0.84188 0.95704 1.20609 0.98853 0.97390 1.04957 1.20657 0.98559 0.92119 0.96636 1.21381 0.97645 1.01441 1.04135 1.18957 0.90043 0.89588 0.89742 1.86191 1.50061 1.21646 1.64610 1.23350 0.98810 0.77891 1.00852 1.19130 0.95031 0.92376 0.94721 1.20968 1.09829 0.94250 1.31344 0.92350 1.24999 0.94879 0.99149 0.95224 1.69981 1.17040 1.34107 1.31609 0.86483 0.79344 0.84024 0.77502 1.20498 1.21064 1.19772 1.20252 1.03350 0.91248 1.03642 0.92834 0.92570 0.92664 0.91749 0.91663 0.90895 0.91030 0.92245 0.90774 0.91845 0.91704 0.90791 0.92150 0.75575 0.86178 0.85725 0.85052 0.93053 0.93052 0.95349 0.95384 0.92714 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.79 5.23 -26.73 -0.14 -0.93 16 3 C -0.10 -0.85 3.56 -26.73 -0.10 -0.95 16 4 C -0.08 -0.63 0.65 -155.66 -0.10 -0.73 16 5 C -0.14 -0.81 8.02 37.16 0.30 -0.51 16 6 C -0.14 -0.90 8.02 37.16 0.30 -0.60 16 7 C 0.52 6.17 6.22 -10.99 -0.07 6.10 16 8 O -0.51 -8.47 13.67 5.55 0.08 -8.39 16 9 N -0.67 -7.09 5.12 -9.88 -0.05 -7.14 16 10 C 0.18 2.48 6.28 -83.72 -0.53 1.96 16 11 C -0.20 -2.40 9.96 -39.37 -0.39 -2.80 16 12 C -0.06 -0.80 10.03 -39.63 -0.40 -1.19 16 13 C -0.23 -3.67 9.04 -39.39 -0.36 -4.02 16 14 C 0.16 3.11 6.68 -39.24 -0.26 2.85 16 15 O -0.31 -6.91 10.13 -19.41 -0.20 -7.11 16 16 C 0.06 1.45 4.68 37.16 0.17 1.62 16 17 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.16 -2.88 8.59 -39.25 -0.34 -3.22 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 31 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.06 0.25 7.45 -51.93 -0.39 -0.14 16 35 H 0.07 0.31 6.43 -51.92 -0.33 -0.02 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.34 6.43 -51.92 -0.33 0.01 16 39 H 0.06 0.30 7.69 -51.93 -0.40 -0.10 16 40 H 0.41 2.77 7.68 -40.82 -0.31 2.45 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 2.07 6.29 -52.49 -0.33 1.73 16 44 H 0.05 1.07 7.67 -51.93 -0.40 0.68 16 45 H 0.05 1.09 7.65 -51.92 -0.40 0.69 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.14 2.64 6.41 -52.49 -0.34 2.30 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -33.66 391.77 -8.73 -42.40 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.08 Total: 0.18 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.10 Total: -16.18 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.69 Total: -33.37 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.12 Total: -15.49 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.66 -8.73 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593033001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.519 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds