Wall clock time and date at job start Tue Mar 31 2020 12:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47400 * 2 1 4 4 C 1.53000 * 109.47400 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47010 * 60.00313 * 4 3 2 6 6 C 1.52999 * 109.47290 * 300.00267 * 4 3 2 7 7 C 1.50699 * 109.47103 * 180.02562 * 4 3 2 8 8 O 1.21288 * 119.99873 * 359.97438 * 7 4 3 9 9 N 1.34776 * 119.99874 * 180.02562 * 7 4 3 10 10 C 1.39917 * 120.00075 * 185.27630 * 9 7 4 11 11 C 1.38933 * 120.04163 * 213.30012 * 10 9 7 12 12 C 1.38126 * 120.03704 * 180.02562 * 11 10 9 13 13 C 1.38210 * 120.12957 * 359.67795 * 12 11 10 14 14 C 1.38771 * 120.08124 * 0.59791 * 13 12 11 15 15 O 1.35895 * 120.02297 * 179.70093 * 14 13 12 16 16 C 1.42900 * 116.99754 * 359.72087 * 15 14 13 17 17 C 1.52998 * 109.47222 * 180.02562 * 16 15 14 18 18 C 1.50698 * 109.47324 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00090 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00026 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00159 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46927 * 89.99699 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00104 * 22 20 18 25 25 H 1.48502 * 109.46953 * 330.00160 * 22 20 18 26 26 C 1.38631 * 119.95633 * 359.42449 * 14 13 12 27 27 H 1.09005 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46960 * 299.99418 * 1 2 3 29 29 H 1.08994 * 109.47405 * 60.00036 * 1 2 3 30 30 H 1.09004 * 109.46757 * 239.99826 * 2 1 3 31 31 H 1.09003 * 109.47059 * 120.00456 * 2 1 3 32 32 H 1.09003 * 109.46589 * 60.00354 * 3 2 1 33 33 H 1.08997 * 109.47224 * 300.00645 * 3 2 1 34 34 H 1.09000 * 109.46946 * 179.97438 * 5 4 3 35 35 H 1.09008 * 109.46927 * 300.00120 * 5 4 3 36 36 H 1.08997 * 109.46856 * 59.99820 * 5 4 3 37 37 H 1.09001 * 109.46998 * 300.00440 * 6 4 3 38 38 H 1.09008 * 109.47000 * 59.99664 * 6 4 3 39 39 H 1.09000 * 109.47314 * 180.02562 * 6 4 3 40 40 H 0.96997 * 120.00199 * 5.26862 * 9 7 4 41 41 H 1.08000 * 119.98133 * 0.02562 * 11 10 9 42 42 H 1.08000 * 119.93323 * 179.97438 * 12 11 10 43 43 H 1.07998 * 119.96326 * 180.29751 * 13 12 11 44 44 H 1.09001 * 109.47255 * 300.00595 * 16 15 14 45 45 H 1.09007 * 109.47126 * 60.00411 * 16 15 14 46 46 H 1.09001 * 109.47272 * 300.00316 * 17 16 15 47 47 H 1.08994 * 109.47017 * 59.99801 * 17 16 15 48 48 H 0.97002 * 120.00033 * 179.97438 * 21 20 18 49 49 H 1.07997 * 120.05730 * 180.25512 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0806 0.7211 -1.2483 6 6 4.0796 0.7213 1.2502 7 6 4.0724 2.8632 0.0013 8 8 3.2842 3.7851 0.0008 9 7 5.3975 3.1095 0.0014 10 6 5.8648 4.4235 0.1134 11 6 7.0334 4.8037 -0.5348 12 6 7.4950 6.1009 -0.4237 13 6 6.7928 7.0252 0.3264 14 6 5.6281 6.6496 0.9807 15 8 4.9420 7.5579 1.7229 16 6 5.4805 8.8798 1.7907 17 6 4.5787 9.7537 2.6648 18 6 5.1462 11.1479 2.7358 19 1 6.0587 11.3870 2.2098 20 6 4.5001 12.1186 3.4715 21 7 3.3881 11.8280 4.1108 22 14 5.2032 13.8471 3.5589 23 1 4.6448 14.6652 2.4526 24 1 4.8424 14.4630 4.8611 25 1 6.6816 13.7870 3.4326 26 6 5.1619 5.3486 0.8720 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 5.1706 0.7215 -1.2481 35 1 3.7172 -0.3067 -1.2484 36 1 3.7176 1.2348 -2.1385 37 1 3.7158 1.2352 2.1399 38 1 3.7162 -0.3064 1.2501 39 1 5.1696 0.7217 1.2508 40 1 6.0271 2.3758 -0.0761 41 1 7.5812 4.0847 -1.1258 42 1 8.4038 6.3945 -0.9279 43 1 7.1536 8.0399 0.4075 44 1 6.4802 8.8431 2.2235 45 1 5.5342 9.3022 0.7873 46 1 3.5788 9.7904 2.2324 47 1 4.5253 9.3312 3.6680 48 1 2.9337 12.5108 4.6286 49 1 4.2534 5.0555 1.3771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593033001.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:04 Heat of formation + Delta-G solvation = -99.350910 kcal Electronic energy + Delta-G solvation = -26301.058771 eV Core-core repulsion = 22612.519394 eV Total energy + Delta-G solvation = -3688.539377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98957 -40.80097 -38.80117 -37.58602 -35.83474 -35.39400 -33.49868 -32.62459 -30.99639 -30.16817 -28.28775 -27.47280 -27.04472 -25.37447 -23.91397 -23.58834 -22.52582 -21.60647 -20.16276 -19.59876 -18.43916 -17.85203 -17.31122 -17.02235 -16.90605 -16.79407 -16.50463 -16.24091 -15.83260 -15.55680 -15.17162 -14.62579 -14.51279 -14.37522 -14.30601 -14.00874 -13.96446 -13.45072 -13.31536 -13.23995 -13.11885 -12.78262 -12.73659 -12.65684 -12.63337 -12.56884 -12.22701 -12.00895 -11.85073 -11.80417 -11.62596 -11.59766 -11.43819 -11.35354 -11.22695 -10.71590 -10.64671 -9.44932 -9.03778 -8.28437 -6.43054 0.20598 0.45926 1.39357 1.42604 1.53406 1.53958 1.88899 2.28442 2.51217 2.80485 3.05683 3.48614 3.65568 3.83925 3.88547 4.11141 4.15835 4.18387 4.23082 4.23734 4.25377 4.30115 4.42153 4.53196 4.56191 4.67805 4.72552 4.73178 4.78793 4.80020 4.92292 4.93414 5.03655 5.07400 5.20348 5.22443 5.23304 5.26206 5.31606 5.34426 5.38476 5.41970 5.45221 5.49095 5.50484 5.66051 5.89347 6.04282 6.37318 6.53349 6.71846 7.09473 7.27267 8.85109 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.002304 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.273887 B =12151.507783 C =13469.761347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.071 4.071 5 C -0.141 4.141 6 C -0.143 4.143 7 C 0.511 3.489 8 O -0.565 6.565 9 N -0.655 5.655 10 C 0.179 3.821 11 C -0.175 4.175 12 C -0.051 4.051 13 C -0.235 4.235 14 C 0.124 3.876 15 O -0.347 6.347 16 C 0.085 3.915 17 C 0.027 3.973 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.981 3.019 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.256 1.256 26 C -0.189 4.189 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.431 0.569 41 H 0.170 0.830 42 H 0.167 0.833 43 H 0.133 0.867 44 H 0.066 0.934 45 H 0.061 0.939 46 H -0.007 1.007 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -29.781 -12.710 33.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.074 4.074 5 C -0.198 4.198 6 C -0.200 4.200 7 C 0.300 3.700 8 O -0.442 6.442 9 N -0.302 5.302 10 C 0.084 3.916 11 C -0.195 4.195 12 C -0.070 4.070 13 C -0.255 4.255 14 C 0.078 3.922 15 O -0.261 6.261 16 C 0.011 3.989 17 C -0.010 4.010 18 C -0.583 4.583 19 H 0.092 0.908 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.803 3.197 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.180 1.180 26 C -0.210 4.210 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.187 0.813 42 H 0.185 0.815 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.011 0.989 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.714 -29.153 -12.473 32.412 hybrid contribution -0.275 1.323 0.549 1.459 sum 6.439 -27.830 -11.924 30.954 Atomic orbital electron populations 1.21803 0.96188 1.02164 1.01285 1.21648 0.95648 0.94631 1.03632 1.21459 0.92394 0.98352 1.01460 1.20859 0.97072 0.89015 1.00472 1.21988 1.02426 1.01614 0.93816 1.21989 1.02350 1.01644 0.94034 1.21716 0.81634 0.92878 0.73728 1.90777 1.56423 1.48121 1.48838 1.43426 1.07936 1.06571 1.72231 1.17469 0.94543 0.84885 0.94715 1.21141 0.97325 0.97957 1.03063 1.21160 0.99122 0.91664 0.95017 1.21531 0.96919 1.02463 1.04549 1.19264 0.91854 0.89449 0.91670 1.86095 1.51658 1.21834 1.66546 1.22903 0.97803 0.78021 1.00211 1.18982 0.94501 0.93757 0.93794 1.21391 1.10477 0.94743 1.31647 0.90769 1.26127 0.95064 1.04374 0.94455 1.70142 1.18704 1.35957 1.32463 0.85219 0.79249 0.77483 0.77703 1.19535 1.20621 1.18001 1.20218 1.03274 0.92034 1.05457 0.91244 0.93783 0.93371 0.89795 0.90292 0.93850 0.93155 0.89950 0.88483 0.92989 0.93829 0.88326 0.90183 0.72886 0.81268 0.81514 0.84903 0.91605 0.92060 0.98852 0.98497 0.92424 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.91 71.98 0.71 -1.31 16 2 C -0.12 -1.33 5.23 30.59 0.16 -1.17 16 3 C -0.10 -1.79 3.56 30.59 0.11 -1.68 16 4 C -0.07 -1.05 0.65 -52.93 -0.03 -1.09 16 5 C -0.14 -1.15 8.02 71.98 0.58 -0.57 16 6 C -0.14 -1.49 8.02 71.98 0.58 -0.91 16 7 C 0.51 12.38 6.22 87.66 0.54 12.92 16 8 O -0.56 -20.54 13.67 -3.05 -0.04 -20.58 16 9 N -0.65 -12.76 5.12 -303.55 -1.55 -14.31 16 10 C 0.18 4.78 6.28 38.14 0.24 5.02 16 11 C -0.17 -3.54 9.96 22.41 0.22 -3.32 16 12 C -0.05 -1.15 10.03 22.24 0.22 -0.93 16 13 C -0.24 -7.45 9.04 22.39 0.20 -7.25 16 14 C 0.12 4.92 6.68 22.49 0.15 5.07 16 15 O -0.35 -16.63 10.13 -92.36 -0.94 -17.57 16 16 C 0.08 3.99 4.68 71.98 0.34 4.32 16 17 C 0.03 1.56 5.34 29.85 0.16 1.72 16 18 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 19 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.93 -58.80 13.29 21.45 0.28 -58.52 16 22 Si 0.98 44.53 29.54 68.60 2.03 46.55 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 C -0.19 -7.02 8.59 22.49 0.19 -6.83 16 27 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.65 6.43 -2.38 -0.02 0.63 16 31 H 0.08 0.70 6.43 -2.39 -0.02 0.68 16 32 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 33 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.08 0.31 7.45 -2.39 -0.02 0.29 16 35 H 0.10 0.39 6.43 -2.38 -0.02 0.38 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.58 6.43 -2.38 -0.02 0.56 16 39 H 0.08 0.53 7.69 -2.39 -0.02 0.51 16 40 H 0.43 4.23 7.68 -92.71 -0.71 3.51 16 41 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.13 4.08 6.29 -2.91 -0.02 4.06 16 44 H 0.07 2.84 7.67 -2.39 -0.02 2.82 16 45 H 0.06 2.70 7.65 -2.38 -0.02 2.68 16 46 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 47 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 49 H 0.11 4.56 6.41 -2.91 -0.02 4.54 16 Total: -1.00 -81.54 391.77 5.07 -76.47 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.22 Total: 15.21 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 5.07 Total: -27.25 kcal Atomic # 7 Polarization: -71.56 SS G_CDS: -1.27 Total: -72.83 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.98 Total: -38.14 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -81.54 5.07 -76.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593033001.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.886 kcal (2) G-P(sol) polarization free energy of solvation -81.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds