Wall clock time and date at job start Tue Mar 31 2020 12:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 C 1.53001 * 109.47046 * 298.15152 * 3 2 1 5 5 C 1.52994 * 109.47214 * 294.11831 * 4 3 2 6 6 C 1.53008 * 109.46941 * 58.14856 * 3 2 1 7 7 N 1.46497 * 109.46791 * 65.00030 * 6 3 2 8 8 C 1.46500 * 120.00322 * 270.00106 * 7 6 3 9 9 C 1.50697 * 109.46851 * 278.60457 * 8 7 6 10 10 H 1.08005 * 120.00635 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99936 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99642 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47548 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47121 * 120.00477 * 13 11 9 16 16 H 1.48501 * 109.46736 * 240.00103 * 13 11 9 17 17 C 1.34780 * 119.99719 * 90.00341 * 7 6 3 18 18 O 1.21547 * 120.00016 * 6.12946 * 17 7 6 19 19 C 1.47845 * 119.99806 * 186.13238 * 17 7 6 20 20 C 1.39585 * 120.14469 * 149.92910 * 19 17 7 21 21 C 1.37951 * 119.85189 * 180.02562 * 20 19 17 22 22 C 1.38364 * 120.14794 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.85228 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.46583 * 90.00346 * 23 22 21 25 25 C 1.38358 * 120.29025 * 0.23085 * 22 21 20 26 26 C 1.37962 * 120.14539 * 359.49093 * 25 22 21 27 27 H 1.08998 * 109.47071 * 63.99157 * 1 2 3 28 28 H 1.08997 * 109.47375 * 183.99783 * 1 2 3 29 29 H 1.08999 * 109.46846 * 303.99278 * 1 2 3 30 30 H 1.09007 * 109.46931 * 240.00094 * 2 1 3 31 31 H 1.09000 * 109.47332 * 120.00041 * 2 1 3 32 32 H 1.08998 * 109.47588 * 178.14469 * 3 2 1 33 33 H 1.09007 * 109.46721 * 54.11775 * 4 3 2 34 34 H 1.09003 * 109.47010 * 174.11665 * 4 3 2 35 35 H 1.09011 * 109.47024 * 305.53607 * 5 4 3 36 36 H 1.08996 * 109.47666 * 65.53560 * 5 4 3 37 37 H 1.09002 * 109.47613 * 185.54112 * 5 4 3 38 38 H 1.09000 * 109.46706 * 305.00380 * 6 3 2 39 39 H 1.08997 * 109.47140 * 185.00048 * 6 3 2 40 40 H 1.08998 * 109.46840 * 38.60557 * 8 7 6 41 41 H 1.08998 * 109.47041 * 158.60792 * 8 7 6 42 42 H 0.97001 * 119.99705 * 179.97438 * 12 11 9 43 43 H 1.07990 * 120.06840 * 359.97438 * 20 19 17 44 44 H 1.08001 * 119.92974 * 179.97438 * 21 20 19 45 45 H 1.08994 * 109.47410 * 330.00207 * 23 22 21 46 46 H 1.08996 * 109.46668 * 209.99979 * 23 22 21 47 47 H 0.96702 * 113.99354 * 179.97438 * 24 23 22 48 48 H 1.07997 * 119.92761 * 179.74507 * 25 22 21 49 49 H 1.08001 * 120.07000 * 180.25240 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5685 2.1502 -1.2719 5 6 2.2329 1.5061 -2.4902 6 6 1.4924 2.1771 1.2254 7 7 2.0398 1.5723 2.4422 8 6 1.3321 0.4672 3.0933 9 6 0.2195 1.0173 3.9480 10 1 0.0556 2.0836 4.0006 11 6 -0.5900 0.1594 4.6620 12 7 -0.3908 -1.1389 4.5976 13 14 -1.9696 0.8414 5.7209 14 1 -1.9834 2.3230 5.6220 15 1 -3.2697 0.3020 5.2476 16 1 -1.7527 0.4411 7.1344 17 6 3.1946 2.0328 2.9628 18 8 3.7238 3.0194 2.4896 19 6 3.8175 1.3379 4.1095 20 6 5.2041 1.3536 4.2695 21 6 5.7790 0.7027 5.3413 22 6 4.9845 0.0349 6.2564 23 6 5.6196 -0.6745 7.4245 24 8 5.7226 0.2258 8.5295 25 6 3.6099 0.0110 6.1006 26 6 3.0218 0.6627 5.0363 27 1 -0.3633 0.4506 -0.9236 28 1 -0.3634 -1.0251 0.0716 29 1 -0.3633 0.5746 0.8520 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.1295 1.4426 0.0333 33 1 0.4856 2.0591 -1.3580 34 1 1.8418 3.2043 -1.2238 35 1 3.3150 1.5091 -2.3579 36 1 1.8826 0.4792 -2.5947 37 1 1.9749 2.0710 -3.3860 38 1 0.4052 2.1004 1.2389 39 1 1.7822 3.2268 1.1792 40 1 0.9142 -0.1940 2.3342 41 1 2.0282 -0.0918 3.7187 42 1 -0.9601 -1.7425 5.1002 43 1 5.8253 1.8734 3.5553 44 1 6.8517 0.7136 5.4662 45 1 6.6144 -1.0194 7.1429 46 1 5.0054 -1.5291 7.7081 47 1 6.1230 -0.1644 9.3186 48 1 2.9956 -0.5155 6.8161 49 1 1.9484 0.6468 4.9182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597160066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:48 Heat of formation + Delta-G solvation = -56.058268 kcal Electronic energy + Delta-G solvation = -28140.308861 eV Core-core repulsion = 24453.646794 eV Total energy + Delta-G solvation = -3686.662068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96014 -38.41882 -37.06914 -36.27553 -34.81062 -32.61629 -31.52838 -30.86389 -30.47952 -28.54962 -27.11285 -25.99988 -24.07918 -23.13831 -22.97679 -22.04207 -21.15086 -19.23077 -18.36318 -17.41811 -16.83562 -16.45790 -15.96850 -15.51990 -15.21494 -14.81276 -14.74545 -14.59992 -14.07838 -13.78130 -13.46984 -13.28743 -13.07573 -13.00699 -12.75184 -12.60669 -12.35418 -12.16506 -11.97044 -11.68279 -11.35721 -11.29622 -11.16469 -11.06828 -10.93914 -10.82055 -10.79685 -10.28178 -10.17257 -10.11077 -10.01720 -9.98086 -9.73195 -9.68624 -9.03020 -8.72848 -8.42303 -8.11197 -7.66613 -6.30328 -4.39122 1.38936 1.94041 3.15946 3.25727 3.30141 3.46041 3.91102 4.20197 4.29586 4.66636 4.99691 5.08676 5.10743 5.16517 5.17479 5.27554 5.36131 5.44461 5.52052 5.56731 5.58245 5.68489 5.74599 5.95574 5.98565 6.02285 6.09033 6.14418 6.16502 6.19976 6.21246 6.39373 6.41751 6.46134 6.56547 6.61371 6.65600 6.69736 6.81575 6.85179 6.95189 7.02927 7.11757 7.23769 7.47931 7.56383 7.61440 7.66273 7.93392 8.33709 8.71009 9.00609 9.29102 10.73566 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.005232 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.662254 B = 5350.535653 C = 7490.961352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.118 4.118 5 C -0.149 4.149 6 C 0.121 3.879 7 N -0.583 5.583 8 C 0.197 3.803 9 C -0.543 4.543 10 H 0.065 0.935 11 C 0.070 3.930 12 N -0.880 5.880 13 Si 0.893 3.107 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.555 3.445 18 O -0.571 6.571 19 C -0.126 4.126 20 C -0.075 4.075 21 C -0.127 4.127 22 C -0.083 4.083 23 C 0.118 3.882 24 O -0.566 6.566 25 C -0.113 4.113 26 C -0.095 4.095 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.267 0.733 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.375 0.625 48 H 0.123 0.877 49 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -1.779 -2.456 7.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.156 4.156 5 C -0.206 4.206 6 C -0.002 4.002 7 N -0.312 5.312 8 C 0.078 3.922 9 C -0.581 4.581 10 H 0.083 0.917 11 C -0.135 4.135 12 N -0.517 5.517 13 Si 0.720 3.280 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.206 1.206 17 C 0.344 3.656 18 O -0.453 6.453 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.145 4.145 22 C -0.084 4.084 23 C 0.041 3.959 24 O -0.371 6.371 25 C -0.131 4.131 26 C -0.112 4.112 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.222 0.778 48 H 0.141 0.859 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.920 -1.065 -3.084 7.651 hybrid contribution -0.528 -0.286 1.057 1.216 sum 6.392 -1.351 -2.027 6.840 Atomic orbital electron populations 1.21909 0.95778 1.01779 1.01802 1.21602 0.96423 0.96012 1.01613 1.21565 1.00290 0.95710 0.94395 1.21534 1.00700 0.99328 0.94080 1.21772 1.00604 1.00758 0.97482 1.21438 0.98980 0.96841 0.82983 1.48016 1.21702 1.35889 1.25556 1.20531 0.92503 0.84927 0.94222 1.21515 1.14552 0.94134 1.27881 0.91696 1.24964 0.97283 0.94724 0.96512 1.69938 1.38914 1.01822 1.41011 0.86500 0.81738 0.79589 0.80181 1.19482 1.20720 1.20604 1.18322 0.80922 0.83638 0.82713 1.90655 1.64508 1.26622 1.63545 1.20042 0.94007 1.01510 0.97377 1.21088 0.93720 0.97282 0.97282 1.20755 0.99167 0.99307 0.95276 1.19750 0.94168 0.99243 0.95220 1.21013 0.98639 0.90967 0.85322 1.86616 1.85381 1.41164 1.23971 1.21083 0.93349 1.00426 0.98279 1.23473 1.05818 0.91001 0.90949 0.93533 0.93242 0.90834 0.92943 0.91134 0.91588 0.91549 0.92256 0.93030 0.92649 0.93310 0.89764 0.91122 0.93255 0.91759 0.92299 0.85750 0.86352 0.93072 0.92716 0.77838 0.85907 0.78041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 8.47 37.16 0.31 -2.12 16 2 C -0.12 -1.89 4.92 -26.73 -0.13 -2.02 16 3 C -0.10 -1.60 2.36 -90.62 -0.21 -1.81 16 4 C -0.12 -1.58 5.23 -26.73 -0.14 -1.72 16 5 C -0.15 -1.74 9.55 37.15 0.35 -1.38 16 6 C 0.12 2.24 4.68 -4.04 -0.02 2.22 16 7 N -0.58 -12.27 2.29 -176.18 -0.40 -12.67 16 8 C 0.20 4.43 3.86 -5.19 -0.02 4.41 16 9 C -0.54 -13.24 7.48 -34.44 -0.26 -13.50 16 10 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 11 C 0.07 1.72 5.34 -17.82 -0.10 1.63 16 12 N -0.88 -22.33 13.29 55.43 0.74 -21.59 16 13 Si 0.89 19.65 29.54 -169.99 -5.02 14.63 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.55 12.28 7.46 -12.33 -0.09 12.19 16 18 O -0.57 -13.56 16.27 5.32 0.09 -13.47 16 19 C -0.13 -2.63 5.58 -104.97 -0.59 -3.21 16 20 C -0.07 -1.37 9.60 -39.18 -0.38 -1.74 16 21 C -0.13 -2.06 9.68 -39.64 -0.38 -2.44 16 22 C -0.08 -1.37 5.52 -104.53 -0.58 -1.95 16 23 C 0.12 1.49 7.17 36.01 0.26 1.75 16 24 O -0.57 -7.34 13.64 -35.23 -0.48 -7.82 16 25 C -0.11 -2.11 9.68 -39.64 -0.38 -2.49 16 26 C -0.10 -2.00 7.48 -39.18 -0.29 -2.29 16 27 H 0.05 0.63 6.56 -51.93 -0.34 0.29 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.31 5.35 -51.93 -0.28 1.04 16 30 H 0.05 0.74 6.63 -51.93 -0.34 0.40 16 31 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.05 0.63 6.82 -51.93 -0.35 0.28 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.56 5.97 -51.93 -0.31 1.25 16 39 H 0.07 1.36 7.35 -51.93 -0.38 0.97 16 40 H 0.05 1.13 4.43 -51.93 -0.23 0.90 16 41 H 0.07 1.52 4.05 -51.96 -0.21 1.31 16 42 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.12 2.14 7.93 -52.49 -0.42 1.73 16 44 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 46 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 47 H 0.38 2.74 9.12 45.56 0.42 3.16 16 48 H 0.12 2.17 8.06 -52.49 -0.42 1.74 16 49 H 0.20 4.69 3.08 -52.49 -0.16 4.52 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -28.63 378.96 -8.60 -37.22 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.59 Total: 12.47 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.64 Total: -14.48 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.33 Total: -34.27 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.39 Total: -21.29 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.63 -8.60 -37.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.834 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds