Wall clock time and date at job start Tue Mar 31 2020 12:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 C 1.53001 * 109.47046 * 298.15152 * 3 2 1 5 5 C 1.52994 * 109.47214 * 294.11831 * 4 3 2 6 6 C 1.53008 * 109.46941 * 58.14856 * 3 2 1 7 7 N 1.46497 * 109.46791 * 65.00030 * 6 3 2 8 8 C 1.46500 * 120.00322 * 270.00106 * 7 6 3 9 9 C 1.50697 * 109.46851 * 278.60457 * 8 7 6 10 10 H 1.08005 * 120.00635 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99936 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99642 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47548 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47121 * 120.00477 * 13 11 9 16 16 H 1.48501 * 109.46736 * 240.00103 * 13 11 9 17 17 C 1.34780 * 119.99719 * 90.00341 * 7 6 3 18 18 O 1.21547 * 120.00016 * 6.12946 * 17 7 6 19 19 C 1.47845 * 119.99806 * 186.13238 * 17 7 6 20 20 C 1.39585 * 120.14469 * 149.92910 * 19 17 7 21 21 C 1.37951 * 119.85189 * 180.02562 * 20 19 17 22 22 C 1.38364 * 120.14794 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.85228 * 179.97438 * 22 21 20 24 24 O 1.42899 * 109.46583 * 90.00346 * 23 22 21 25 25 C 1.38358 * 120.29025 * 0.23085 * 22 21 20 26 26 C 1.37962 * 120.14539 * 359.49093 * 25 22 21 27 27 H 1.08998 * 109.47071 * 63.99157 * 1 2 3 28 28 H 1.08997 * 109.47375 * 183.99783 * 1 2 3 29 29 H 1.08999 * 109.46846 * 303.99278 * 1 2 3 30 30 H 1.09007 * 109.46931 * 240.00094 * 2 1 3 31 31 H 1.09000 * 109.47332 * 120.00041 * 2 1 3 32 32 H 1.08998 * 109.47588 * 178.14469 * 3 2 1 33 33 H 1.09007 * 109.46721 * 54.11775 * 4 3 2 34 34 H 1.09003 * 109.47010 * 174.11665 * 4 3 2 35 35 H 1.09011 * 109.47024 * 305.53607 * 5 4 3 36 36 H 1.08996 * 109.47666 * 65.53560 * 5 4 3 37 37 H 1.09002 * 109.47613 * 185.54112 * 5 4 3 38 38 H 1.09000 * 109.46706 * 305.00380 * 6 3 2 39 39 H 1.08997 * 109.47140 * 185.00048 * 6 3 2 40 40 H 1.08998 * 109.46840 * 38.60557 * 8 7 6 41 41 H 1.08998 * 109.47041 * 158.60792 * 8 7 6 42 42 H 0.97001 * 119.99705 * 179.97438 * 12 11 9 43 43 H 1.07990 * 120.06840 * 359.97438 * 20 19 17 44 44 H 1.08001 * 119.92974 * 179.97438 * 21 20 19 45 45 H 1.08994 * 109.47410 * 330.00207 * 23 22 21 46 46 H 1.08996 * 109.46668 * 209.99979 * 23 22 21 47 47 H 0.96702 * 113.99354 * 179.97438 * 24 23 22 48 48 H 1.07997 * 119.92761 * 179.74507 * 25 22 21 49 49 H 1.08001 * 120.07000 * 180.25240 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5685 2.1502 -1.2719 5 6 2.2329 1.5061 -2.4902 6 6 1.4924 2.1771 1.2254 7 7 2.0398 1.5723 2.4422 8 6 1.3321 0.4672 3.0933 9 6 0.2195 1.0173 3.9480 10 1 0.0556 2.0836 4.0006 11 6 -0.5900 0.1594 4.6620 12 7 -0.3908 -1.1389 4.5976 13 14 -1.9696 0.8414 5.7209 14 1 -1.9834 2.3230 5.6220 15 1 -3.2697 0.3020 5.2476 16 1 -1.7527 0.4411 7.1344 17 6 3.1946 2.0328 2.9628 18 8 3.7238 3.0194 2.4896 19 6 3.8175 1.3379 4.1095 20 6 5.2041 1.3536 4.2695 21 6 5.7790 0.7027 5.3413 22 6 4.9845 0.0349 6.2564 23 6 5.6196 -0.6745 7.4245 24 8 5.7226 0.2258 8.5295 25 6 3.6099 0.0110 6.1006 26 6 3.0218 0.6627 5.0363 27 1 -0.3633 0.4506 -0.9236 28 1 -0.3634 -1.0251 0.0716 29 1 -0.3633 0.5746 0.8520 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.1295 1.4426 0.0333 33 1 0.4856 2.0591 -1.3580 34 1 1.8418 3.2043 -1.2238 35 1 3.3150 1.5091 -2.3579 36 1 1.8826 0.4792 -2.5947 37 1 1.9749 2.0710 -3.3860 38 1 0.4052 2.1004 1.2389 39 1 1.7822 3.2268 1.1792 40 1 0.9142 -0.1940 2.3342 41 1 2.0282 -0.0918 3.7187 42 1 -0.9601 -1.7425 5.1002 43 1 5.8253 1.8734 3.5553 44 1 6.8517 0.7136 5.4662 45 1 6.6144 -1.0194 7.1429 46 1 5.0054 -1.5291 7.7081 47 1 6.1230 -0.1644 9.3186 48 1 2.9956 -0.5155 6.8161 49 1 1.9484 0.6468 4.9182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597160066.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:47 Heat of formation + Delta-G solvation = -72.236772 kcal Electronic energy + Delta-G solvation = -28141.010414 eV Core-core repulsion = 24453.646794 eV Total energy + Delta-G solvation = -3687.363620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55780 -39.79899 -38.46795 -37.43245 -36.44761 -34.45569 -32.87030 -32.08001 -31.91901 -30.07698 -28.77878 -27.25032 -25.49822 -24.88662 -24.19414 -23.46671 -22.53265 -20.72018 -19.79356 -18.69534 -18.34056 -18.11712 -17.52783 -16.86365 -16.60328 -16.39726 -16.23498 -16.07531 -15.50263 -15.23682 -14.74777 -14.67903 -14.45582 -14.34632 -14.24132 -13.92614 -13.72973 -13.68244 -13.39089 -13.01252 -12.94823 -12.76041 -12.59721 -12.48994 -12.41751 -12.18337 -12.08700 -12.00406 -11.69952 -11.50804 -11.38973 -11.27531 -11.22462 -10.94537 -10.76998 -10.53586 -9.88480 -9.64088 -9.37628 -8.21812 -6.35812 -0.07349 0.49694 1.37943 1.43181 1.51967 1.84143 2.27139 2.42454 2.82195 3.06697 3.57035 3.71431 3.90437 3.93509 3.96524 4.02925 4.07736 4.22427 4.34928 4.39920 4.44218 4.49967 4.57873 4.60161 4.62146 4.72349 4.79127 4.87223 4.90792 4.93197 4.98111 5.00471 5.07608 5.14296 5.17761 5.23281 5.34191 5.38668 5.40261 5.44547 5.49963 5.54687 5.63688 5.65898 5.71180 5.86567 6.02442 6.05573 6.55027 6.79713 6.96113 7.24429 7.37254 8.81621 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009452 B = 0.005232 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.662254 B = 5350.535653 C = 7490.961352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.090 4.090 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.117 3.883 7 N -0.583 5.583 8 C 0.213 3.787 9 C -0.547 4.547 10 H 0.047 0.953 11 C 0.038 3.962 12 N -0.901 5.901 13 Si 0.944 3.056 14 H -0.277 1.277 15 H -0.275 1.275 16 H -0.276 1.276 17 C 0.547 3.453 18 O -0.596 6.596 19 C -0.153 4.153 20 C -0.079 4.079 21 C -0.116 4.116 22 C -0.078 4.078 23 C 0.120 3.880 24 O -0.588 6.588 25 C -0.125 4.125 26 C -0.115 4.115 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.270 0.730 43 H 0.132 0.868 44 H 0.158 0.842 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.400 0.600 48 H 0.127 0.873 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 -2.486 -2.321 8.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.109 4.109 4 C -0.152 4.152 5 C -0.202 4.202 6 C -0.005 4.005 7 N -0.310 5.310 8 C 0.094 3.906 9 C -0.585 4.585 10 H 0.065 0.935 11 C -0.165 4.165 12 N -0.539 5.539 13 Si 0.770 3.230 14 H -0.202 1.202 15 H -0.201 1.201 16 H -0.201 1.201 17 C 0.337 3.663 18 O -0.480 6.480 19 C -0.155 4.155 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.079 4.079 23 C 0.043 3.957 24 O -0.398 6.398 25 C -0.143 4.143 26 C -0.133 4.133 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.150 0.850 44 H 0.175 0.825 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.251 0.749 48 H 0.144 0.856 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.080 -1.787 -2.940 8.782 hybrid contribution -0.824 -0.062 1.081 1.361 sum 7.256 -1.849 -1.859 7.716 Atomic orbital electron populations 1.21829 0.95452 1.01391 1.01881 1.21529 0.96563 0.95676 1.01268 1.21456 0.99089 0.95873 0.94507 1.21515 1.01343 0.99121 0.93225 1.21745 1.00175 1.01161 0.97150 1.21590 0.98936 0.96596 0.83395 1.48058 1.21461 1.35418 1.26099 1.20257 0.91790 0.84995 0.93596 1.21525 1.15304 0.93200 1.28503 0.93517 1.25464 0.98839 0.94914 0.97256 1.69994 1.39684 1.02476 1.41701 0.85715 0.79754 0.78501 0.79045 1.20186 1.20088 1.20136 1.18681 0.81026 0.83493 0.83101 1.90614 1.65202 1.27627 1.64605 1.20062 0.95300 1.02859 0.97320 1.21290 0.92654 0.97538 0.98268 1.21180 1.01072 0.97437 0.93726 1.20224 0.93225 0.97997 0.96428 1.21045 1.00236 0.90396 0.84036 1.86534 1.86009 1.42043 1.25180 1.21204 0.94901 1.00460 0.97718 1.23180 1.04713 0.92834 0.92562 0.90960 0.93440 0.93529 0.90682 0.93989 0.93196 0.90659 0.92274 0.93405 0.92117 0.91412 0.89946 0.92123 0.93876 0.92543 0.92030 0.85015 0.82466 0.89825 0.91474 0.74899 0.85553 0.80665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 8.47 71.98 0.61 -4.02 16 2 C -0.11 -3.59 4.92 30.59 0.15 -3.44 16 3 C -0.09 -2.90 2.36 -10.79 -0.03 -2.93 16 4 C -0.11 -2.91 5.23 30.59 0.16 -2.75 16 5 C -0.15 -3.08 9.55 71.98 0.69 -2.39 16 6 C 0.12 4.56 4.68 86.38 0.40 4.96 16 7 N -0.58 -25.86 2.29 -829.58 -1.90 -27.76 16 8 C 0.21 10.10 3.86 85.63 0.33 10.43 16 9 C -0.55 -27.89 7.48 25.60 0.19 -27.70 16 10 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 11 C 0.04 1.92 5.34 84.66 0.45 2.37 16 12 N -0.90 -46.64 13.29 21.45 0.28 -46.36 16 13 Si 0.94 40.94 29.54 68.60 2.03 42.96 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 C 0.55 25.35 7.46 86.79 0.65 26.00 16 18 O -0.60 -29.43 16.27 -3.86 -0.06 -29.49 16 19 C -0.15 -6.54 5.58 -20.09 -0.11 -6.66 16 20 C -0.08 -2.84 9.60 22.53 0.22 -2.63 16 21 C -0.12 -3.49 9.68 22.23 0.22 -3.28 16 22 C -0.08 -2.42 5.52 -19.80 -0.11 -2.53 16 23 C 0.12 2.61 7.17 71.24 0.51 3.12 16 24 O -0.59 -13.31 13.64 -148.98 -2.03 -15.34 16 25 C -0.12 -4.65 9.68 22.23 0.22 -4.44 16 26 C -0.12 -5.02 7.48 22.53 0.17 -4.85 16 27 H 0.07 1.85 6.56 -2.39 -0.02 1.84 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.70 5.35 -2.39 -0.01 1.69 16 30 H 0.07 2.04 6.63 -2.38 -0.02 2.03 16 31 H 0.04 1.57 5.89 -2.39 -0.01 1.56 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.79 6.28 -2.38 -0.01 1.78 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.06 1.23 6.82 -2.39 -0.02 1.21 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 3.20 5.97 -2.39 -0.01 3.18 16 39 H 0.06 2.45 7.35 -2.39 -0.02 2.43 16 40 H 0.04 2.09 4.43 -2.39 -0.01 2.08 16 41 H 0.06 2.82 4.05 -2.42 -0.01 2.81 16 42 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 43 H 0.13 4.49 7.93 -2.92 -0.02 4.46 16 44 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 45 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 46 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 47 H 0.40 4.42 9.12 -74.06 -0.68 3.75 16 48 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 49 H 0.18 8.59 3.08 -2.91 -0.01 8.58 16 Total: -1.00 -63.68 378.96 3.32 -60.36 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.30 Total: 36.36 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.71 Total: -20.73 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.62 Total: -74.12 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.10 Total: -44.83 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -63.68 3.32 -60.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597160066.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.876 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds