Wall clock time and date at job start Tue Mar 31 2020 12:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46859 * 2 1 4 4 C 1.53002 * 109.46971 * 184.47466 * 3 2 1 5 5 O 1.42891 * 109.47399 * 60.99738 * 4 3 2 6 6 C 1.52999 * 109.47021 * 180.99711 * 4 3 2 7 7 C 1.52997 * 109.47143 * 304.99856 * 6 4 3 8 8 C 1.53001 * 109.46817 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.46699 * 300.99349 * 4 3 2 10 10 N 1.46501 * 109.47140 * 181.50763 * 9 4 3 11 11 C 1.34773 * 120.00267 * 184.09669 * 10 9 4 12 12 O 1.21613 * 120.00126 * 0.02562 * 11 10 9 13 13 C 1.47433 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.39225 * 120.28927 * 355.76839 * 13 11 10 15 15 C 1.38216 * 120.09239 * 180.27684 * 14 13 11 16 16 C 1.38825 * 120.67966 * 359.69372 * 15 14 13 17 17 C 1.37600 * 120.56829 * 359.97438 * 16 15 14 18 18 C 1.40704 * 119.88041 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32751 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00013 * 216.44622 * 19 18 17 21 21 C 1.40276 * 119.99986 * 36.44652 * 19 18 17 22 22 N 1.30626 * 120.00328 * 190.59915 * 21 19 18 23 23 Si 1.86803 * 119.99982 * 10.59775 * 21 19 18 24 24 H 1.48500 * 109.47120 * 267.17085 * 23 21 19 25 25 H 1.48502 * 109.47219 * 27.16537 * 23 21 19 26 26 H 1.48497 * 109.47330 * 147.16818 * 23 21 19 27 27 H 1.09005 * 109.46775 * 299.99711 * 1 2 3 28 28 H 1.08996 * 109.47829 * 59.99815 * 1 2 3 29 29 H 1.09003 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46775 * 240.00289 * 2 1 3 31 31 H 1.08989 * 109.47446 * 120.00236 * 2 1 3 32 32 H 1.08994 * 109.47286 * 64.46848 * 3 2 1 33 33 H 1.09004 * 109.47146 * 304.46737 * 3 2 1 34 34 H 0.96703 * 113.99957 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.47243 * 65.00150 * 6 4 3 36 36 H 1.08999 * 109.47199 * 184.99141 * 6 4 3 37 37 H 1.08997 * 109.47035 * 299.99819 * 7 6 4 38 38 H 1.08994 * 109.47302 * 60.00193 * 7 6 4 39 39 H 1.09002 * 109.47080 * 179.97438 * 8 7 6 40 40 H 1.09006 * 109.47171 * 299.99559 * 8 7 6 41 41 H 1.08995 * 109.47913 * 59.99917 * 8 7 6 42 42 H 1.09001 * 109.46847 * 61.51604 * 9 4 3 43 43 H 1.08995 * 109.47267 * 301.51020 * 9 4 3 44 44 H 0.97011 * 119.99563 * 4.09366 * 10 9 4 45 45 H 1.08002 * 119.94874 * 359.97438 * 14 13 11 46 46 H 1.08000 * 119.65702 * 179.71189 * 15 14 13 47 47 H 1.07993 * 119.71725 * 180.02562 * 16 15 14 48 48 H 1.08001 * 120.05842 * 180.02562 * 17 16 15 49 49 H 0.97000 * 120.00378 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5658 1.4440 -0.1125 5 8 3.9536 0.8222 -1.3392 6 6 4.0776 2.8857 -0.0875 7 6 3.3840 3.6922 -1.1872 8 6 3.8964 5.1337 -1.1625 9 6 4.1646 0.6698 1.0635 10 7 5.6266 0.7017 0.9754 11 6 6.3704 0.0127 1.8633 12 8 5.8280 -0.6360 2.7374 13 6 7.8417 0.0445 1.7743 14 6 8.4675 0.7115 0.7246 15 6 9.8470 0.7339 0.6419 16 6 10.6245 0.1007 1.6021 17 6 10.0351 -0.5608 2.6549 18 6 8.6326 -0.5985 2.7623 19 6 8.0192 -1.2736 3.8360 20 1 7.0966 -1.8125 3.6787 21 6 8.6069 -1.2459 5.1095 22 7 8.1608 -2.0326 6.0520 23 14 10.0277 -0.0840 5.4574 24 1 11.3130 -0.7882 5.2181 25 1 9.9345 1.0948 4.5591 26 1 9.9651 0.3650 6.8715 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.7435 1.9327 0.9273 33 1 1.6127 1.9789 -0.8473 34 1 4.9101 0.7875 -1.4774 35 1 3.8596 3.3319 0.8829 36 1 5.1544 2.8919 -0.2565 37 1 3.6021 3.2461 -2.1574 38 1 2.3073 3.6860 -1.0181 39 1 3.4026 5.7083 -1.9462 40 1 3.6786 5.5802 -0.1922 41 1 4.9731 5.1397 -1.3318 42 1 3.8212 -0.3642 1.0302 43 1 3.8469 1.1283 1.9998 44 1 6.0593 1.2188 0.2780 45 1 7.8739 1.2080 -0.0289 46 1 10.3249 1.2494 -0.1779 47 1 11.7011 0.1283 1.5225 48 1 10.6479 -1.0502 3.3975 49 1 8.5669 -2.0132 6.9327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601208936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:51 Heat of formation + Delta-G solvation = -113.778682 kcal Electronic energy + Delta-G solvation = -27572.009613 eV Core-core repulsion = 23882.844601 eV Total energy + Delta-G solvation = -3689.165013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16901 -39.98146 -38.58115 -35.74312 -35.31919 -35.02220 -34.96324 -32.30473 -32.12387 -30.82243 -27.72863 -27.43374 -26.68291 -24.03432 -23.07378 -22.64526 -22.44056 -21.22166 -20.94602 -19.50989 -18.64862 -17.43020 -17.25663 -16.86524 -16.35967 -16.01236 -15.93372 -15.81716 -15.62271 -15.35475 -15.10798 -14.80083 -14.60127 -14.40607 -14.04454 -13.95247 -13.78926 -13.60092 -13.32942 -13.13098 -12.94077 -12.70258 -12.66340 -12.52726 -12.48609 -12.20545 -12.15781 -12.03964 -11.91342 -11.62666 -11.55723 -11.47480 -11.18524 -11.09374 -10.73716 -10.34607 -10.03996 -9.52551 -9.41565 -8.82993 -6.49520 0.33570 0.83598 1.22833 1.36348 1.45361 2.08944 2.24846 2.35699 2.70747 3.23833 3.53254 3.57969 3.69262 3.84696 4.15889 4.20085 4.23795 4.29674 4.30912 4.36564 4.43958 4.51782 4.62107 4.67048 4.71416 4.77877 4.79323 4.84979 4.90454 4.97868 5.00971 5.02746 5.04064 5.08647 5.24606 5.29147 5.30393 5.36883 5.41848 5.46012 5.48413 5.52378 5.57001 5.68192 5.86382 5.96028 6.26793 6.46758 6.63659 6.73708 6.78220 6.88743 7.61680 8.21472 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.003626 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.032389 B = 7720.867266 C = 8770.458140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.101 4.101 4 C 0.139 3.861 5 O -0.557 6.557 6 C -0.144 4.144 7 C -0.116 4.116 8 C -0.153 4.153 9 C 0.099 3.901 10 N -0.722 5.722 11 C 0.554 3.446 12 O -0.578 6.578 13 C -0.266 4.266 14 C -0.038 4.038 15 C -0.229 4.229 16 C -0.062 4.062 17 C -0.247 4.247 18 C 0.101 3.899 19 C -0.452 4.452 20 H 0.071 0.929 21 C 0.036 3.964 22 N -0.850 5.850 23 Si 0.968 3.032 24 H -0.248 1.248 25 H -0.248 1.248 26 H -0.280 1.280 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.382 0.618 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.405 0.595 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.136 0.864 48 H 0.101 0.899 49 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.557 13.483 -15.254 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.139 4.139 4 C 0.098 3.902 5 O -0.364 6.364 6 C -0.182 4.182 7 C -0.153 4.153 8 C -0.211 4.211 9 C -0.026 4.026 10 N -0.378 5.378 11 C 0.347 3.653 12 O -0.459 6.459 13 C -0.271 4.271 14 C -0.057 4.057 15 C -0.248 4.248 16 C -0.080 4.080 17 C -0.267 4.267 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.089 0.911 21 C -0.178 4.178 22 N -0.477 5.477 23 Si 0.790 3.210 24 H -0.173 1.173 25 H -0.172 1.172 26 H -0.207 1.207 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.231 0.769 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.243 0.757 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.154 0.846 48 H 0.119 0.881 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.668 12.829 -14.447 20.787 hybrid contribution 1.067 -0.169 0.856 1.378 sum -6.601 12.660 -13.591 19.712 Atomic orbital electron populations 1.21751 0.94677 1.01847 1.02274 1.21526 0.96703 0.96887 1.01405 1.21647 0.90918 0.97621 1.03682 1.21380 0.95832 0.90930 0.82043 1.86529 1.28916 1.82116 1.38816 1.22284 1.00964 0.94150 1.00758 1.21476 1.00344 0.95045 0.98428 1.21791 1.01303 0.96152 1.01818 1.22057 0.80108 1.00854 0.99547 1.45671 1.06239 1.52310 1.33594 1.18556 0.87912 0.78305 0.80565 1.90741 1.74561 1.43999 1.36590 1.19798 0.91409 1.11767 1.04109 1.21209 0.95482 0.94331 0.94643 1.20956 0.93134 1.08212 1.02484 1.21260 1.00185 0.93704 0.92852 1.21259 0.93915 1.09111 1.02366 1.17808 0.92156 0.88145 0.92232 1.19959 1.08260 1.26269 0.93619 0.91145 1.27121 0.99187 0.95940 0.95566 1.69629 1.40030 1.33151 1.04859 0.85478 0.78152 0.80134 0.77251 1.17273 1.17200 1.20709 0.92365 0.91741 0.92909 0.92159 0.93761 0.89895 0.89043 0.76948 0.91059 0.91084 0.91463 0.91256 0.92065 0.92971 0.92736 0.92939 0.92683 0.75690 0.84102 0.83636 0.84603 0.88148 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.86 16 2 C -0.13 -2.75 5.34 30.60 0.16 -2.59 16 3 C -0.10 -1.90 3.97 30.60 0.12 -1.77 16 4 C 0.14 2.87 0.51 -10.79 -0.01 2.86 16 5 O -0.56 -11.51 11.80 -148.98 -1.76 -13.27 16 6 C -0.14 -2.46 4.21 30.59 0.13 -2.33 16 7 C -0.12 -1.64 5.34 30.59 0.16 -1.48 16 8 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 9 C 0.10 2.92 4.40 86.38 0.38 3.30 16 10 N -0.72 -23.13 5.00 -466.36 -2.33 -25.46 16 11 C 0.55 25.33 7.72 86.67 0.67 26.00 16 12 O -0.58 -32.96 13.54 -4.07 -0.06 -33.01 16 13 C -0.27 -12.10 5.92 -19.70 -0.12 -12.22 16 14 C -0.04 -1.30 9.52 22.50 0.21 -1.09 16 15 C -0.23 -7.34 10.03 22.41 0.22 -7.12 16 16 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 17 C -0.25 -11.29 7.01 22.72 0.16 -11.13 16 18 C 0.10 5.25 5.03 -21.11 -0.11 5.15 16 19 C -0.45 -27.35 8.31 23.42 0.19 -27.16 16 20 H 0.07 4.89 5.97 -2.91 -0.02 4.87 16 21 C 0.04 2.03 5.47 85.37 0.47 2.50 16 22 N -0.85 -50.03 13.92 21.88 0.30 -49.72 16 23 Si 0.97 43.82 24.52 68.60 1.68 45.51 16 24 H -0.25 -10.25 6.77 99.48 0.67 -9.58 16 25 H -0.25 -11.25 6.73 99.48 0.67 -10.58 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.43 7.58 -2.38 -0.02 1.41 16 31 H 0.04 1.13 6.70 -2.39 -0.02 1.11 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 1.47 6.40 -2.39 -0.02 1.46 16 34 H 0.38 6.28 8.03 -74.06 -0.59 5.69 16 35 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.15 6.85 -2.39 -0.02 1.13 16 37 H 0.07 0.99 7.82 -2.39 -0.02 0.97 16 38 H 0.07 0.93 6.37 -2.39 -0.02 0.92 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.05 1.82 6.60 -2.39 -0.02 1.80 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.40 9.72 4.48 -92.70 -0.42 9.31 16 45 H 0.14 3.39 6.42 -2.91 -0.02 3.38 16 46 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 47 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 48 H 0.10 4.59 5.03 -2.91 -0.01 4.57 16 49 H 0.29 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -74.03 377.93 2.03 -71.99 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.12 Total: 36.21 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.31 Total: -32.24 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.03 Total: -75.19 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -1.81 Total: -46.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.68 Total: 45.51 kcal Total: -74.03 2.03 -71.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601208936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.787 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds