Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.53007 * 109.47424 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46796 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47002 * 60.00143 * 3 2 1 7 7 C 1.53005 * 109.47074 * 59.99950 * 6 3 2 8 8 O 1.42902 * 109.46925 * 179.97438 * 7 6 3 9 9 C 1.52995 * 109.47248 * 300.00055 * 3 2 1 10 10 N 1.46494 * 109.47394 * 299.99813 * 9 3 2 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 3 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39235 * 120.28378 * 356.68142 * 13 11 10 15 15 C 1.38213 * 120.09167 * 180.28304 * 14 13 11 16 16 C 1.38829 * 120.67951 * 359.69388 * 15 14 13 17 17 C 1.37601 * 120.56944 * 0.02562 * 16 15 14 18 18 C 1.40712 * 119.87956 * 0.02562 * 17 16 15 19 19 C 1.40885 * 120.32562 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99856 * 145.79790 * 19 18 17 21 21 C 1.40271 * 120.00127 * 325.78891 * 19 18 17 22 22 N 1.30625 * 120.00346 * 340.75265 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 160.74583 * 21 19 18 24 24 H 1.48499 * 109.47325 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47377 * 299.99957 * 23 21 19 26 26 H 1.48501 * 109.47284 * 60.00488 * 23 21 19 27 27 H 1.08994 * 109.47274 * 59.99580 * 1 2 3 28 28 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47006 * 299.99944 * 1 2 3 30 30 H 1.09009 * 109.47346 * 240.00353 * 2 1 3 31 31 H 1.09004 * 109.47441 * 120.00520 * 2 1 3 32 32 H 1.08997 * 109.46911 * 300.00728 * 4 3 2 33 33 H 1.08998 * 109.46537 * 60.00541 * 4 3 2 34 34 H 1.08999 * 109.47530 * 299.99569 * 5 4 3 35 35 H 1.08998 * 109.47275 * 60.00822 * 5 4 3 36 36 H 1.09005 * 109.46583 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.47270 * 180.02562 * 6 3 2 38 38 H 1.08999 * 109.47133 * 300.00391 * 6 3 2 39 39 H 1.09004 * 109.47249 * 300.00229 * 7 6 3 40 40 H 1.08999 * 109.46781 * 60.00225 * 7 6 3 41 41 H 0.96699 * 113.99571 * 180.02562 * 8 7 6 42 42 H 1.09004 * 109.47250 * 179.97438 * 9 3 2 43 43 H 1.09005 * 109.47069 * 59.99847 * 9 3 2 44 44 H 0.96994 * 119.99831 * 359.97438 * 10 9 3 45 45 H 1.08001 * 119.94893 * 359.97438 * 14 13 11 46 46 H 1.08002 * 119.66077 * 179.72069 * 15 14 13 47 47 H 1.08002 * 119.72114 * 180.02562 * 16 15 14 48 48 H 1.08002 * 120.06118 * 180.02562 * 17 16 15 49 49 H 0.97001 * 119.99430 * 354.82448 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 6 1.5301 2.1637 1.2493 7 6 2.0401 1.4424 2.4985 8 8 1.5642 2.1164 3.6653 9 6 1.5301 2.1637 -1.2492 10 7 2.0183 1.4732 -2.4454 11 6 1.6923 1.9335 -3.6694 12 8 0.9932 2.9223 -3.7810 13 6 2.1833 1.2382 -4.8733 14 6 3.0400 0.1471 -4.7536 15 6 3.5025 -0.4981 -5.8850 16 6 3.1169 -0.0744 -7.1496 17 6 2.2669 0.9972 -7.2997 18 6 1.7825 1.6721 -6.1640 19 6 0.9121 2.7707 -6.3068 20 1 0.1366 2.9439 -5.5753 21 6 1.0529 3.6398 -7.3988 22 7 2.1765 3.6763 -8.0639 23 14 -0.3667 4.7447 -7.9021 24 1 0.0333 5.5605 -9.0767 25 1 -1.5422 3.9097 -8.2573 26 1 -0.7200 5.6421 -6.7729 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.9330 0.9287 0.8908 33 1 3.9337 0.9286 -0.8892 34 1 3.7171 3.3991 -0.8887 35 1 3.7164 3.3985 0.8913 36 1 5.1700 2.8849 0.0013 37 1 1.8930 3.1915 1.2491 38 1 0.4401 2.1637 1.2493 39 1 1.6767 0.4147 2.4985 40 1 3.1301 1.4424 2.4984 41 1 1.8499 1.7130 4.4964 42 1 1.8931 3.1916 -1.2490 43 1 0.4400 2.1638 -1.2492 44 1 2.5762 0.6848 -2.3564 45 1 3.3474 -0.1923 -3.7755 46 1 4.1703 -1.3409 -5.7843 47 1 3.4874 -0.5902 -8.0232 48 1 1.9720 1.3196 -8.2874 49 1 2.9380 3.1589 -7.7583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601326000.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = -114.038236 kcal Electronic energy + Delta-G solvation = -27880.665173 eV Core-core repulsion = 24191.488905 eV Total energy + Delta-G solvation = -3689.176268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.26547 -40.06545 -38.61194 -37.31950 -35.90999 -34.64060 -33.21416 -31.90202 -31.22291 -30.59367 -28.59321 -27.05323 -26.38939 -24.52955 -23.39023 -22.88949 -22.67384 -21.17643 -20.05824 -19.17619 -18.58323 -17.78424 -17.06125 -16.82721 -16.56246 -16.51354 -15.98811 -15.80958 -15.56187 -15.27763 -15.06794 -14.70179 -14.56703 -14.39527 -14.01429 -13.84534 -13.74609 -13.59423 -13.15356 -13.09828 -12.89992 -12.69915 -12.66804 -12.49679 -12.43906 -12.31293 -12.02760 -11.95394 -11.81423 -11.49422 -11.36635 -11.34845 -11.09487 -10.96533 -10.67298 -10.35116 -9.93904 -9.59430 -9.49240 -9.10067 -6.46147 0.41009 0.90640 1.45138 1.60731 1.75277 2.27205 2.30239 2.42613 2.74506 3.34242 3.56490 3.62355 3.72809 3.85392 4.13785 4.18367 4.27689 4.33711 4.39764 4.42736 4.44485 4.49973 4.56222 4.60333 4.63513 4.64527 4.74928 4.84380 4.87931 4.88595 5.01694 5.07695 5.09071 5.14319 5.16202 5.21357 5.31275 5.37616 5.38743 5.42922 5.57020 5.61194 5.66591 5.71874 5.90027 5.97086 6.20626 6.33881 6.70090 6.86202 6.93854 6.96325 7.63974 8.04307 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.003513 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.014107 B = 7967.886569 C = 8819.702383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.051 4.051 4 C -0.114 4.114 5 C -0.157 4.157 6 C -0.110 4.110 7 C 0.078 3.922 8 O -0.598 6.598 9 C 0.134 3.866 10 N -0.717 5.717 11 C 0.556 3.444 12 O -0.582 6.582 13 C -0.281 4.281 14 C -0.041 4.041 15 C -0.243 4.243 16 C -0.072 4.072 17 C -0.226 4.226 18 C 0.096 3.904 19 C -0.512 4.512 20 H 0.079 0.921 21 C -0.002 4.002 22 N -0.818 5.818 23 Si 1.115 2.885 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.273 1.273 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.397 0.603 42 H 0.045 0.955 43 H 0.048 0.952 44 H 0.404 0.596 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -8.910 19.143 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.051 4.051 4 C -0.151 4.151 5 C -0.214 4.214 6 C -0.148 4.148 7 C 0.001 3.999 8 O -0.407 6.407 9 C 0.010 3.990 10 N -0.372 5.372 11 C 0.349 3.651 12 O -0.464 6.464 13 C -0.286 4.286 14 C -0.060 4.060 15 C -0.262 4.262 16 C -0.091 4.091 17 C -0.246 4.246 18 C 0.092 3.908 19 C -0.540 4.540 20 H 0.097 0.903 21 C -0.218 4.218 22 N -0.442 5.442 23 Si 0.932 3.068 24 H -0.188 1.188 25 H -0.184 1.184 26 H -0.198 1.198 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.247 0.753 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.242 0.758 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.142 0.858 48 H 0.106 0.894 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.288 -6.712 17.489 18.872 hybrid contribution 0.892 -1.419 1.065 1.986 sum 3.180 -8.131 18.554 20.505 Atomic orbital electron populations 1.21868 0.96291 1.01930 1.01318 1.21652 0.95821 0.94417 1.03190 1.20656 0.96300 0.95908 0.92242 1.21654 0.92854 0.97389 1.03194 1.21872 1.01228 0.97068 1.01273 1.21481 1.01251 0.99707 0.92387 1.22288 0.98217 0.95256 0.84141 1.86430 1.78208 1.58582 1.17471 1.21316 0.98064 0.95610 0.84022 1.45695 1.54790 1.32452 1.04260 1.18441 0.79381 0.83323 0.83963 1.90660 1.40311 1.28431 1.87030 1.19817 1.10678 1.05389 0.92709 1.21118 0.93484 0.92538 0.98813 1.20810 1.08521 1.05169 0.91691 1.21158 0.95056 0.94754 0.98120 1.21209 1.06162 1.00092 0.97087 1.17894 0.89366 0.92277 0.91253 1.21091 1.14525 1.09216 1.09165 0.90283 1.28433 1.02818 0.99022 0.91491 1.70498 1.02393 1.33822 1.37518 0.83037 0.71916 0.74775 0.77066 1.18762 1.18351 1.19838 0.94816 0.91849 0.91879 0.91910 0.88902 0.88865 0.91927 0.94942 0.91853 0.91908 0.91861 0.91755 0.91872 0.91957 0.75325 0.93644 0.93414 0.75807 0.84893 0.84477 0.85774 0.89354 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.21 71.98 0.66 -2.43 16 2 C -0.11 -1.92 4.46 30.59 0.14 -1.79 16 3 C -0.05 -1.00 0.11 -52.18 -0.01 -1.00 16 4 C -0.11 -1.96 4.46 30.60 0.14 -1.82 16 5 C -0.16 -3.21 9.21 71.98 0.66 -2.54 16 6 C -0.11 -2.11 3.93 30.60 0.12 -1.99 16 7 C 0.08 1.08 6.34 71.98 0.46 1.53 16 8 O -0.60 -9.47 13.66 -148.98 -2.04 -11.51 16 9 C 0.13 4.02 3.86 86.38 0.33 4.36 16 10 N -0.72 -24.40 4.91 -466.37 -2.29 -26.69 16 11 C 0.56 26.26 7.73 86.67 0.67 26.93 16 12 O -0.58 -32.78 13.56 -4.06 -0.06 -32.83 16 13 C -0.28 -13.70 5.92 -19.70 -0.12 -13.81 16 14 C -0.04 -1.59 9.53 22.50 0.21 -1.38 16 15 C -0.24 -9.13 10.03 22.41 0.22 -8.90 16 16 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 17 C -0.23 -11.55 7.87 22.72 0.18 -11.37 16 18 C 0.10 5.32 5.17 -21.11 -0.11 5.21 16 19 C -0.51 -30.20 7.65 23.41 0.18 -30.02 16 20 H 0.08 4.95 5.92 -2.91 -0.02 4.93 16 21 C 0.00 -0.14 5.04 85.37 0.43 0.29 16 22 N -0.82 -46.53 12.57 21.88 0.28 -46.25 16 23 Si 1.11 48.27 29.98 68.60 2.06 50.33 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H 0.03 0.86 6.43 -2.39 -0.02 0.84 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.06 1.15 6.43 -2.39 -0.02 1.14 16 30 H 0.06 1.12 6.86 -2.38 -0.02 1.10 16 31 H 0.09 1.09 6.43 -2.39 -0.02 1.07 16 32 H 0.09 1.11 6.43 -2.39 -0.02 1.10 16 33 H 0.06 1.13 6.86 -2.39 -0.02 1.12 16 34 H 0.03 0.86 6.43 -2.39 -0.02 0.84 16 35 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 36 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 1.36 6.43 -2.38 -0.02 1.35 16 38 H 0.06 1.37 6.43 -2.39 -0.02 1.35 16 39 H 0.06 0.69 6.43 -2.38 -0.02 0.68 16 40 H 0.06 0.69 6.43 -2.39 -0.02 0.67 16 41 H 0.40 2.42 9.12 -74.06 -0.68 1.75 16 42 H 0.05 1.55 6.43 -2.38 -0.02 1.53 16 43 H 0.05 1.60 6.43 -2.38 -0.02 1.59 16 44 H 0.40 11.20 4.21 -92.71 -0.39 10.81 16 45 H 0.13 3.93 6.41 -2.91 -0.02 3.91 16 46 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 47 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 48 H 0.09 4.74 6.94 -2.91 -0.02 4.72 16 49 H 0.28 16.51 6.55 -92.71 -0.61 15.90 16 Total: -1.00 -73.53 368.96 2.44 -71.10 By element: Atomic # 1 Polarization: 37.33 SS G_CDS: 0.09 Total: 37.42 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 4.40 Total: -41.55 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -2.01 Total: -72.95 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -2.09 Total: -44.34 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.06 Total: 50.33 kcal Total: -73.53 2.44 -71.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326000.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.943 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds