Wall clock time and date at job start Tue Mar 31 2020 13:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.53008 * 109.47411 * 119.99933 * 2 1 3 5 5 H 1.08994 * 109.47233 * 203.38067 * 4 2 1 6 6 O 1.42904 * 109.46545 * 323.37915 * 4 2 1 7 7 C 1.53003 * 109.47025 * 83.37563 * 4 2 1 8 8 C 1.52999 * 109.46719 * 64.85175 * 7 4 2 9 9 C 1.52995 * 109.47231 * 304.85315 * 7 4 2 10 10 C 1.52995 * 109.46901 * 184.84632 * 7 4 2 11 11 N 1.46497 * 109.47120 * 180.02562 * 10 7 4 12 12 C 1.34783 * 120.00021 * 180.02562 * 11 10 7 13 13 O 1.21604 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.47437 * 119.99725 * 180.02562 * 12 11 10 15 15 C 1.39228 * 120.28447 * 355.45670 * 14 12 11 16 16 C 1.38221 * 120.09114 * 180.28511 * 15 14 12 17 17 C 1.38827 * 120.67417 * 359.71372 * 16 15 14 18 18 C 1.37598 * 120.57049 * 0.02562 * 17 16 15 19 19 C 1.40700 * 119.88498 * 359.97438 * 18 17 16 20 20 C 1.40884 * 120.32954 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00367 * 217.80710 * 20 19 18 22 22 C 1.40267 * 120.00138 * 37.81238 * 20 19 18 23 23 N 1.30633 * 120.00472 * 189.75366 * 22 20 19 24 24 Si 1.86800 * 119.99995 * 9.75141 * 22 20 19 25 25 H 1.48503 * 109.47058 * 266.44079 * 24 22 20 26 26 H 1.48502 * 109.46868 * 26.43731 * 24 22 20 27 27 H 1.48498 * 109.47575 * 146.43972 * 24 22 20 28 28 H 1.09000 * 109.47731 * 305.60266 * 1 2 3 29 29 H 1.09000 * 109.47331 * 65.60431 * 1 2 3 30 30 H 1.09006 * 109.47136 * 185.60758 * 1 2 3 31 31 H 1.09004 * 109.47469 * 240.00105 * 2 1 3 32 32 H 1.09004 * 109.47082 * 64.94369 * 3 2 1 33 33 H 1.09000 * 109.47397 * 184.94324 * 3 2 1 34 34 H 1.08998 * 109.47329 * 304.94353 * 3 2 1 35 35 H 0.96700 * 113.99960 * 60.00332 * 6 4 2 36 36 H 1.08994 * 109.47251 * 184.29148 * 8 7 4 37 37 H 1.09002 * 109.47144 * 304.29060 * 8 7 4 38 38 H 1.09005 * 109.47232 * 64.29140 * 8 7 4 39 39 H 1.08999 * 109.47135 * 308.87942 * 9 7 4 40 40 H 1.08992 * 109.47375 * 68.88330 * 9 7 4 41 41 H 1.09004 * 109.46816 * 188.88620 * 9 7 4 42 42 H 1.09009 * 109.46944 * 60.00414 * 10 7 4 43 43 H 1.09003 * 109.47642 * 300.00327 * 10 7 4 44 44 H 0.96999 * 120.00271 * 0.02562 * 11 10 7 45 45 H 1.08005 * 119.95149 * 0.02562 * 15 14 12 46 46 H 1.07996 * 119.65951 * 179.74150 * 16 15 14 47 47 H 1.08000 * 119.71433 * 180.02562 * 17 16 15 48 48 H 1.07995 * 120.05605 * 180.02562 * 18 17 16 49 49 H 0.96995 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.0504 -0.3821 1.4775 6 8 1.1792 -0.4299 2.3522 7 6 2.0531 -2.2303 0.9973 8 6 3.0655 -2.5548 -0.1031 9 6 0.6600 -2.6864 0.5592 10 6 2.4473 -2.9587 2.2837 11 7 2.4604 -4.4036 2.0423 12 6 2.7812 -5.2507 3.0404 13 8 3.0602 -4.8156 4.1411 14 6 2.7950 -6.7048 2.7972 15 6 2.3870 -7.2150 1.5677 16 6 2.3959 -8.5793 1.3461 17 6 2.8150 -9.4553 2.3382 18 6 3.2290 -8.9806 3.5616 19 6 3.2296 -7.5963 3.8129 20 6 3.6520 -7.1000 5.0619 21 1 3.1470 -6.2551 5.5063 22 6 4.7287 -7.7033 5.7285 23 7 5.0007 -7.3731 6.9628 24 14 5.7738 -8.9791 4.8512 25 1 5.2500 -10.3368 5.1477 26 1 5.7234 -8.7381 3.3868 27 1 7.1785 -8.8769 5.3217 28 1 -0.3634 0.5982 0.8355 29 1 -0.3634 0.4245 -0.9359 30 1 -0.3634 -1.0228 0.1004 31 1 1.8933 -0.5138 -0.8900 32 1 1.7507 1.9301 0.9310 33 1 3.1263 1.4438 -0.0886 34 1 1.6061 1.9813 -0.8424 35 1 0.2619 -0.7050 2.2185 36 1 3.0205 -3.6186 -0.3360 37 1 2.8287 -1.9769 -0.9965 38 1 4.0685 -2.2998 0.2393 39 1 -0.0824 -2.3172 1.2667 40 1 0.4438 -2.2915 -0.4334 41 1 0.6261 -3.7756 0.5322 42 1 1.7260 -2.7275 3.0677 43 1 3.4398 -2.6338 2.5958 44 1 2.2383 -4.7507 1.1642 45 1 2.0591 -6.5440 0.7875 46 1 2.0740 -8.9677 0.3912 47 1 2.8162 -10.5184 2.1482 48 1 3.5538 -9.6695 4.3273 49 1 5.7450 -7.7905 7.4238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601368566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:43 Heat of formation + Delta-G solvation = -74.474451 kcal Electronic energy + Delta-G solvation = -27795.738428 eV Core-core repulsion = 24108.277775 eV Total energy + Delta-G solvation = -3687.460653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.27025 -38.83158 -37.01492 -35.36165 -34.07129 -33.65247 -32.31824 -30.44398 -30.00171 -28.73698 -26.77271 -26.28116 -25.91017 -24.95627 -22.32594 -21.14526 -20.36594 -19.57032 -19.19597 -17.58998 -17.13551 -16.45314 -16.03626 -15.50369 -15.25790 -15.09458 -14.55561 -14.32198 -14.08481 -13.83738 -13.51248 -13.40401 -13.31776 -12.93368 -12.62541 -12.57607 -12.35847 -12.33971 -12.28405 -12.07114 -11.85313 -11.77568 -11.57906 -11.41581 -11.08431 -11.00033 -10.92048 -10.72664 -10.68347 -10.44407 -10.39466 -10.14404 -9.81241 -9.69991 -9.24863 -8.44275 -8.31903 -7.81081 -7.56581 -6.86756 -4.45920 2.11888 2.60440 3.09660 3.18482 3.29809 3.85758 3.97223 4.05037 4.28711 4.47137 4.53117 4.62571 4.71509 4.79400 4.80904 4.91610 5.22714 5.32302 5.37788 5.39652 5.43872 5.53657 5.57828 5.61288 5.69856 5.72829 5.75507 5.82739 5.83881 5.94673 5.97543 6.01262 6.04823 6.09529 6.12612 6.24866 6.29673 6.44837 6.52059 6.80505 7.10522 7.16506 7.25014 7.39553 7.53779 7.58957 7.77268 8.02224 8.36391 8.51306 8.65735 8.88929 9.41491 10.10272 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.003255 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.088635 B = 8599.510770 C = 9371.950155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.128 4.128 3 C -0.145 4.145 4 C 0.123 3.877 5 H 0.100 0.900 6 O -0.555 6.555 7 C -0.107 4.107 8 C -0.144 4.144 9 C -0.153 4.153 10 C 0.141 3.859 11 N -0.746 5.746 12 C 0.559 3.441 13 O -0.526 6.526 14 C -0.246 4.246 15 C -0.043 4.043 16 C -0.254 4.254 17 C -0.067 4.067 18 C -0.223 4.223 19 C 0.117 3.883 20 C -0.402 4.402 21 H 0.123 0.877 22 C 0.079 3.921 23 N -0.795 5.795 24 Si 0.905 3.095 25 H -0.269 1.269 26 H -0.242 1.242 27 H -0.288 1.288 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.371 0.629 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.389 0.611 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 10.515 -15.380 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.146 4.146 3 C -0.203 4.203 4 C 0.063 3.937 5 H 0.118 0.882 6 O -0.362 6.362 7 C -0.108 4.108 8 C -0.201 4.201 9 C -0.209 4.209 10 C 0.016 3.984 11 N -0.403 5.403 12 C 0.351 3.649 13 O -0.403 6.403 14 C -0.251 4.251 15 C -0.062 4.062 16 C -0.273 4.273 17 C -0.086 4.086 18 C -0.242 4.242 19 C 0.112 3.888 20 C -0.429 4.429 21 H 0.140 0.860 22 C -0.141 4.141 23 N -0.418 5.418 24 Si 0.731 3.269 25 H -0.194 1.194 26 H -0.165 1.165 27 H -0.216 1.216 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.224 0.776 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.122 0.878 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.210 11.115 -14.025 18.638 hybrid contribution -0.018 -1.024 -1.043 1.462 sum -5.228 10.091 -15.067 18.873 Atomic orbital electron populations 1.22410 0.95243 1.03738 1.02204 1.21846 0.96585 0.96993 0.99193 1.21827 1.00738 0.95766 1.01949 1.21949 0.94569 0.91321 0.85822 0.88207 1.86608 1.23354 1.84532 1.41665 1.21485 0.96573 0.96333 0.96368 1.21916 0.98737 1.02008 0.97459 1.22227 0.95563 1.02043 1.01099 1.21049 1.01565 0.80461 0.95281 1.46047 1.74221 1.05745 1.14246 1.18342 0.76405 0.86515 0.83599 1.90741 1.47711 1.78622 1.23262 1.19465 1.18989 0.91247 0.95404 1.20752 0.95932 0.94842 0.94663 1.20280 1.14450 0.93178 0.99402 1.20738 0.96720 0.97677 0.93446 1.21155 1.10102 0.95318 0.97623 1.17562 0.89307 0.90236 0.91695 1.20145 1.11120 1.13063 0.98559 0.85973 1.26355 0.98133 0.95664 0.93966 1.69568 1.25499 1.36572 1.10187 0.86408 0.77811 0.80219 0.82493 1.19440 1.16531 1.21559 0.92117 0.92657 0.90233 0.90089 0.92190 0.92775 0.92934 0.78037 0.92055 0.92173 0.92092 0.92253 0.91386 0.91957 0.91431 0.92210 0.77583 0.88910 0.88590 0.88594 0.87823 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 7.55 37.15 0.28 -0.94 16 2 C -0.13 -0.98 2.30 -90.62 -0.21 -1.19 16 3 C -0.15 -1.12 9.07 37.16 0.34 -0.78 16 4 C 0.12 1.20 2.30 -26.73 -0.06 1.14 16 5 H 0.10 1.06 7.93 -51.93 -0.41 0.64 16 6 O -0.56 -6.23 11.97 -35.23 -0.42 -6.65 16 7 C -0.11 -1.10 0.39 -154.51 -0.06 -1.16 16 8 C -0.14 -1.37 8.10 37.16 0.30 -1.07 16 9 C -0.15 -1.35 6.56 37.16 0.24 -1.11 16 10 C 0.14 2.12 4.37 -4.05 -0.02 2.11 16 11 N -0.75 -12.70 4.85 -61.38 -0.30 -13.00 16 12 C 0.56 12.77 7.72 -12.51 -0.10 12.68 16 13 O -0.53 -14.25 13.56 5.27 0.07 -14.18 16 14 C -0.25 -5.78 5.92 -104.36 -0.62 -6.40 16 15 C -0.04 -0.85 9.52 -39.22 -0.37 -1.22 16 16 C -0.25 -4.95 10.03 -39.37 -0.39 -5.35 16 17 C -0.07 -1.40 10.01 -39.60 -0.40 -1.79 16 18 C -0.22 -5.29 6.98 -38.89 -0.27 -5.56 16 19 C 0.12 3.03 4.99 -106.55 -0.53 2.49 16 20 C -0.40 -11.42 8.26 -37.82 -0.31 -11.73 16 21 H 0.12 3.85 6.04 -52.48 -0.32 3.54 16 22 C 0.08 2.14 5.48 -17.30 -0.09 2.04 16 23 N -0.79 -21.93 13.92 55.56 0.77 -21.16 16 24 Si 0.90 20.93 24.55 -169.99 -4.17 16.75 16 25 H -0.27 -5.90 6.83 56.52 0.39 -5.51 16 26 H -0.24 -5.72 6.68 56.52 0.38 -5.35 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.06 0.43 7.22 -51.93 -0.38 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.51 3.71 -51.93 -0.19 0.31 16 31 H 0.08 0.59 5.78 -51.93 -0.30 0.29 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.37 3.27 5.60 45.56 0.26 3.53 16 36 H 0.06 0.61 6.99 -51.93 -0.36 0.24 16 37 H 0.06 0.46 6.08 -51.93 -0.32 0.14 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.50 5.73 -51.93 -0.30 0.20 16 40 H 0.07 0.49 6.01 -51.93 -0.31 0.18 16 41 H 0.06 0.61 6.66 -51.93 -0.35 0.27 16 42 H 0.07 1.13 7.56 -51.92 -0.39 0.74 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.39 5.60 4.25 -40.82 -0.17 5.42 16 45 H 0.09 1.48 6.42 -52.48 -0.34 1.14 16 46 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 47 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 48 H 0.10 2.43 5.18 -52.49 -0.27 2.15 16 49 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -31.20 363.45 -7.55 -38.76 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.71 Total: 11.84 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.28 Total: -17.85 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.48 Total: -34.16 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.35 Total: -20.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.20 -7.55 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601368566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.718 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds