Wall clock time and date at job start Tue Mar 31 2020 13:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47084 * 2 1 4 4 C 1.53008 * 109.47411 * 119.99933 * 2 1 3 5 5 H 1.08994 * 109.47233 * 203.38067 * 4 2 1 6 6 O 1.42904 * 109.46545 * 323.37915 * 4 2 1 7 7 C 1.53003 * 109.47025 * 83.37563 * 4 2 1 8 8 C 1.52999 * 109.46719 * 64.85175 * 7 4 2 9 9 C 1.52995 * 109.47231 * 304.85315 * 7 4 2 10 10 C 1.52995 * 109.46901 * 184.84632 * 7 4 2 11 11 N 1.46497 * 109.47120 * 180.02562 * 10 7 4 12 12 C 1.34783 * 120.00021 * 180.02562 * 11 10 7 13 13 O 1.21604 * 119.99899 * 359.97438 * 12 11 10 14 14 C 1.47437 * 119.99725 * 180.02562 * 12 11 10 15 15 C 1.39228 * 120.28447 * 355.45670 * 14 12 11 16 16 C 1.38221 * 120.09114 * 180.28511 * 15 14 12 17 17 C 1.38827 * 120.67417 * 359.71372 * 16 15 14 18 18 C 1.37598 * 120.57049 * 0.02562 * 17 16 15 19 19 C 1.40700 * 119.88498 * 359.97438 * 18 17 16 20 20 C 1.40884 * 120.32954 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00367 * 217.80710 * 20 19 18 22 22 C 1.40267 * 120.00138 * 37.81238 * 20 19 18 23 23 N 1.30633 * 120.00472 * 189.75366 * 22 20 19 24 24 Si 1.86800 * 119.99995 * 9.75141 * 22 20 19 25 25 H 1.48503 * 109.47058 * 266.44079 * 24 22 20 26 26 H 1.48502 * 109.46868 * 26.43731 * 24 22 20 27 27 H 1.48498 * 109.47575 * 146.43972 * 24 22 20 28 28 H 1.09000 * 109.47731 * 305.60266 * 1 2 3 29 29 H 1.09000 * 109.47331 * 65.60431 * 1 2 3 30 30 H 1.09006 * 109.47136 * 185.60758 * 1 2 3 31 31 H 1.09004 * 109.47469 * 240.00105 * 2 1 3 32 32 H 1.09004 * 109.47082 * 64.94369 * 3 2 1 33 33 H 1.09000 * 109.47397 * 184.94324 * 3 2 1 34 34 H 1.08998 * 109.47329 * 304.94353 * 3 2 1 35 35 H 0.96700 * 113.99960 * 60.00332 * 6 4 2 36 36 H 1.08994 * 109.47251 * 184.29148 * 8 7 4 37 37 H 1.09002 * 109.47144 * 304.29060 * 8 7 4 38 38 H 1.09005 * 109.47232 * 64.29140 * 8 7 4 39 39 H 1.08999 * 109.47135 * 308.87942 * 9 7 4 40 40 H 1.08992 * 109.47375 * 68.88330 * 9 7 4 41 41 H 1.09004 * 109.46816 * 188.88620 * 9 7 4 42 42 H 1.09009 * 109.46944 * 60.00414 * 10 7 4 43 43 H 1.09003 * 109.47642 * 300.00327 * 10 7 4 44 44 H 0.96999 * 120.00271 * 0.02562 * 11 10 7 45 45 H 1.08005 * 119.95149 * 0.02562 * 15 14 12 46 46 H 1.07996 * 119.65951 * 179.74150 * 16 15 14 47 47 H 1.08000 * 119.71433 * 180.02562 * 17 16 15 48 48 H 1.07995 * 120.05605 * 180.02562 * 18 17 16 49 49 H 0.96995 * 120.00306 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.0504 -0.3821 1.4775 6 8 1.1792 -0.4299 2.3522 7 6 2.0531 -2.2303 0.9973 8 6 3.0655 -2.5548 -0.1031 9 6 0.6600 -2.6864 0.5592 10 6 2.4473 -2.9587 2.2837 11 7 2.4604 -4.4036 2.0423 12 6 2.7812 -5.2507 3.0404 13 8 3.0602 -4.8156 4.1411 14 6 2.7950 -6.7048 2.7972 15 6 2.3870 -7.2150 1.5677 16 6 2.3959 -8.5793 1.3461 17 6 2.8150 -9.4553 2.3382 18 6 3.2290 -8.9806 3.5616 19 6 3.2296 -7.5963 3.8129 20 6 3.6520 -7.1000 5.0619 21 1 3.1470 -6.2551 5.5063 22 6 4.7287 -7.7033 5.7285 23 7 5.0007 -7.3731 6.9628 24 14 5.7738 -8.9791 4.8512 25 1 5.2500 -10.3368 5.1477 26 1 5.7234 -8.7381 3.3868 27 1 7.1785 -8.8769 5.3217 28 1 -0.3634 0.5982 0.8355 29 1 -0.3634 0.4245 -0.9359 30 1 -0.3634 -1.0228 0.1004 31 1 1.8933 -0.5138 -0.8900 32 1 1.7507 1.9301 0.9310 33 1 3.1263 1.4438 -0.0886 34 1 1.6061 1.9813 -0.8424 35 1 0.2619 -0.7050 2.2185 36 1 3.0205 -3.6186 -0.3360 37 1 2.8287 -1.9769 -0.9965 38 1 4.0685 -2.2998 0.2393 39 1 -0.0824 -2.3172 1.2667 40 1 0.4438 -2.2915 -0.4334 41 1 0.6261 -3.7756 0.5322 42 1 1.7260 -2.7275 3.0677 43 1 3.4398 -2.6338 2.5958 44 1 2.2383 -4.7507 1.1642 45 1 2.0591 -6.5440 0.7875 46 1 2.0740 -8.9677 0.3912 47 1 2.8162 -10.5184 2.1482 48 1 3.5538 -9.6695 4.3273 49 1 5.7450 -7.7905 7.4238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601368566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:42 Heat of formation + Delta-G solvation = -96.434626 kcal Electronic energy + Delta-G solvation = -27796.690693 eV Core-core repulsion = 24108.277775 eV Total energy + Delta-G solvation = -3688.412918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.32963 -40.39994 -38.71782 -36.63656 -35.53386 -34.85836 -33.68305 -32.28467 -31.63731 -29.40891 -27.88057 -27.24546 -26.96395 -26.44385 -24.00294 -22.83034 -21.28829 -21.19517 -20.13848 -19.42941 -18.54610 -17.52685 -17.19780 -16.91128 -16.56978 -16.25854 -15.88401 -15.83699 -15.80004 -15.28848 -14.84429 -14.66452 -14.45488 -14.16689 -14.02363 -13.85720 -13.73010 -13.28758 -13.25757 -13.07597 -12.92320 -12.79037 -12.71098 -12.55101 -12.51422 -12.36265 -12.18986 -12.02712 -11.88840 -11.66533 -11.61727 -11.45431 -11.18908 -11.09920 -10.57351 -10.28193 -9.95951 -9.51066 -9.39654 -8.81048 -6.48450 0.34486 0.83757 1.22722 1.36309 1.45524 2.09888 2.27003 2.43643 2.72120 3.42886 3.52871 3.66096 3.69426 3.88545 4.06192 4.13445 4.18644 4.22291 4.27815 4.44275 4.44930 4.59719 4.66051 4.71358 4.78494 4.79993 4.83539 4.86938 4.88741 4.98666 4.98728 5.02060 5.05537 5.09400 5.14578 5.24512 5.30354 5.35133 5.41307 5.46762 5.49889 5.54998 5.64322 5.69030 5.87070 5.96904 6.27527 6.48230 6.68123 6.79110 6.80467 6.93114 7.66426 8.23862 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.003255 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.088635 B = 8599.510770 C = 9371.950155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.119 4.119 3 C -0.146 4.146 4 C 0.122 3.878 5 H 0.085 0.915 6 O -0.576 6.576 7 C -0.093 4.093 8 C -0.145 4.145 9 C -0.153 4.153 10 C 0.141 3.859 11 N -0.719 5.719 12 C 0.550 3.450 13 O -0.581 6.581 14 C -0.263 4.263 15 C -0.040 4.040 16 C -0.226 4.226 17 C -0.063 4.063 18 C -0.243 4.243 19 C 0.099 3.901 20 C -0.452 4.452 21 H 0.067 0.933 22 C 0.034 3.966 23 N -0.854 5.854 24 Si 0.967 3.033 25 H -0.247 1.247 26 H -0.248 1.248 27 H -0.281 1.281 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.380 0.620 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.406 0.594 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.138 0.862 48 H 0.101 0.899 49 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 9.067 -21.109 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.138 4.138 3 C -0.203 4.203 4 C 0.062 3.938 5 H 0.103 0.897 6 O -0.384 6.384 7 C -0.093 4.093 8 C -0.202 4.202 9 C -0.209 4.209 10 C 0.017 3.983 11 N -0.374 5.374 12 C 0.342 3.658 13 O -0.462 6.462 14 C -0.268 4.268 15 C -0.059 4.059 16 C -0.245 4.245 17 C -0.081 4.081 18 C -0.263 4.263 19 C 0.095 3.905 20 C -0.481 4.481 21 H 0.085 0.915 22 C -0.179 4.179 23 N -0.481 5.481 24 Si 0.789 3.211 25 H -0.171 1.171 26 H -0.171 1.171 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.245 0.755 45 H 0.157 0.843 46 H 0.165 0.835 47 H 0.155 0.845 48 H 0.119 0.881 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.608 9.672 -19.817 23.020 hybrid contribution 0.194 -0.496 0.454 0.700 sum -6.414 9.176 -19.363 22.366 Atomic orbital electron populations 1.22405 0.94292 1.04192 1.02589 1.21791 0.97296 0.96649 0.98041 1.21831 1.00896 0.95857 1.01759 1.21987 0.93998 0.91088 0.86690 0.89665 1.86589 1.24275 1.84754 1.42783 1.21393 0.98119 0.95956 0.93875 1.21950 0.97722 1.02570 0.97923 1.22279 0.94137 1.01799 1.02733 1.21125 0.99689 0.79607 0.97893 1.45751 1.71973 1.06037 1.13649 1.18612 0.76052 0.87376 0.83765 1.90745 1.50179 1.79481 1.25807 1.19846 1.18783 0.91392 0.96737 1.21210 0.94461 0.96344 0.93849 1.20967 1.10314 0.92562 1.00672 1.21269 0.94452 1.00300 0.92094 1.21253 1.11488 0.94080 0.99432 1.17824 0.89341 0.92019 0.91279 1.19885 1.13785 1.13229 1.01200 0.91485 1.27121 0.98718 0.97604 0.94507 1.69634 1.27266 1.39392 1.11793 0.85475 0.76432 0.78590 0.80576 1.17136 1.17096 1.20761 0.92760 0.91495 0.89525 0.88622 0.93609 0.92769 0.91613 0.76940 0.91899 0.89305 0.93263 0.91955 0.88542 0.92420 0.93583 0.94792 0.75488 0.84266 0.83543 0.84465 0.88122 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 7.55 71.98 0.54 -1.36 16 2 C -0.12 -1.53 2.30 -10.79 -0.02 -1.56 16 3 C -0.15 -1.99 9.07 71.98 0.65 -1.34 16 4 C 0.12 2.29 2.30 30.60 0.07 2.36 16 5 H 0.09 1.84 7.93 -2.39 -0.02 1.82 16 6 O -0.58 -13.03 11.97 -148.98 -1.78 -14.81 16 7 C -0.09 -1.77 0.39 -52.18 -0.02 -1.79 16 8 C -0.14 -2.35 8.10 71.98 0.58 -1.76 16 9 C -0.15 -2.23 6.56 71.98 0.47 -1.75 16 10 C 0.14 4.39 4.37 86.38 0.38 4.76 16 11 N -0.72 -24.22 4.85 -466.35 -2.26 -26.48 16 12 C 0.55 26.04 7.72 86.67 0.67 26.71 16 13 O -0.58 -34.28 13.56 -4.04 -0.05 -34.34 16 14 C -0.26 -12.25 5.92 -19.70 -0.12 -12.37 16 15 C -0.04 -1.41 9.52 22.50 0.21 -1.19 16 16 C -0.23 -7.36 10.03 22.41 0.22 -7.13 16 17 C -0.06 -2.30 10.01 22.26 0.22 -2.08 16 18 C -0.24 -11.22 6.98 22.72 0.16 -11.06 16 19 C 0.10 5.28 4.99 -21.11 -0.11 5.17 16 20 C -0.45 -27.83 8.26 23.41 0.19 -27.64 16 21 H 0.07 4.75 6.04 -2.91 -0.02 4.73 16 22 C 0.03 1.95 5.48 85.36 0.47 2.42 16 23 N -0.85 -51.23 13.92 21.88 0.30 -50.93 16 24 Si 0.97 44.51 24.55 68.60 1.68 46.19 16 25 H -0.25 -10.32 6.83 99.48 0.68 -9.64 16 26 H -0.25 -11.36 6.68 99.48 0.66 -10.70 16 27 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 28 H 0.05 0.67 7.22 -2.39 -0.02 0.65 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.79 3.71 -2.38 -0.01 0.79 16 31 H 0.10 0.98 5.78 -2.39 -0.01 0.96 16 32 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.38 6.54 5.60 -74.06 -0.41 6.13 16 36 H 0.06 1.01 6.99 -2.39 -0.02 0.99 16 37 H 0.09 0.97 6.08 -2.39 -0.01 0.95 16 38 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 0.89 5.73 -2.39 -0.01 0.88 16 40 H 0.10 0.92 6.01 -2.39 -0.01 0.90 16 41 H 0.06 0.91 6.66 -2.39 -0.02 0.90 16 42 H 0.05 1.64 7.56 -2.38 -0.02 1.62 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.41 10.55 4.25 -92.71 -0.39 10.16 16 45 H 0.14 3.55 6.42 -2.91 -0.02 3.54 16 46 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 48 H 0.10 4.63 5.18 -2.91 -0.02 4.62 16 49 H 0.29 15.65 8.29 -92.71 -0.77 14.88 16 Total: -1.00 -77.78 363.45 2.58 -75.21 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.11 Total: 34.78 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.58 Total: -29.62 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.96 Total: -77.41 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -1.84 Total: -49.15 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.68 Total: 46.19 kcal Total: -77.78 2.58 -75.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601368566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.229 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds