Wall clock time and date at job start Tue Mar 31 2020 13:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.53006 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46844 * 54.99562 * 4 3 2 6 6 C 1.52997 * 109.47245 * 174.99688 * 4 3 2 7 7 C 1.53002 * 109.47236 * 184.99972 * 6 4 3 8 8 O 1.42892 * 109.47597 * 180.02562 * 7 6 4 9 9 N 1.46503 * 109.47143 * 295.00038 * 4 3 2 10 10 C 1.34769 * 120.00260 * 154.99628 * 9 4 3 11 11 O 1.21285 * 119.99717 * 359.97438 * 10 9 4 12 12 C 1.50695 * 120.00104 * 179.97438 * 10 9 4 13 13 C 1.53007 * 109.47271 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46886 * 305.00350 * 13 12 10 15 15 C 1.50702 * 109.46995 * 64.99843 * 13 12 10 16 16 H 1.08001 * 119.99935 * 29.64127 * 15 13 12 17 17 C 1.37874 * 120.00007 * 209.63766 * 15 13 12 18 18 N 1.31513 * 120.00007 * 4.98578 * 17 15 13 19 19 Si 1.86804 * 119.99867 * 184.99171 * 17 15 13 20 20 H 1.48495 * 109.47217 * 59.99460 * 19 17 15 21 21 H 1.48500 * 109.47220 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46714 * 299.99551 * 19 17 15 23 23 C 1.50699 * 109.47425 * 184.99925 * 13 12 10 24 24 C 1.38234 * 119.99727 * 296.81589 * 23 13 12 25 25 C 1.38242 * 119.99473 * 179.78923 * 24 23 13 26 26 C 1.38236 * 120.00094 * 0.43007 * 25 24 23 27 27 C 1.38238 * 119.99769 * 359.82383 * 26 25 24 28 28 C 1.38230 * 120.00347 * 359.96632 * 27 26 25 29 29 H 1.09003 * 109.47170 * 60.00442 * 1 2 3 30 30 H 1.09001 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47123 * 300.00022 * 1 2 3 32 32 H 1.08994 * 109.47130 * 239.99572 * 2 1 3 33 33 H 1.09003 * 109.47170 * 119.99557 * 2 1 3 34 34 H 1.08994 * 109.47577 * 59.99845 * 3 2 1 35 35 H 1.09002 * 109.47363 * 299.99656 * 3 2 1 36 36 H 1.08999 * 109.47200 * 305.00002 * 6 4 3 37 37 H 1.08998 * 109.47114 * 65.00000 * 6 4 3 38 38 H 1.08998 * 109.46738 * 300.00567 * 7 6 4 39 39 H 1.09002 * 109.46640 * 59.99711 * 7 6 4 40 40 H 0.96695 * 114.00452 * 179.97438 * 8 7 6 41 41 H 0.97002 * 119.99711 * 335.00139 * 9 4 3 42 42 H 1.08999 * 109.47575 * 300.00168 * 12 10 9 43 43 H 1.08998 * 109.47025 * 60.00693 * 12 10 9 44 44 H 0.97000 * 119.99832 * 179.97438 * 18 17 15 45 45 H 1.07995 * 120.00302 * 359.97438 * 24 23 13 46 46 H 1.08000 * 120.00036 * 180.27606 * 25 24 23 47 47 H 1.08000 * 119.99982 * 179.83770 * 26 25 24 48 48 H 1.08004 * 119.99387 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.00165 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1252 7 6 5.6049 2.8705 -0.2499 8 8 6.0813 4.2125 -0.3668 9 7 4.0578 0.8590 1.2528 10 6 5.2797 0.2925 1.3012 11 8 5.9753 0.2654 0.3079 12 6 5.7817 -0.3072 2.5893 13 6 7.1847 -0.8784 2.3733 14 1 7.1655 -1.5848 1.5434 15 6 8.1403 0.2430 2.0565 16 1 7.9644 1.2312 2.4552 17 6 9.2391 0.0074 1.2578 18 7 9.4011 -1.1690 0.6926 19 14 10.4979 1.3591 0.9786 20 1 11.0821 1.7682 2.2811 21 1 11.5749 0.8564 0.0884 22 1 9.8368 2.5276 0.3437 23 6 7.6373 -1.5856 3.6247 24 6 7.8033 -0.8749 4.7986 25 6 8.2143 -1.5245 5.9476 26 6 8.4678 -2.8832 5.9204 27 6 8.3068 -3.5929 4.7450 28 6 7.8916 -2.9441 3.5972 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6457 3.3430 -1.0110 37 1 3.7912 3.4463 0.7600 38 1 6.0391 2.4069 0.6359 39 1 5.8936 2.3036 -1.1350 40 1 7.0422 4.2830 -0.4494 41 1 3.5013 0.8804 2.0470 42 1 5.8182 0.4636 3.3591 43 1 5.1091 -1.1046 2.9052 44 1 10.1741 -1.3346 0.1304 45 1 7.6091 0.1872 4.8189 46 1 8.3398 -0.9701 6.8659 47 1 8.7914 -3.3902 6.8174 48 1 8.5044 -4.6545 4.7239 49 1 7.7654 -3.4987 2.6791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601714829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:53 Heat of formation + Delta-G solvation = -89.699754 kcal Electronic energy + Delta-G solvation = -27754.601139 eV Core-core repulsion = 24066.480267 eV Total energy + Delta-G solvation = -3688.120872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.55034 -38.33934 -36.75448 -35.98172 -34.00093 -33.24241 -31.62486 -30.99750 -30.01378 -28.71356 -27.88184 -25.52681 -23.64567 -22.76779 -21.65123 -21.05720 -20.83244 -20.08590 -19.22501 -17.00119 -16.68909 -16.25936 -16.15094 -15.71510 -14.96481 -14.55488 -14.49304 -14.15960 -14.05955 -13.92620 -13.75573 -13.30012 -13.18129 -12.92837 -12.57279 -12.44046 -12.30830 -12.01415 -11.92653 -11.71634 -11.59012 -11.37928 -11.19700 -10.93667 -10.88171 -10.77346 -10.68626 -10.60880 -10.36573 -10.27016 -10.03860 -9.45247 -9.42314 -9.11561 -8.81012 -8.51224 -8.33392 -8.05298 -7.62591 -5.93794 -3.93052 2.28061 2.33751 3.34807 3.40094 3.41438 3.55362 3.73538 4.35140 4.49041 4.74207 4.90009 4.92654 4.97234 5.29106 5.33895 5.40184 5.47012 5.55413 5.65267 5.66094 5.70366 5.72361 5.75913 5.83697 5.88431 5.93978 6.00854 6.09604 6.12194 6.16074 6.20495 6.24627 6.28860 6.40475 6.43456 6.49564 6.53831 6.80381 6.90767 7.00808 7.04034 7.30401 7.44611 7.53136 7.86590 7.94034 8.00007 8.04760 8.14083 8.38302 9.05835 9.11441 9.67486 11.16164 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.004689 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.637982 B = 5970.357484 C = 7868.408640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.123 4.123 4 C 0.149 3.851 5 H 0.087 0.913 6 C -0.126 4.126 7 C 0.076 3.924 8 O -0.589 6.589 9 N -0.744 5.744 10 C 0.511 3.489 11 O -0.492 6.492 12 C -0.123 4.123 13 C 0.080 3.920 14 H 0.073 0.927 15 C -0.489 4.489 16 H 0.048 0.952 17 C 0.078 3.922 18 N -0.880 5.880 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.279 1.279 23 C -0.023 4.023 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.155 4.155 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.379 0.621 41 H 0.391 0.609 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 1.858 2.826 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.161 4.161 4 C 0.043 3.957 5 H 0.105 0.895 6 C -0.165 4.165 7 C -0.001 4.001 8 O -0.395 6.395 9 N -0.400 5.400 10 C 0.298 3.702 11 O -0.363 6.363 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.091 0.909 15 C -0.527 4.527 16 H 0.067 0.933 17 C -0.125 4.125 18 N -0.517 5.517 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.205 1.205 23 C -0.023 4.023 24 C -0.132 4.132 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.225 0.775 41 H 0.225 0.775 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.550 1.837 1.978 13.816 hybrid contribution 1.307 0.640 0.228 1.473 sum -12.243 2.477 2.206 12.684 Atomic orbital electron populations 1.21777 0.96066 1.01496 1.01547 1.21519 0.95373 0.96580 1.02744 1.21860 0.94080 0.97418 1.02721 1.20790 0.92847 0.93103 0.88919 0.89524 1.21951 0.95477 0.96831 1.02247 1.22395 0.93794 0.82002 1.01955 1.86286 1.27246 1.28833 1.97168 1.46313 1.18905 1.62294 1.12465 1.20856 0.80003 0.77648 0.91679 1.90766 1.54407 1.54974 1.36177 1.21779 1.00373 0.99875 0.94310 1.17820 0.88433 0.96535 0.91109 0.90918 1.20603 1.07993 0.94056 1.30024 0.93339 1.24796 0.97848 0.95065 0.94828 1.69888 1.28621 1.21923 1.31228 0.86817 0.81496 0.82609 0.77930 1.20462 1.21464 1.20483 1.20770 0.93536 0.92422 0.95610 1.20951 1.00451 0.99401 0.92439 1.20983 1.01493 0.94609 0.97972 1.20799 1.04368 0.94671 0.97520 1.20987 1.01232 0.98892 0.93564 1.21097 1.00477 0.94930 0.97226 0.92932 0.92869 0.92878 0.91883 0.91547 0.91541 0.90821 0.91378 0.91644 0.91709 0.93254 0.77463 0.77545 0.90683 0.91761 0.93125 0.86907 0.87688 0.87819 0.87662 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.18 5.82 -26.73 -0.16 -1.34 16 3 C -0.12 -1.18 4.75 -26.73 -0.13 -1.30 16 4 C 0.15 1.93 2.26 -67.93 -0.15 1.78 16 5 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 6 C -0.13 -1.79 5.26 -26.73 -0.14 -1.93 16 7 C 0.08 1.35 5.65 37.16 0.21 1.56 16 8 O -0.59 -10.22 13.66 -35.23 -0.48 -10.70 16 9 N -0.74 -10.31 4.48 -53.80 -0.24 -10.55 16 10 C 0.51 9.48 6.15 -10.99 -0.07 9.41 16 11 O -0.49 -11.30 12.12 5.55 0.07 -11.23 16 12 C -0.12 -2.28 4.94 -27.88 -0.14 -2.42 16 13 C 0.08 1.85 1.69 -92.92 -0.16 1.69 16 14 H 0.07 1.94 6.94 -51.93 -0.36 1.58 16 15 C -0.49 -12.66 6.38 -34.44 -0.22 -12.88 16 16 H 0.05 1.26 7.82 -52.49 -0.41 0.85 16 17 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 18 N -0.88 -25.32 12.85 55.43 0.71 -24.61 16 19 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 24 C -0.11 -2.27 8.86 -39.58 -0.35 -2.62 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.16 -2.68 10.05 -39.58 -0.40 -3.08 16 27 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 28 C -0.12 -2.48 9.67 -39.58 -0.38 -2.86 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.32 5.65 -51.93 -0.29 1.03 16 39 H 0.05 0.95 7.85 -51.93 -0.41 0.54 16 40 H 0.38 5.57 9.12 45.56 0.42 5.99 16 41 H 0.39 4.33 8.60 -40.82 -0.35 3.98 16 42 H 0.07 1.30 7.76 -51.93 -0.40 0.90 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.11 2.17 7.75 -52.49 -0.41 1.76 16 46 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 49 H 0.11 2.40 7.95 -52.49 -0.42 1.98 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -31.19 396.21 -9.74 -40.92 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.64 Total: 12.92 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.10 Total: -19.28 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.47 Total: -35.16 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.41 Total: -21.93 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.19 -9.74 -40.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601714829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.778 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds