Wall clock time and date at job start Tue Mar 31 2020 13:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46902 * 2 1 4 4 C 1.53006 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.46844 * 54.99562 * 4 3 2 6 6 C 1.52997 * 109.47245 * 174.99688 * 4 3 2 7 7 C 1.53002 * 109.47236 * 184.99972 * 6 4 3 8 8 O 1.42892 * 109.47597 * 180.02562 * 7 6 4 9 9 N 1.46503 * 109.47143 * 295.00038 * 4 3 2 10 10 C 1.34769 * 120.00260 * 154.99628 * 9 4 3 11 11 O 1.21285 * 119.99717 * 359.97438 * 10 9 4 12 12 C 1.50695 * 120.00104 * 179.97438 * 10 9 4 13 13 C 1.53007 * 109.47271 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46886 * 305.00350 * 13 12 10 15 15 C 1.50702 * 109.46995 * 64.99843 * 13 12 10 16 16 H 1.08001 * 119.99935 * 29.64127 * 15 13 12 17 17 C 1.37874 * 120.00007 * 209.63766 * 15 13 12 18 18 N 1.31513 * 120.00007 * 4.98578 * 17 15 13 19 19 Si 1.86804 * 119.99867 * 184.99171 * 17 15 13 20 20 H 1.48495 * 109.47217 * 59.99460 * 19 17 15 21 21 H 1.48500 * 109.47220 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46714 * 299.99551 * 19 17 15 23 23 C 1.50699 * 109.47425 * 184.99925 * 13 12 10 24 24 C 1.38234 * 119.99727 * 296.81589 * 23 13 12 25 25 C 1.38242 * 119.99473 * 179.78923 * 24 23 13 26 26 C 1.38236 * 120.00094 * 0.43007 * 25 24 23 27 27 C 1.38238 * 119.99769 * 359.82383 * 26 25 24 28 28 C 1.38230 * 120.00347 * 359.96632 * 27 26 25 29 29 H 1.09003 * 109.47170 * 60.00442 * 1 2 3 30 30 H 1.09001 * 109.46754 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47123 * 300.00022 * 1 2 3 32 32 H 1.08994 * 109.47130 * 239.99572 * 2 1 3 33 33 H 1.09003 * 109.47170 * 119.99557 * 2 1 3 34 34 H 1.08994 * 109.47577 * 59.99845 * 3 2 1 35 35 H 1.09002 * 109.47363 * 299.99656 * 3 2 1 36 36 H 1.08999 * 109.47200 * 305.00002 * 6 4 3 37 37 H 1.08998 * 109.47114 * 65.00000 * 6 4 3 38 38 H 1.08998 * 109.46738 * 300.00567 * 7 6 4 39 39 H 1.09002 * 109.46640 * 59.99711 * 7 6 4 40 40 H 0.96695 * 114.00452 * 179.97438 * 8 7 6 41 41 H 0.97002 * 119.99711 * 335.00139 * 9 4 3 42 42 H 1.08999 * 109.47575 * 300.00168 * 12 10 9 43 43 H 1.08998 * 109.47025 * 60.00693 * 12 10 9 44 44 H 0.97000 * 119.99832 * 179.97438 * 18 17 15 45 45 H 1.07995 * 120.00302 * 359.97438 * 24 23 13 46 46 H 1.08000 * 120.00036 * 180.27606 * 25 24 23 47 47 H 1.08000 * 119.99982 * 179.83770 * 26 25 24 48 48 H 1.08004 * 119.99387 * 180.02562 * 27 26 25 49 49 H 1.08001 * 120.00165 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0800 2.8795 -0.1252 7 6 5.6049 2.8705 -0.2499 8 8 6.0813 4.2125 -0.3668 9 7 4.0578 0.8590 1.2528 10 6 5.2797 0.2925 1.3012 11 8 5.9753 0.2654 0.3079 12 6 5.7817 -0.3072 2.5893 13 6 7.1847 -0.8784 2.3733 14 1 7.1655 -1.5848 1.5434 15 6 8.1403 0.2430 2.0565 16 1 7.9644 1.2312 2.4552 17 6 9.2391 0.0074 1.2578 18 7 9.4011 -1.1690 0.6926 19 14 10.4979 1.3591 0.9786 20 1 11.0821 1.7682 2.2811 21 1 11.5749 0.8564 0.0884 22 1 9.8368 2.5276 0.3437 23 6 7.6373 -1.5856 3.6247 24 6 7.8033 -0.8749 4.7986 25 6 8.2143 -1.5245 5.9476 26 6 8.4678 -2.8832 5.9204 27 6 8.3068 -3.5929 4.7450 28 6 7.8916 -2.9441 3.5972 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 3.6457 3.3430 -1.0110 37 1 3.7912 3.4463 0.7600 38 1 6.0391 2.4069 0.6359 39 1 5.8936 2.3036 -1.1350 40 1 7.0422 4.2830 -0.4494 41 1 3.5013 0.8804 2.0470 42 1 5.8182 0.4636 3.3591 43 1 5.1091 -1.1046 2.9052 44 1 10.1741 -1.3346 0.1304 45 1 7.6091 0.1872 4.8189 46 1 8.3398 -0.9701 6.8659 47 1 8.7914 -3.3902 6.8174 48 1 8.5044 -4.6545 4.7239 49 1 7.7654 -3.4987 2.6791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601714829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:52 Heat of formation + Delta-G solvation = -109.468915 kcal Electronic energy + Delta-G solvation = -27755.458394 eV Core-core repulsion = 24066.480267 eV Total energy + Delta-G solvation = -3688.978127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95857 -39.82360 -38.11108 -37.21465 -35.71823 -34.29548 -33.43495 -32.38767 -31.49630 -30.18967 -28.90662 -27.36687 -24.87659 -24.30448 -23.14593 -22.15828 -21.89211 -21.44682 -20.81074 -18.53748 -18.36270 -17.82614 -17.44485 -17.10949 -16.46663 -16.08287 -15.74926 -15.65775 -15.45422 -15.31605 -15.05880 -14.55512 -14.45812 -14.17978 -13.99061 -13.90296 -13.68792 -13.49520 -13.24766 -13.07467 -12.82271 -12.80361 -12.54517 -12.51064 -12.32485 -12.27907 -11.85478 -11.81619 -11.65915 -11.52185 -11.47521 -11.26543 -10.96264 -10.88187 -10.51952 -10.28601 -9.82006 -9.54110 -9.18668 -8.01030 -6.03129 0.78030 0.84483 1.37359 1.38116 1.43599 2.07407 2.46833 2.48417 3.18491 3.19475 3.38007 3.93241 4.02999 4.08855 4.20371 4.25533 4.26507 4.35475 4.38935 4.42868 4.54546 4.57343 4.61145 4.67388 4.75590 4.77847 4.81169 4.87459 4.93686 4.98638 5.00861 5.05630 5.11673 5.20031 5.26887 5.31965 5.38142 5.39957 5.52214 5.53386 5.68882 5.78731 5.81653 5.84205 5.97134 6.19796 6.43788 6.47640 6.67874 6.88875 7.04064 7.58476 7.71225 9.08224 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.004689 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.637982 B = 5970.357484 C = 7868.408640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.111 4.111 4 C 0.151 3.849 5 H 0.059 0.941 6 C -0.118 4.118 7 C 0.080 3.920 8 O -0.593 6.593 9 N -0.723 5.723 10 C 0.510 3.490 11 O -0.545 6.545 12 C -0.118 4.118 13 C 0.083 3.917 14 H 0.024 0.976 15 C -0.476 4.476 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.929 3.071 20 H -0.271 1.271 21 H -0.293 1.293 22 H -0.274 1.274 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.024 0.976 40 H 0.387 0.613 41 H 0.410 0.590 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.252 0.748 45 H 0.115 0.885 46 H 0.140 0.860 47 H 0.143 0.857 48 H 0.131 0.869 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 2.876 5.536 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.149 4.149 4 C 0.046 3.954 5 H 0.077 0.923 6 C -0.157 4.157 7 C 0.003 3.997 8 O -0.400 6.400 9 N -0.378 5.378 10 C 0.298 3.702 11 O -0.420 6.420 12 C -0.158 4.158 13 C 0.064 3.936 14 H 0.043 0.957 15 C -0.514 4.514 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.756 3.244 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.199 1.199 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.166 4.166 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.235 0.765 41 H 0.246 0.754 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.133 0.867 46 H 0.158 0.842 47 H 0.161 0.839 48 H 0.149 0.851 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.357 2.886 4.727 16.325 hybrid contribution 1.807 0.294 -0.545 1.910 sum -13.550 3.180 4.182 14.533 Atomic orbital electron populations 1.21738 0.94436 1.01879 1.02405 1.21509 0.96754 0.96292 1.01732 1.21810 0.90724 0.97860 1.04489 1.20866 0.95309 0.91935 0.87322 0.92269 1.21933 0.92596 0.97575 1.03581 1.22297 0.96321 0.81677 0.99414 1.86270 1.28289 1.28401 1.97014 1.46049 1.17445 1.60590 1.13728 1.20888 0.80910 0.77515 0.90909 1.90758 1.56301 1.57237 1.37744 1.21661 0.98355 1.00917 0.94858 1.17596 0.90522 0.94868 0.90590 0.95739 1.20860 1.07657 0.94503 1.28417 0.93773 1.25444 0.99868 0.96627 0.95505 1.70046 1.29047 1.23678 1.32882 0.86073 0.79652 0.80737 0.77948 1.19632 1.21950 1.19917 1.20606 0.95297 0.93008 0.95735 1.21040 1.01210 0.99583 0.92637 1.21376 0.99679 0.95148 0.98316 1.21259 1.02478 0.94603 0.98262 1.21282 1.00120 1.00308 0.92982 1.21105 1.02277 0.95037 0.97799 0.92285 0.92817 0.91772 0.93430 0.92200 0.89416 0.89308 0.89705 0.90394 0.94603 0.95729 0.76466 0.75406 0.88998 0.89420 0.93949 0.86661 0.84227 0.83946 0.85145 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.18 5.82 30.59 0.18 -2.00 16 3 C -0.11 -1.85 4.75 30.60 0.15 -1.71 16 4 C 0.15 3.81 2.26 44.99 0.10 3.92 16 5 H 0.06 1.87 7.58 -2.38 -0.02 1.85 16 6 C -0.12 -3.20 5.26 30.59 0.16 -3.04 16 7 C 0.08 2.92 5.65 71.98 0.41 3.33 16 8 O -0.59 -20.44 13.66 -148.98 -2.03 -22.47 16 9 N -0.72 -19.57 4.48 -442.53 -1.98 -21.56 16 10 C 0.51 19.45 6.15 87.66 0.54 19.99 16 11 O -0.54 -26.57 12.12 -3.05 -0.04 -26.61 16 12 C -0.12 -4.41 4.94 29.85 0.15 -4.27 16 13 C 0.08 4.02 1.69 -12.28 -0.02 3.99 16 14 H 0.02 1.40 6.94 -2.39 -0.02 1.39 16 15 C -0.48 -25.54 6.38 25.60 0.16 -25.37 16 16 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 17 C 0.02 1.37 5.45 84.65 0.46 1.84 16 18 N -0.92 -55.87 12.85 21.45 0.28 -55.59 16 19 Si 0.93 45.57 29.54 68.60 2.03 47.59 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 22 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 23 C -0.05 -2.02 4.77 -19.87 -0.09 -2.11 16 24 C -0.13 -4.88 8.86 22.27 0.20 -4.68 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.15 -4.58 10.05 22.27 0.22 -4.36 16 27 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 28 C -0.14 -6.13 9.67 22.27 0.22 -5.92 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.11 7.75 -2.39 -0.02 1.09 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.04 1.51 5.65 -2.39 -0.01 1.50 16 39 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 40 H 0.39 11.50 9.12 -74.06 -0.68 10.83 16 41 H 0.41 8.22 8.60 -92.71 -0.80 7.42 16 42 H 0.09 3.11 7.76 -2.39 -0.02 3.09 16 43 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.12 4.28 7.75 -2.91 -0.02 4.26 16 46 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 47 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 48 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 49 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -72.38 396.21 1.69 -70.69 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.54 Total: 37.77 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.99 Total: -29.82 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -1.71 Total: -77.15 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -2.07 Total: -49.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.38 1.69 -70.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601714829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.778 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds