Wall clock time and date at job start Tue Mar 31 2020 13:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46654 * 2 1 4 4 C 1.53004 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47511 * 305.00451 * 4 3 2 6 6 C 1.53003 * 109.47268 * 185.00232 * 4 3 2 7 7 C 1.52997 * 109.46995 * 175.00677 * 6 4 3 8 8 O 1.42896 * 109.47009 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.46716 * 65.00317 * 4 3 2 10 10 C 1.34778 * 120.00236 * 204.99724 * 9 4 3 11 11 O 1.21284 * 119.99726 * 0.02562 * 10 9 4 12 12 C 1.50699 * 120.00314 * 179.97438 * 10 9 4 13 13 C 1.53002 * 109.47147 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47107 * 55.00453 * 13 12 10 15 15 C 1.50698 * 109.46936 * 295.00348 * 13 12 10 16 16 H 1.07999 * 120.00475 * 325.83810 * 15 13 12 17 17 C 1.37881 * 119.99718 * 145.84441 * 15 13 12 18 18 N 1.31512 * 120.00451 * 6.11127 * 17 15 13 19 19 Si 1.86810 * 119.99920 * 186.11866 * 17 15 13 20 20 H 1.48501 * 109.46904 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47306 * 119.99605 * 19 17 15 22 22 H 1.48497 * 109.46777 * 239.99903 * 19 17 15 23 23 C 1.50694 * 109.47061 * 175.00358 * 13 12 10 24 24 C 1.38230 * 120.00098 * 63.46763 * 23 13 12 25 25 C 1.38239 * 120.00052 * 179.78991 * 24 23 13 26 26 C 1.38241 * 119.99821 * 0.43708 * 25 24 23 27 27 C 1.38229 * 119.99812 * 359.81932 * 26 25 24 28 28 C 1.38235 * 120.00006 * 243.73990 * 23 13 12 29 29 H 1.09002 * 109.47304 * 59.99559 * 1 2 3 30 30 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47510 * 299.99372 * 1 2 3 32 32 H 1.08993 * 109.47015 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.46927 * 119.99838 * 2 1 3 34 34 H 1.09003 * 109.47096 * 60.00390 * 3 2 1 35 35 H 1.08993 * 109.47519 * 300.00072 * 3 2 1 36 36 H 1.08998 * 109.47141 * 55.00130 * 6 4 3 37 37 H 1.09004 * 109.46842 * 295.00288 * 6 4 3 38 38 H 1.09004 * 109.47008 * 299.99509 * 7 6 4 39 39 H 1.08998 * 109.47622 * 59.99748 * 7 6 4 40 40 H 0.96708 * 114.00147 * 179.97438 * 8 7 6 41 41 H 0.97002 * 119.99868 * 25.00256 * 9 4 3 42 42 H 1.08993 * 109.47237 * 300.00652 * 12 10 9 43 43 H 1.09005 * 109.46639 * 60.00609 * 12 10 9 44 44 H 0.96997 * 120.00561 * 180.02562 * 18 17 15 45 45 H 1.08005 * 120.00128 * 359.97438 * 24 23 13 46 46 H 1.08005 * 120.00246 * 180.27824 * 25 24 23 47 47 H 1.07995 * 120.00013 * 179.83381 * 26 25 24 48 48 H 1.08007 * 119.99998 * 180.02562 * 27 26 25 49 49 H 1.08005 * 120.00171 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0798 2.8797 0.1264 7 6 5.6046 2.8706 0.2523 8 8 6.0808 4.2127 0.3704 9 7 4.0587 0.8588 -1.2509 10 6 5.2808 0.2923 -1.2983 11 8 5.9756 0.2655 -0.3046 12 6 5.7834 -0.3088 -2.5856 13 6 7.1857 -0.8806 -2.3681 14 1 7.1655 -1.5865 -1.5377 15 6 8.1418 0.2404 -2.0514 16 1 8.0083 1.2095 -2.5090 17 6 9.1871 0.0288 -1.1776 18 7 9.4222 -1.1792 -0.7137 19 14 10.2692 1.4580 -0.6522 20 1 9.7989 2.7031 -1.3108 21 1 10.1953 1.6191 0.8222 22 1 11.6739 1.1878 -1.0509 23 6 7.6388 -1.5891 -3.6186 24 6 7.8118 -0.8784 -4.7915 25 6 8.2316 -1.5275 -5.9375 26 6 8.4696 -2.8891 -5.9128 27 6 8.2915 -3.6007 -4.7412 28 6 7.8759 -2.9507 -3.5941 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.6448 3.3434 1.0118 37 1 3.7917 3.4462 -0.7591 38 1 5.8927 2.3041 1.1379 39 1 6.0396 2.4069 -0.6331 40 1 7.0416 4.2832 0.4545 41 1 3.5029 0.8800 -2.0456 42 1 5.1109 -1.1064 -2.9010 43 1 5.8201 0.4614 -3.3561 44 1 10.1574 -1.3280 -0.0987 45 1 7.6219 0.1847 -4.8118 46 1 8.3711 -0.9714 -6.8528 47 1 8.7950 -3.3967 -6.8088 48 1 8.4779 -4.6643 -4.7218 49 1 7.7369 -3.5068 -2.6787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601714832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:02 Heat of formation + Delta-G solvation = -89.955419 kcal Electronic energy + Delta-G solvation = -27779.861194 eV Core-core repulsion = 24091.729235 eV Total energy + Delta-G solvation = -3688.131958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.55804 -38.33103 -36.76451 -35.99331 -34.00082 -33.24969 -31.63433 -31.00511 -30.00322 -28.70856 -27.88788 -25.53122 -23.65421 -22.77367 -21.64509 -21.06422 -20.83496 -20.08889 -19.23003 -17.01600 -16.67047 -16.28181 -16.16354 -15.71232 -14.97434 -14.55805 -14.48862 -14.16918 -14.06603 -13.92679 -13.75827 -13.30583 -13.18923 -12.93603 -12.57052 -12.43916 -12.32663 -12.01388 -11.91475 -11.72339 -11.58323 -11.38698 -11.20583 -10.96329 -10.89463 -10.77940 -10.69515 -10.56815 -10.37655 -10.25341 -10.05545 -9.46845 -9.43219 -9.05446 -8.85590 -8.51780 -8.34899 -8.04195 -7.60368 -5.95181 -3.94337 2.29123 2.35086 3.33308 3.41027 3.42001 3.54402 3.72858 4.34126 4.48995 4.75479 4.89482 4.92070 4.96337 5.28415 5.33263 5.40019 5.46365 5.54813 5.65089 5.66541 5.69747 5.73057 5.75494 5.84268 5.87748 5.93495 6.00161 6.09191 6.11478 6.15441 6.20710 6.24030 6.29134 6.41208 6.42723 6.48217 6.54444 6.81502 6.91494 6.99992 7.05308 7.31390 7.44814 7.53263 7.84735 7.95063 7.98295 8.04485 8.13327 8.37987 9.05620 9.10319 9.67347 11.15074 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.004759 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.242428 B = 5882.302332 C = 7809.636908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.123 4.123 4 C 0.149 3.851 5 H 0.087 0.913 6 C -0.126 4.126 7 C 0.075 3.925 8 O -0.589 6.589 9 N -0.744 5.744 10 C 0.512 3.488 11 O -0.494 6.494 12 C -0.124 4.124 13 C 0.081 3.919 14 H 0.072 0.928 15 C -0.489 4.489 16 H 0.050 0.950 17 C 0.080 3.920 18 N -0.880 5.880 19 Si 0.882 3.118 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.287 1.287 23 C -0.021 4.021 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.378 0.622 41 H 0.392 0.608 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.258 0.742 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 1.927 -2.734 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.161 4.161 4 C 0.043 3.957 5 H 0.105 0.895 6 C -0.165 4.165 7 C -0.002 4.002 8 O -0.395 6.395 9 N -0.400 5.400 10 C 0.299 3.701 11 O -0.366 6.366 12 C -0.164 4.164 13 C 0.062 3.938 14 H 0.090 0.910 15 C -0.527 4.527 16 H 0.068 0.932 17 C -0.124 4.124 18 N -0.517 5.517 19 Si 0.710 3.290 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.214 1.214 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.225 0.775 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.673 1.913 -1.893 13.935 hybrid contribution 1.212 0.659 -0.062 1.381 sum -12.460 2.572 -1.955 12.872 Atomic orbital electron populations 1.21776 0.96060 1.01499 1.01551 1.21519 0.95380 0.96576 1.02741 1.21860 0.94066 0.97423 1.02729 1.20792 0.92853 0.93098 0.88931 0.89522 1.21950 0.95437 0.96840 1.02273 1.22409 0.93873 0.82013 1.01952 1.86296 1.27208 1.28822 1.97143 1.46316 1.18902 1.62263 1.12473 1.20860 0.79966 0.77576 0.91652 1.90753 1.54513 1.55130 1.36182 1.21806 1.00442 0.99870 0.94301 1.17829 0.88492 0.96326 0.91189 0.91009 1.20689 1.10961 0.95392 1.25621 0.93211 1.24792 0.97071 0.94967 0.95530 1.69914 1.29798 1.20001 1.32016 0.86709 0.80391 0.83313 0.78551 1.19880 1.21040 1.21388 1.20739 0.93473 0.92422 0.95496 1.20943 1.00536 0.99397 0.92486 1.20978 1.01444 0.94580 0.97996 1.20792 1.04447 0.94613 0.97560 1.20983 1.01175 0.98870 0.93600 1.21086 1.00544 0.94888 0.97185 0.92873 0.92867 0.92933 0.91543 0.91889 0.90824 0.91524 0.91362 0.91615 0.93264 0.91657 0.77519 0.77520 0.91763 0.90665 0.93216 0.86956 0.87704 0.87835 0.87677 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.18 5.82 -26.73 -0.16 -1.33 16 3 C -0.12 -1.17 4.75 -26.73 -0.13 -1.30 16 4 C 0.15 1.92 2.26 -67.93 -0.15 1.77 16 5 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 6 C -0.13 -1.78 5.26 -26.73 -0.14 -1.92 16 7 C 0.07 1.32 5.65 37.16 0.21 1.53 16 8 O -0.59 -10.15 13.66 -35.23 -0.48 -10.63 16 9 N -0.74 -10.26 4.48 -53.80 -0.24 -10.50 16 10 C 0.51 9.46 6.15 -10.99 -0.07 9.40 16 11 O -0.49 -11.28 12.12 5.55 0.07 -11.21 16 12 C -0.12 -2.29 4.95 -27.88 -0.14 -2.43 16 13 C 0.08 1.86 1.67 -92.93 -0.16 1.71 16 14 H 0.07 1.92 6.98 -51.93 -0.36 1.55 16 15 C -0.49 -12.66 6.37 -34.44 -0.22 -12.88 16 16 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 17 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 18 N -0.88 -25.36 12.87 55.43 0.71 -24.65 16 19 Si 0.88 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.02 -0.45 4.77 -104.63 -0.50 -0.95 16 24 C -0.12 -2.30 8.86 -39.58 -0.35 -2.65 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 26 C -0.16 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 28 C -0.12 -2.48 9.67 -39.58 -0.38 -2.86 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 39 H 0.07 1.33 5.65 -51.93 -0.29 1.03 16 40 H 0.38 5.50 9.12 45.56 0.42 5.92 16 41 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.30 7.78 -51.93 -0.40 0.90 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.11 2.16 7.76 -52.48 -0.41 1.75 16 46 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 47 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 48 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 49 H 0.11 2.38 7.95 -52.48 -0.42 1.97 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -31.28 396.27 -9.74 -41.02 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -7.64 Total: 12.68 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -3.10 Total: -19.25 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.47 Total: -35.15 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.41 Total: -21.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.28 -9.74 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601714832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.935 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds