Wall clock time and date at job start Tue Mar 31 2020 13:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46654 * 2 1 4 4 C 1.53004 * 109.47026 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47511 * 305.00451 * 4 3 2 6 6 C 1.53003 * 109.47268 * 185.00232 * 4 3 2 7 7 C 1.52997 * 109.46995 * 175.00677 * 6 4 3 8 8 O 1.42896 * 109.47009 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.46716 * 65.00317 * 4 3 2 10 10 C 1.34778 * 120.00236 * 204.99724 * 9 4 3 11 11 O 1.21284 * 119.99726 * 0.02562 * 10 9 4 12 12 C 1.50699 * 120.00314 * 179.97438 * 10 9 4 13 13 C 1.53002 * 109.47147 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47107 * 55.00453 * 13 12 10 15 15 C 1.50698 * 109.46936 * 295.00348 * 13 12 10 16 16 H 1.07999 * 120.00475 * 325.83810 * 15 13 12 17 17 C 1.37881 * 119.99718 * 145.84441 * 15 13 12 18 18 N 1.31512 * 120.00451 * 6.11127 * 17 15 13 19 19 Si 1.86810 * 119.99920 * 186.11866 * 17 15 13 20 20 H 1.48501 * 109.46904 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47306 * 119.99605 * 19 17 15 22 22 H 1.48497 * 109.46777 * 239.99903 * 19 17 15 23 23 C 1.50694 * 109.47061 * 175.00358 * 13 12 10 24 24 C 1.38230 * 120.00098 * 63.46763 * 23 13 12 25 25 C 1.38239 * 120.00052 * 179.78991 * 24 23 13 26 26 C 1.38241 * 119.99821 * 0.43708 * 25 24 23 27 27 C 1.38229 * 119.99812 * 359.81932 * 26 25 24 28 28 C 1.38235 * 120.00006 * 243.73990 * 23 13 12 29 29 H 1.09002 * 109.47304 * 59.99559 * 1 2 3 30 30 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47510 * 299.99372 * 1 2 3 32 32 H 1.08993 * 109.47015 * 240.00317 * 2 1 3 33 33 H 1.08997 * 109.46927 * 119.99838 * 2 1 3 34 34 H 1.09003 * 109.47096 * 60.00390 * 3 2 1 35 35 H 1.08993 * 109.47519 * 300.00072 * 3 2 1 36 36 H 1.08998 * 109.47141 * 55.00130 * 6 4 3 37 37 H 1.09004 * 109.46842 * 295.00288 * 6 4 3 38 38 H 1.09004 * 109.47008 * 299.99509 * 7 6 4 39 39 H 1.08998 * 109.47622 * 59.99748 * 7 6 4 40 40 H 0.96708 * 114.00147 * 179.97438 * 8 7 6 41 41 H 0.97002 * 119.99868 * 25.00256 * 9 4 3 42 42 H 1.08993 * 109.47237 * 300.00652 * 12 10 9 43 43 H 1.09005 * 109.46639 * 60.00609 * 12 10 9 44 44 H 0.96997 * 120.00561 * 180.02562 * 18 17 15 45 45 H 1.08005 * 120.00128 * 359.97438 * 24 23 13 46 46 H 1.08005 * 120.00246 * 180.27824 * 25 24 23 47 47 H 1.07995 * 120.00013 * 179.83381 * 26 25 24 48 48 H 1.08007 * 119.99998 * 180.02562 * 27 26 25 49 49 H 1.08005 * 120.00171 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0798 2.8797 0.1264 7 6 5.6046 2.8706 0.2523 8 8 6.0808 4.2127 0.3704 9 7 4.0587 0.8588 -1.2509 10 6 5.2808 0.2923 -1.2983 11 8 5.9756 0.2655 -0.3046 12 6 5.7834 -0.3088 -2.5856 13 6 7.1857 -0.8806 -2.3681 14 1 7.1655 -1.5865 -1.5377 15 6 8.1418 0.2404 -2.0514 16 1 8.0083 1.2095 -2.5090 17 6 9.1871 0.0288 -1.1776 18 7 9.4222 -1.1792 -0.7137 19 14 10.2692 1.4580 -0.6522 20 1 9.7989 2.7031 -1.3108 21 1 10.1953 1.6191 0.8222 22 1 11.6739 1.1878 -1.0509 23 6 7.6388 -1.5891 -3.6186 24 6 7.8118 -0.8784 -4.7915 25 6 8.2316 -1.5275 -5.9375 26 6 8.4696 -2.8891 -5.9128 27 6 8.2915 -3.6007 -4.7412 28 6 7.8759 -2.9507 -3.5941 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.6448 3.3434 1.0118 37 1 3.7917 3.4462 -0.7591 38 1 5.8927 2.3041 1.1379 39 1 6.0396 2.4069 -0.6331 40 1 7.0416 4.2832 0.4545 41 1 3.5029 0.8800 -2.0456 42 1 5.1109 -1.1064 -2.9010 43 1 5.8201 0.4614 -3.3561 44 1 10.1574 -1.3280 -0.0987 45 1 7.6219 0.1847 -4.8118 46 1 8.3711 -0.9714 -6.8528 47 1 8.7950 -3.3967 -6.8088 48 1 8.4779 -4.6643 -4.7218 49 1 7.7369 -3.5068 -2.6787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601714832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:01 Heat of formation + Delta-G solvation = -109.796578 kcal Electronic energy + Delta-G solvation = -27780.721571 eV Core-core repulsion = 24091.729235 eV Total energy + Delta-G solvation = -3688.992335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95971 -39.81718 -38.11346 -37.21714 -35.71893 -34.29752 -33.44318 -32.38901 -31.48874 -30.18414 -28.90858 -27.37121 -24.88083 -24.30845 -23.14318 -22.15480 -21.89257 -21.44577 -20.81573 -18.53427 -18.36207 -17.84365 -17.44645 -17.10713 -16.46796 -16.08743 -15.75302 -15.65893 -15.45679 -15.31423 -15.06032 -14.56012 -14.46477 -14.19499 -13.98874 -13.91798 -13.65219 -13.49161 -13.25533 -13.06803 -12.89272 -12.81500 -12.55943 -12.44455 -12.32520 -12.27936 -11.84410 -11.80948 -11.66387 -11.52125 -11.47638 -11.29071 -10.92298 -10.88418 -10.57716 -10.26537 -9.82286 -9.53312 -9.17376 -8.02835 -6.04409 0.78783 0.85479 1.34584 1.36984 1.44756 2.07033 2.46203 2.48287 3.18327 3.20131 3.38133 3.93068 4.02926 4.08774 4.20283 4.25546 4.26981 4.35821 4.38961 4.43133 4.54562 4.57335 4.60799 4.67761 4.75720 4.77880 4.81088 4.87355 4.94316 4.98600 5.01203 5.05682 5.11539 5.20171 5.27653 5.31932 5.38213 5.40136 5.52115 5.54711 5.66284 5.78642 5.81689 5.84876 5.96962 6.19323 6.43923 6.48214 6.67810 6.88727 7.03676 7.58194 7.70677 9.07075 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.004759 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.242428 B = 5882.302332 C = 7809.636908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.111 4.111 4 C 0.151 3.849 5 H 0.059 0.941 6 C -0.118 4.118 7 C 0.079 3.921 8 O -0.592 6.592 9 N -0.723 5.723 10 C 0.511 3.489 11 O -0.546 6.546 12 C -0.118 4.118 13 C 0.084 3.916 14 H 0.024 0.976 15 C -0.475 4.475 16 H 0.045 0.955 17 C 0.026 3.974 18 N -0.918 5.918 19 Si 0.928 3.072 20 H -0.262 1.262 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.044 4.044 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.037 0.963 40 H 0.387 0.613 41 H 0.410 0.590 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.252 0.748 45 H 0.115 0.885 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.130 0.870 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 2.956 -5.397 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.149 4.149 4 C 0.046 3.954 5 H 0.078 0.922 6 C -0.157 4.157 7 C 0.002 3.998 8 O -0.399 6.399 9 N -0.378 5.378 10 C 0.299 3.701 11 O -0.422 6.422 12 C -0.158 4.158 13 C 0.065 3.935 14 H 0.042 0.958 15 C -0.513 4.513 16 H 0.063 0.937 17 C -0.172 4.172 18 N -0.558 5.558 19 Si 0.756 3.244 20 H -0.185 1.185 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.235 0.765 41 H 0.246 0.754 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.061 0.939 45 H 0.133 0.867 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.148 0.852 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.543 2.975 -4.596 16.479 hybrid contribution 1.735 0.306 0.693 1.893 sum -13.808 3.281 -3.904 14.720 Atomic orbital electron populations 1.21738 0.94449 1.01876 1.02402 1.21508 0.96745 0.96295 1.01733 1.21810 0.90735 0.97856 1.04486 1.20868 0.95295 0.91941 0.87341 0.92239 1.21934 0.92601 0.97574 1.03593 1.22315 0.96372 0.81706 0.99454 1.86279 1.28291 1.28384 1.96992 1.46051 1.17443 1.60567 1.13734 1.20883 0.80884 0.77469 0.90877 1.90746 1.56380 1.57349 1.37714 1.21675 0.98372 1.00910 0.94876 1.17608 0.90561 0.94693 0.90650 0.95778 1.20930 1.10388 0.95801 1.24203 0.93670 1.25427 0.98792 0.96583 0.96440 1.70055 1.30642 1.21594 1.33465 0.85963 0.79017 0.81686 0.77754 1.18546 1.21805 1.21397 1.20591 0.95238 0.93015 0.95657 1.21031 1.01280 0.99576 0.92681 1.21371 0.99643 0.95130 0.98336 1.21252 1.02564 0.94559 0.98298 1.21280 1.00070 1.00301 0.93021 1.21099 1.02338 0.94983 0.97777 0.91773 0.92821 0.92296 0.92186 0.93433 0.89326 0.89408 0.89704 0.90381 0.95694 0.94506 0.76477 0.75391 0.89411 0.88997 0.93940 0.86709 0.84243 0.83974 0.85160 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.13 -2.17 5.82 30.59 0.18 -1.99 16 3 C -0.11 -1.84 4.75 30.60 0.15 -1.70 16 4 C 0.15 3.78 2.26 44.99 0.10 3.89 16 5 H 0.06 1.86 7.58 -2.39 -0.02 1.85 16 6 C -0.12 -3.19 5.26 30.59 0.16 -3.03 16 7 C 0.08 2.85 5.65 71.98 0.41 3.26 16 8 O -0.59 -20.26 13.66 -148.98 -2.03 -22.29 16 9 N -0.72 -19.44 4.48 -442.52 -1.98 -21.42 16 10 C 0.51 19.37 6.15 87.66 0.54 19.91 16 11 O -0.55 -26.41 12.12 -3.04 -0.04 -26.45 16 12 C -0.12 -4.41 4.95 29.85 0.15 -4.26 16 13 C 0.08 4.04 1.67 -12.29 -0.02 4.02 16 14 H 0.02 1.38 6.98 -2.38 -0.02 1.36 16 15 C -0.48 -25.45 6.37 25.60 0.16 -25.29 16 16 H 0.05 2.40 7.82 -2.91 -0.02 2.38 16 17 C 0.03 1.49 5.45 84.66 0.46 1.95 16 18 N -0.92 -55.90 12.87 21.45 0.28 -55.63 16 19 Si 0.93 45.80 29.54 68.60 2.03 47.83 16 20 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 23 C -0.04 -1.96 4.77 -19.87 -0.09 -2.05 16 24 C -0.13 -4.92 8.86 22.27 0.20 -4.73 16 25 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 26 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16 27 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 28 C -0.14 -6.13 9.67 22.27 0.22 -5.91 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.11 7.75 -2.39 -0.02 1.09 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 39 H 0.04 1.54 5.65 -2.39 -0.01 1.53 16 40 H 0.39 11.32 9.12 -74.05 -0.68 10.64 16 41 H 0.41 8.15 8.60 -92.71 -0.80 7.36 16 42 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.09 3.10 7.78 -2.38 -0.02 3.08 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.11 4.27 7.76 -2.91 -0.02 4.25 16 46 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 49 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -72.45 396.27 1.69 -70.76 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.54 Total: 36.96 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 3.99 Total: -29.76 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.71 Total: -77.05 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -2.07 Total: -48.74 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.45 1.69 -70.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601714832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.038 kcal (2) G-P(sol) polarization free energy of solvation -72.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds