Wall clock time and date at job start Tue Mar 31 2020 12:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 C 1.53008 * 109.46960 * 240.00021 * 2 1 3 5 5 C 1.53005 * 109.46953 * 120.00566 * 2 1 3 6 6 N 1.46895 * 109.47371 * 81.26901 * 5 2 1 7 7 C 1.46904 * 110.99710 * 313.05330 * 6 5 2 8 8 C 1.50697 * 109.47085 * 297.46169 * 7 6 5 9 9 H 1.08000 * 119.99992 * 4.47620 * 8 7 6 10 10 C 1.37883 * 120.00222 * 184.46672 * 8 7 6 11 11 N 1.31515 * 119.99536 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00027 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46624 * 90.00529 * 12 10 8 14 14 H 1.48496 * 109.46908 * 210.00192 * 12 10 8 15 15 H 1.48495 * 109.47502 * 330.00264 * 12 10 8 16 16 C 1.46897 * 111.00135 * 77.00570 * 6 5 2 17 17 C 1.52998 * 109.47083 * 84.74299 * 16 6 5 18 18 H 1.08996 * 109.70502 * 53.52845 * 17 16 6 19 19 C 1.53470 * 109.71021 * 174.11093 * 17 16 6 20 20 O 1.43179 * 108.24480 * 179.42255 * 19 17 16 21 21 C 1.36111 * 116.69595 * 313.77018 * 20 19 17 22 22 C 1.38711 * 119.39288 * 197.25528 * 21 20 19 23 23 C 1.38194 * 120.06470 * 180.10392 * 22 21 20 24 24 C 1.38251 * 120.11174 * 0.06733 * 23 22 21 25 25 C 1.38190 * 120.11905 * 359.88806 * 24 23 22 26 26 C 1.38708 * 120.06286 * 0.02562 * 25 24 23 27 27 O 1.36106 * 119.39638 * 180.32520 * 26 25 24 28 28 H 1.09000 * 109.47366 * 276.36657 * 1 2 3 29 29 H 1.09001 * 109.46747 * 36.36477 * 1 2 3 30 30 H 1.09000 * 109.47380 * 156.36479 * 1 2 3 31 31 H 1.09003 * 109.47016 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47396 * 300.00053 * 3 2 1 33 33 H 1.09001 * 109.46591 * 60.00360 * 3 2 1 34 34 H 1.09001 * 109.47208 * 295.84273 * 4 2 1 35 35 H 1.08999 * 109.46847 * 55.84437 * 4 2 1 36 36 H 1.09003 * 109.46645 * 175.84080 * 4 2 1 37 37 H 1.08993 * 109.46853 * 321.26578 * 5 2 1 38 38 H 1.08997 * 109.46493 * 201.26896 * 5 2 1 39 39 H 1.08993 * 109.47497 * 57.46794 * 7 6 5 40 40 H 1.09004 * 109.47173 * 177.46515 * 7 6 5 41 41 H 0.97004 * 119.99681 * 179.97438 * 11 10 8 42 42 H 1.09009 * 109.47312 * 204.74389 * 16 6 5 43 43 H 1.08999 * 109.47237 * 324.74038 * 16 6 5 44 44 H 1.09008 * 109.70912 * 299.10764 * 19 17 16 45 45 H 1.08996 * 109.71196 * 59.72916 * 19 17 16 46 46 H 1.08005 * 119.96577 * 0.13311 * 22 21 20 47 47 H 1.07994 * 119.94088 * 180.02562 * 23 22 21 48 48 H 1.08008 * 119.93878 * 179.91504 * 24 23 22 49 49 H 1.07995 * 119.97078 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 7 2.0050 -2.1727 1.0252 7 6 0.7196 -2.5851 0.4456 8 6 -0.3918 -2.2708 1.4135 9 1 -0.1754 -1.7457 2.3322 10 6 -1.6850 -2.6533 1.1263 11 7 -1.9483 -3.2929 0.0077 12 14 -3.0627 -2.2630 2.3258 13 1 -3.6454 -0.9375 1.9959 14 1 -4.1157 -3.3053 2.2262 15 1 -2.5223 -2.2359 3.7086 16 6 3.1261 -2.6019 0.1785 17 6 4.3650 -2.8261 1.0479 18 1 4.1243 -3.5105 1.8613 19 6 5.4967 -3.4144 0.1943 20 8 6.6419 -3.5985 1.0337 21 6 6.9736 -2.5622 1.8515 22 6 8.2415 -2.5163 2.4122 23 6 8.5923 -1.4717 3.2462 24 6 7.6805 -0.4706 3.5250 25 6 6.4160 -0.5097 2.9690 26 6 6.0581 -1.5544 2.1297 27 8 4.8113 -1.5760 1.5841 28 1 -0.3634 0.1140 1.0213 29 1 -0.3633 0.8276 -0.6093 30 1 -0.3634 -0.9414 -0.4120 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.7387 -1.7682 -1.2129 35 1 1.6171 -0.2522 -2.1377 36 1 3.1275 -0.6572 -1.2873 37 1 1.4053 -0.4695 2.0987 38 1 3.0639 -0.4102 1.4558 39 1 0.5522 -2.0467 -0.4872 40 1 0.7372 -3.6569 0.2482 41 1 -2.8581 -3.5623 -0.1942 42 1 2.8643 -3.5313 -0.3275 43 1 3.3371 -1.8315 -0.5630 44 1 5.1852 -4.3741 -0.2181 45 1 5.7412 -2.7275 -0.6159 46 1 8.9554 -3.2975 2.1964 47 1 9.5801 -1.4378 3.6813 48 1 7.9572 0.3438 4.1783 49 1 5.7058 0.2738 3.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610091358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:28 Heat of formation + Delta-G solvation = -0.007070 kcal Electronic energy + Delta-G solvation = -28802.981140 eV Core-core repulsion = 25118.749635 eV Total energy + Delta-G solvation = -3684.231505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19950 -39.37227 -37.62235 -37.04870 -33.83036 -32.89997 -31.23881 -30.62015 -28.90415 -27.87527 -27.52552 -25.96281 -25.58786 -24.34900 -23.01314 -22.45435 -20.59740 -20.26422 -18.60234 -18.30062 -17.33110 -16.79980 -16.28814 -15.42630 -15.16817 -15.06760 -14.84488 -14.61605 -14.29496 -14.06678 -14.00843 -13.78800 -13.58451 -13.33784 -12.89310 -12.73447 -12.30466 -11.92112 -11.75331 -11.64707 -11.40463 -11.24820 -11.11607 -10.99991 -10.90302 -10.79067 -10.74105 -10.64872 -10.42006 -10.34413 -10.18585 -9.74341 -9.62283 -9.27825 -9.06911 -8.63186 -8.40359 -7.99241 -6.98116 -6.03084 -3.98629 1.28863 1.34052 3.11708 3.30832 3.34411 3.38220 3.42180 3.74280 4.23996 4.44475 4.65272 4.91647 4.94895 5.02799 5.20499 5.22353 5.28854 5.32334 5.42558 5.45533 5.47396 5.50791 5.64601 5.68046 5.79431 5.96397 6.01384 6.04704 6.12941 6.18395 6.21372 6.25303 6.38300 6.40049 6.43737 6.50528 6.63000 6.65090 6.79798 6.89811 6.96392 7.04288 7.12997 7.30064 7.33216 7.56671 7.77263 7.81698 8.09708 8.24200 8.55841 9.03422 9.60765 11.07564 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003655 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.380009 B = 7658.395536 C = 7887.033367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.163 4.163 5 C 0.077 3.923 6 N -0.528 5.528 7 C 0.162 3.838 8 C -0.489 4.489 9 H 0.060 0.940 10 C 0.056 3.944 11 N -0.900 5.900 12 Si 0.888 3.112 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.023 3.977 17 C 0.061 3.939 18 H 0.088 0.912 19 C 0.026 3.974 20 O -0.310 6.310 21 C 0.045 3.955 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.119 4.119 26 C 0.062 3.938 27 O -0.290 6.290 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.025 0.975 41 H 0.260 0.740 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.397 4.454 0.538 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 C -0.191 4.191 4 C -0.219 4.219 5 C -0.051 4.051 6 N -0.250 5.250 7 C 0.038 3.962 8 C -0.528 4.528 9 H 0.079 0.921 10 C -0.145 4.145 11 N -0.540 5.540 12 Si 0.716 3.284 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.105 4.105 17 C 0.004 3.996 18 H 0.106 0.894 19 C -0.050 4.050 20 O -0.224 6.224 21 C 0.000 4.000 22 C -0.136 4.136 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.137 4.137 26 C 0.016 3.984 27 O -0.205 6.205 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.139 0.861 45 H 0.092 0.908 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 17.214 4.082 0.863 17.712 hybrid contribution -1.101 0.438 -0.190 1.200 sum 16.113 4.520 0.672 16.749 Atomic orbital electron populations 1.22483 0.92664 1.02590 1.02141 1.21116 0.97729 0.94502 0.96288 1.21845 0.99807 0.96621 1.00851 1.22765 0.98760 1.02846 0.97554 1.22241 0.99936 0.87025 0.95934 1.62202 1.03441 1.12958 1.46444 1.20608 0.84038 0.96069 0.95493 1.21033 0.91089 1.35593 1.05062 0.92149 1.24862 0.98564 0.95655 0.95385 1.69930 1.20170 1.40064 1.23840 0.86642 0.82058 0.77911 0.81757 1.20790 1.21411 1.19923 1.22959 0.90235 1.02622 0.94718 1.23460 0.94052 0.84756 0.97378 0.89389 1.23688 0.85030 1.04071 0.92243 1.86276 1.47017 1.37138 1.52017 1.18977 0.94183 0.90386 0.96467 1.20401 0.93341 0.99987 0.99883 1.20826 0.99888 0.94360 0.99427 1.20878 0.92948 0.99298 1.00549 1.20485 0.97588 0.98600 0.97073 1.19110 0.85329 0.96634 0.97282 1.86445 1.27241 1.33941 1.72841 0.92170 0.96444 0.87855 0.93627 0.93639 0.93116 0.89661 0.93827 0.93170 0.91097 0.91527 0.95021 0.95684 0.93039 0.89740 0.90047 0.86112 0.90817 0.85256 0.85514 0.85455 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.06 37.16 0.26 -2.64 16 2 C -0.09 -1.68 0.77 -154.50 -0.12 -1.79 16 3 C -0.13 -2.03 8.25 37.16 0.31 -1.73 16 4 C -0.16 -2.72 6.37 37.16 0.24 -2.48 16 5 C 0.08 1.45 4.64 -3.82 -0.02 1.43 16 6 N -0.53 -10.52 4.61 -236.08 -1.09 -11.61 16 7 C 0.16 3.78 3.61 -4.98 -0.02 3.76 16 8 C -0.49 -12.63 5.54 -34.44 -0.19 -12.82 16 9 H 0.06 1.60 6.72 -52.49 -0.35 1.25 16 10 C 0.06 1.49 5.17 -17.82 -0.09 1.40 16 11 N -0.90 -25.14 13.29 55.43 0.74 -24.40 16 12 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.02 0.38 3.61 -3.83 -0.01 0.36 16 17 C 0.06 0.92 3.26 -26.49 -0.09 0.83 16 18 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 19 C 0.03 0.32 6.56 37.40 0.25 0.57 16 20 O -0.31 -4.42 10.42 -32.88 -0.34 -4.76 16 21 C 0.04 0.64 6.49 -39.14 -0.25 0.38 16 22 C -0.12 -1.40 9.96 -39.42 -0.39 -1.79 16 23 C -0.13 -1.30 10.04 -39.59 -0.40 -1.69 16 24 C -0.12 -1.25 10.04 -39.59 -0.40 -1.65 16 25 C -0.12 -1.53 9.96 -39.43 -0.39 -1.92 16 26 C 0.06 0.92 6.49 -39.14 -0.25 0.67 16 27 O -0.29 -4.66 7.73 -32.86 -0.25 -4.91 16 28 H 0.06 1.30 6.57 -51.93 -0.34 0.96 16 29 H 0.02 0.32 7.91 -51.93 -0.41 -0.09 16 30 H 0.10 2.43 4.20 -51.93 -0.22 2.22 16 31 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.56 3.45 -51.93 -0.18 1.38 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.76 6.33 -51.93 -0.33 0.43 16 37 H 0.07 1.47 6.48 -51.93 -0.34 1.14 16 38 H 0.07 1.20 5.49 -51.93 -0.29 0.91 16 39 H 0.03 0.76 2.57 -51.93 -0.13 0.63 16 40 H 0.03 0.65 7.89 -51.93 -0.41 0.24 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.08 1.32 7.64 -51.92 -0.40 0.93 16 43 H 0.08 1.27 3.43 -51.93 -0.18 1.09 16 44 H 0.12 1.25 8.14 -51.92 -0.42 0.82 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 49 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -28.39 360.92 -9.46 -37.85 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.35 Total: 5.44 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.58 Total: -19.10 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.35 Total: -36.01 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.60 Total: -9.67 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.39 -9.46 -37.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610091358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.841 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds