Wall clock time and date at job start Tue Mar 31 2020 12:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 C 1.53008 * 109.46960 * 240.00021 * 2 1 3 5 5 C 1.53005 * 109.46953 * 120.00566 * 2 1 3 6 6 N 1.46895 * 109.47371 * 81.26901 * 5 2 1 7 7 C 1.46904 * 110.99710 * 313.05330 * 6 5 2 8 8 C 1.50697 * 109.47085 * 297.46169 * 7 6 5 9 9 H 1.08000 * 119.99992 * 4.47620 * 8 7 6 10 10 C 1.37883 * 120.00222 * 184.46672 * 8 7 6 11 11 N 1.31515 * 119.99536 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00027 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46624 * 90.00529 * 12 10 8 14 14 H 1.48496 * 109.46908 * 210.00192 * 12 10 8 15 15 H 1.48495 * 109.47502 * 330.00264 * 12 10 8 16 16 C 1.46897 * 111.00135 * 77.00570 * 6 5 2 17 17 C 1.52998 * 109.47083 * 84.74299 * 16 6 5 18 18 H 1.08996 * 109.70502 * 53.52845 * 17 16 6 19 19 C 1.53470 * 109.71021 * 174.11093 * 17 16 6 20 20 O 1.43179 * 108.24480 * 179.42255 * 19 17 16 21 21 C 1.36111 * 116.69595 * 313.77018 * 20 19 17 22 22 C 1.38711 * 119.39288 * 197.25528 * 21 20 19 23 23 C 1.38194 * 120.06470 * 180.10392 * 22 21 20 24 24 C 1.38251 * 120.11174 * 0.06733 * 23 22 21 25 25 C 1.38190 * 120.11905 * 359.88806 * 24 23 22 26 26 C 1.38708 * 120.06286 * 0.02562 * 25 24 23 27 27 O 1.36106 * 119.39638 * 180.32520 * 26 25 24 28 28 H 1.09000 * 109.47366 * 276.36657 * 1 2 3 29 29 H 1.09001 * 109.46747 * 36.36477 * 1 2 3 30 30 H 1.09000 * 109.47380 * 156.36479 * 1 2 3 31 31 H 1.09003 * 109.47016 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47396 * 300.00053 * 3 2 1 33 33 H 1.09001 * 109.46591 * 60.00360 * 3 2 1 34 34 H 1.09001 * 109.47208 * 295.84273 * 4 2 1 35 35 H 1.08999 * 109.46847 * 55.84437 * 4 2 1 36 36 H 1.09003 * 109.46645 * 175.84080 * 4 2 1 37 37 H 1.08993 * 109.46853 * 321.26578 * 5 2 1 38 38 H 1.08997 * 109.46493 * 201.26896 * 5 2 1 39 39 H 1.08993 * 109.47497 * 57.46794 * 7 6 5 40 40 H 1.09004 * 109.47173 * 177.46515 * 7 6 5 41 41 H 0.97004 * 119.99681 * 179.97438 * 11 10 8 42 42 H 1.09009 * 109.47312 * 204.74389 * 16 6 5 43 43 H 1.08999 * 109.47237 * 324.74038 * 16 6 5 44 44 H 1.09008 * 109.70912 * 299.10764 * 19 17 16 45 45 H 1.08996 * 109.71196 * 59.72916 * 19 17 16 46 46 H 1.08005 * 119.96577 * 0.13311 * 22 21 20 47 47 H 1.07994 * 119.94088 * 180.02562 * 23 22 21 48 48 H 1.08008 * 119.93878 * 179.91504 * 24 23 22 49 49 H 1.07995 * 119.97078 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2492 6 7 2.0050 -2.1727 1.0252 7 6 0.7196 -2.5851 0.4456 8 6 -0.3918 -2.2708 1.4135 9 1 -0.1754 -1.7457 2.3322 10 6 -1.6850 -2.6533 1.1263 11 7 -1.9483 -3.2929 0.0077 12 14 -3.0627 -2.2630 2.3258 13 1 -3.6454 -0.9375 1.9959 14 1 -4.1157 -3.3053 2.2262 15 1 -2.5223 -2.2359 3.7086 16 6 3.1261 -2.6019 0.1785 17 6 4.3650 -2.8261 1.0479 18 1 4.1243 -3.5105 1.8613 19 6 5.4967 -3.4144 0.1943 20 8 6.6419 -3.5985 1.0337 21 6 6.9736 -2.5622 1.8515 22 6 8.2415 -2.5163 2.4122 23 6 8.5923 -1.4717 3.2462 24 6 7.6805 -0.4706 3.5250 25 6 6.4160 -0.5097 2.9690 26 6 6.0581 -1.5544 2.1297 27 8 4.8113 -1.5760 1.5841 28 1 -0.3634 0.1140 1.0213 29 1 -0.3633 0.8276 -0.6093 30 1 -0.3634 -0.9414 -0.4120 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.7387 -1.7682 -1.2129 35 1 1.6171 -0.2522 -2.1377 36 1 3.1275 -0.6572 -1.2873 37 1 1.4053 -0.4695 2.0987 38 1 3.0639 -0.4102 1.4558 39 1 0.5522 -2.0467 -0.4872 40 1 0.7372 -3.6569 0.2482 41 1 -2.8581 -3.5623 -0.1942 42 1 2.8643 -3.5313 -0.3275 43 1 3.3371 -1.8315 -0.5630 44 1 5.1852 -4.3741 -0.2181 45 1 5.7412 -2.7275 -0.6159 46 1 8.9554 -3.2975 2.1964 47 1 9.5801 -1.4378 3.6813 48 1 7.9572 0.3438 4.1783 49 1 5.7058 0.2738 3.1881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610091358.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:27 Heat of formation + Delta-G solvation = -15.962613 kcal Electronic energy + Delta-G solvation = -28803.673025 eV Core-core repulsion = 25118.749635 eV Total energy + Delta-G solvation = -3684.923389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26328 -40.84805 -38.58024 -38.13896 -35.28818 -34.79771 -32.55651 -31.54633 -30.10665 -29.50462 -28.85662 -27.44193 -26.90666 -25.93982 -24.24843 -23.56591 -22.05162 -21.44711 -19.82973 -19.63219 -18.38153 -18.32624 -17.73528 -16.87642 -16.61911 -16.30547 -16.16559 -15.74179 -15.67727 -15.45725 -15.20999 -14.93096 -14.78607 -14.61485 -14.34152 -14.01790 -13.75313 -13.18875 -13.01027 -12.94992 -12.85371 -12.70966 -12.55778 -12.49166 -12.37749 -12.32397 -12.17262 -12.04332 -11.89915 -11.76490 -11.64176 -11.31939 -11.17086 -10.96470 -10.81243 -10.46401 -9.56794 -8.98711 -8.59010 -8.09924 -6.10035 0.37008 0.40940 1.39218 1.41753 1.50360 2.09876 2.31634 2.44458 2.82005 3.09133 3.24008 3.54768 3.80571 3.91656 3.94391 4.04978 4.07264 4.19154 4.22248 4.29650 4.34577 4.45907 4.50834 4.54069 4.64233 4.71281 4.74626 4.78034 4.89742 4.94649 4.98195 5.05688 5.14959 5.19602 5.20089 5.22748 5.28268 5.31340 5.44617 5.47503 5.53332 5.56969 5.65336 5.77272 5.79914 6.00306 6.02707 6.21234 6.49877 6.53560 6.78617 6.99040 7.52473 8.99981 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.003655 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.380009 B = 7658.395536 C = 7887.033367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 C -0.126 4.126 4 C -0.157 4.157 5 C 0.085 3.915 6 N -0.543 5.543 7 C 0.177 3.823 8 C -0.488 4.488 9 H 0.048 0.952 10 C 0.013 3.987 11 N -0.929 5.929 12 Si 0.940 3.060 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.028 3.972 17 C 0.066 3.934 18 H 0.063 0.937 19 C 0.031 3.969 20 O -0.321 6.321 21 C 0.021 3.979 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.132 4.132 26 C 0.031 3.969 27 O -0.308 6.308 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.036 0.964 40 H -0.007 1.007 41 H 0.260 0.740 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.146 0.854 47 H 0.163 0.837 48 H 0.159 0.841 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.845 5.843 0.818 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 C -0.184 4.184 4 C -0.213 4.213 5 C -0.044 4.044 6 N -0.265 5.265 7 C 0.052 3.948 8 C -0.527 4.527 9 H 0.066 0.934 10 C -0.184 4.184 11 N -0.570 5.570 12 Si 0.767 3.233 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.099 4.099 17 C 0.009 3.991 18 H 0.081 0.919 19 C -0.045 4.045 20 O -0.236 6.236 21 C -0.023 4.023 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.131 4.131 25 C -0.150 4.150 26 C -0.014 4.014 27 O -0.223 6.223 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.011 0.989 41 H 0.069 0.931 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.159 0.841 45 H 0.104 0.896 46 H 0.164 0.836 47 H 0.181 0.819 48 H 0.177 0.823 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.682 5.480 1.154 20.463 hybrid contribution -1.743 0.042 -0.196 1.755 sum 17.938 5.522 0.958 18.793 Atomic orbital electron populations 1.22303 0.94806 1.01246 1.00667 1.21081 0.95804 0.96474 0.96150 1.21765 1.00653 0.94453 1.01551 1.22651 1.00072 1.01407 0.97172 1.22139 1.00023 0.86492 0.95708 1.62038 1.03053 1.13926 1.47504 1.20320 0.85256 0.94008 0.95244 1.21206 0.92055 1.34635 1.04779 0.93387 1.25462 1.00501 0.95800 0.96658 1.70024 1.20443 1.41322 1.25253 0.85821 0.79718 0.77833 0.79941 1.20174 1.21263 1.19908 1.22951 0.89270 1.02976 0.94731 1.23224 0.94497 0.84532 0.96824 0.91851 1.23746 0.83707 1.05305 0.91710 1.86248 1.47269 1.37629 1.52407 1.19308 0.95168 0.90493 0.97362 1.20771 0.92767 1.00987 0.99725 1.21289 1.01220 0.93045 0.97916 1.21289 0.91835 1.00080 0.99888 1.20746 0.98862 0.98300 0.97137 1.19421 0.85029 0.98050 0.98872 1.86361 1.28390 1.33979 1.73577 0.94244 0.95076 0.91134 0.92191 0.92451 0.92963 0.91631 0.92992 0.91048 0.93727 0.90287 0.94735 0.98863 0.93148 0.89528 0.88785 0.84051 0.89620 0.83646 0.81950 0.82321 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 7.06 71.98 0.51 -4.98 16 2 C -0.09 -3.25 0.77 -52.18 -0.04 -3.29 16 3 C -0.13 -3.58 8.25 71.98 0.59 -2.99 16 4 C -0.16 -5.05 6.37 71.98 0.46 -4.59 16 5 C 0.08 3.22 4.64 86.31 0.40 3.62 16 6 N -0.54 -22.24 4.61 -900.81 -4.15 -26.39 16 7 C 0.18 8.58 3.61 85.56 0.31 8.89 16 8 C -0.49 -26.10 5.54 25.60 0.14 -25.96 16 9 H 0.05 2.64 6.72 -2.91 -0.02 2.62 16 10 C 0.01 0.73 5.17 84.66 0.44 1.17 16 11 N -0.93 -53.30 13.29 21.45 0.28 -53.02 16 12 Si 0.94 44.07 29.54 68.60 2.03 46.10 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 16 C 0.03 0.93 3.61 86.30 0.31 1.24 16 17 C 0.07 2.03 3.26 30.75 0.10 2.13 16 18 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.03 0.76 6.56 72.14 0.47 1.23 16 20 O -0.32 -8.90 10.42 -82.59 -0.86 -9.76 16 21 C 0.02 0.59 6.49 22.56 0.15 0.73 16 22 C -0.12 -2.67 9.96 22.37 0.22 -2.45 16 23 C -0.12 -1.98 10.04 22.26 0.22 -1.76 16 24 C -0.11 -2.05 10.04 22.26 0.22 -1.82 16 25 C -0.13 -3.21 9.96 22.37 0.22 -2.98 16 26 C 0.03 0.91 6.49 22.56 0.15 1.06 16 27 O -0.31 -9.86 7.73 -82.53 -0.64 -10.50 16 28 H 0.04 1.74 6.57 -2.39 -0.02 1.72 16 29 H 0.03 1.15 7.91 -2.39 -0.02 1.13 16 30 H 0.07 3.40 4.20 -2.39 -0.01 3.39 16 31 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 32 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 2.39 3.45 -2.39 -0.01 2.38 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.99 6.33 -2.39 -0.02 1.98 16 37 H 0.04 1.91 6.48 -2.39 -0.02 1.89 16 38 H 0.08 2.82 5.49 -2.39 -0.01 2.81 16 39 H 0.04 1.72 2.57 -2.39 -0.01 1.71 16 40 H -0.01 -0.37 7.89 -2.38 -0.02 -0.38 16 41 H 0.26 14.31 8.31 -92.71 -0.77 13.53 16 42 H 0.09 2.77 7.64 -2.38 -0.02 2.75 16 43 H 0.09 2.83 3.43 -2.39 -0.01 2.83 16 44 H 0.14 2.76 8.14 -2.38 -0.02 2.74 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 47 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 48 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 49 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -63.22 360.92 2.49 -60.72 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.95 Total: 23.60 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 4.88 Total: -30.75 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -3.87 Total: -79.40 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.50 Total: -20.26 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -63.22 2.49 -60.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610091358.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.760 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds