Wall clock time and date at job start Tue Mar 31 2020 12:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52998 * 109.46939 * 188.91794 * 3 2 1 5 5 C 1.52995 * 109.47305 * 68.91916 * 3 2 1 6 6 N 1.46505 * 109.47143 * 308.91461 * 3 2 1 7 7 C 1.46495 * 119.99643 * 132.33226 * 6 3 2 8 8 C 1.50697 * 109.47409 * 274.33982 * 7 6 3 9 9 H 1.07999 * 119.99893 * 4.73240 * 8 7 6 10 10 C 1.37874 * 120.00044 * 184.73665 * 8 7 6 11 11 N 1.31511 * 120.00286 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99915 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46822 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47008 * 119.99508 * 12 10 8 15 15 H 1.48497 * 109.47037 * 239.99646 * 12 10 8 16 16 C 1.34777 * 119.99891 * 312.33547 * 6 3 2 17 17 O 1.21275 * 119.99587 * 179.06595 * 16 6 3 18 18 C 1.50703 * 120.00073 * 359.06769 * 16 6 3 19 19 O 1.42901 * 109.46902 * 191.39930 * 18 16 6 20 20 C 1.35899 * 117.00027 * 184.85053 * 19 18 16 21 21 C 1.38754 * 120.05483 * 354.58177 * 20 19 18 22 22 C 1.38123 * 119.94470 * 180.02562 * 21 20 19 23 23 C 1.38283 * 120.05739 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.10736 * 0.02562 * 23 22 21 25 25 C 1.38159 * 120.05932 * 359.97438 * 24 23 22 26 26 C 1.50698 * 120.03249 * 179.97438 * 25 24 23 27 27 H 1.09003 * 109.47345 * 184.70876 * 1 2 3 28 28 H 1.09002 * 109.46919 * 304.70962 * 1 2 3 29 29 H 1.08994 * 109.47131 * 64.70966 * 1 2 3 30 30 H 1.09001 * 109.46953 * 239.99915 * 2 1 3 31 31 H 1.09001 * 109.46854 * 120.00256 * 2 1 3 32 32 H 1.08996 * 109.47281 * 185.54101 * 4 3 2 33 33 H 1.09002 * 109.47372 * 305.53719 * 4 3 2 34 34 H 1.09000 * 109.47606 * 65.53942 * 4 3 2 35 35 H 1.09006 * 109.46838 * 303.00790 * 5 3 2 36 36 H 1.08997 * 109.47437 * 63.00706 * 5 3 2 37 37 H 1.08995 * 109.47030 * 183.01216 * 5 3 2 38 38 H 1.08998 * 109.47022 * 34.34144 * 7 6 3 39 39 H 1.09001 * 109.46914 * 154.33777 * 7 6 3 40 40 H 0.97004 * 120.00491 * 180.02562 * 11 10 8 41 41 H 1.08994 * 109.47057 * 71.40125 * 18 16 6 42 42 H 1.08997 * 109.47120 * 311.40112 * 18 16 6 43 43 H 1.07999 * 120.02923 * 359.97438 * 21 20 19 44 44 H 1.08001 * 119.96846 * 179.71898 * 22 21 20 45 45 H 1.07997 * 119.94874 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.96572 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.46850 * 270.02632 * 26 25 24 48 48 H 1.08999 * 109.47033 * 30.02222 * 26 25 24 49 49 H 1.08995 * 109.47437 * 150.02455 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5536 1.4482 -0.2236 5 6 1.7209 2.0963 1.3459 6 7 1.3848 2.1921 -1.0747 7 6 0.8064 3.5100 -0.8013 8 6 -0.5967 3.3439 -0.2771 9 1 -0.9887 2.3556 -0.0872 10 6 -1.3800 4.4535 -0.0403 11 7 -0.9026 5.6569 -0.2712 12 14 -3.1196 4.2475 0.6088 13 1 -3.4145 2.8027 0.7843 14 1 -3.2454 4.9402 1.9163 15 1 -4.0814 4.8357 -0.3577 16 6 1.3141 1.6693 -2.3149 17 8 0.7568 2.2824 -3.2006 18 6 1.9275 0.3228 -2.6011 19 8 1.9612 0.1052 -4.0131 20 6 2.3939 -1.1104 -4.4398 21 6 2.8838 -2.0334 -3.5270 22 6 3.3235 -3.2679 -3.9633 23 6 3.2751 -3.5846 -5.3085 24 6 2.7874 -2.6667 -6.2200 25 6 2.3464 -1.4305 -5.7887 26 6 1.8154 -0.4301 -6.7828 27 1 -0.3634 -1.0242 0.0844 28 1 -0.3633 0.5852 0.8448 29 1 -0.3633 0.4390 -0.9291 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9314 2.4659 -0.1258 33 1 4.0330 0.8099 0.5186 34 1 3.7747 1.0730 -1.2228 35 1 0.6477 2.0443 1.5296 36 1 2.2513 1.5708 2.1400 37 1 2.0361 3.1395 1.3269 38 1 1.4134 4.0259 -0.0573 39 1 0.7839 4.0948 -1.7208 40 1 -1.4535 6.4376 -0.1042 41 1 1.3305 -0.4565 -2.1276 42 1 2.9425 0.2943 -2.2048 43 1 2.9222 -1.7864 -2.4763 44 1 3.7091 -3.9849 -3.2537 45 1 3.6197 -4.5503 -5.6478 46 1 2.7510 -2.9163 -7.2701 47 1 2.6342 0.1913 -7.1456 48 1 1.3605 -0.9575 -7.6213 49 1 1.0675 0.1994 -6.3007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615926604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:18 Heat of formation + Delta-G solvation = -29.307254 kcal Electronic energy + Delta-G solvation = -28546.172694 eV Core-core repulsion = 24860.670637 eV Total energy + Delta-G solvation = -3685.502057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65755 -39.60499 -37.37866 -36.60468 -33.35821 -32.81368 -31.75139 -30.53038 -30.16168 -29.36199 -26.96570 -26.49313 -26.25885 -23.29497 -22.95839 -22.13990 -21.52355 -20.58062 -18.43419 -17.77807 -16.59879 -16.38096 -16.25127 -15.75534 -15.42039 -15.02233 -14.60119 -14.50699 -14.25982 -14.12057 -13.76729 -13.36706 -13.15665 -13.08193 -12.78194 -12.58233 -12.28564 -12.24316 -12.13180 -12.02029 -11.83318 -11.52558 -11.44117 -11.36317 -11.10467 -11.00272 -10.95905 -10.80913 -10.55683 -10.43951 -10.42421 -10.07927 -9.94731 -9.50747 -8.94980 -8.89718 -8.42536 -8.10718 -7.67806 -6.04149 -4.07791 1.24681 1.39592 2.96693 3.27372 3.28908 3.37370 3.40344 3.69631 4.03662 4.43698 4.68625 4.69215 4.84255 4.89736 4.98733 5.01276 5.13630 5.18515 5.22323 5.30284 5.33528 5.38226 5.53841 5.56063 5.64804 5.77057 5.77808 5.78743 5.83422 5.92711 6.04409 6.12405 6.20565 6.24952 6.26426 6.28678 6.34166 6.41391 6.48736 6.53188 6.68952 6.73558 6.96768 7.07530 7.42572 7.46699 7.56099 7.92814 8.23441 8.36571 8.89456 9.04218 9.56649 11.04080 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003776 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.003246 B = 7413.049664 C = 8074.554625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.157 4.157 3 C 0.162 3.838 4 C -0.168 4.168 5 C -0.146 4.146 6 N -0.580 5.580 7 C 0.244 3.756 8 C -0.523 4.523 9 H 0.066 0.934 10 C 0.062 3.938 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.512 3.488 17 O -0.520 6.520 18 C 0.019 3.981 19 O -0.288 6.288 20 C 0.134 3.866 21 C -0.210 4.210 22 C -0.086 4.086 23 C -0.161 4.161 24 C -0.085 4.085 25 C -0.115 4.115 26 C -0.108 4.108 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.458 -17.085 -3.008 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.194 4.194 3 C 0.076 3.924 4 C -0.226 4.226 5 C -0.203 4.203 6 N -0.314 5.314 7 C 0.126 3.874 8 C -0.562 4.562 9 H 0.084 0.916 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.296 3.704 17 O -0.395 6.395 18 C -0.058 4.058 19 O -0.200 6.200 20 C 0.088 3.912 21 C -0.228 4.228 22 C -0.105 4.105 23 C -0.180 4.180 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.144 0.856 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.028 -16.341 -3.570 19.502 hybrid contribution -0.860 -0.208 0.752 1.161 sum 9.168 -16.549 -2.818 19.128 Atomic orbital electron populations 1.21904 0.94540 1.00574 1.04145 1.22571 0.97893 0.96332 1.02643 1.20410 0.91057 0.91313 0.89619 1.22470 0.95870 1.02877 1.01371 1.22082 1.04142 1.00926 0.93157 1.48285 1.55749 1.20903 1.06459 1.19367 0.92964 0.77259 0.97806 1.21561 0.98263 0.93208 1.43194 0.91589 1.24923 0.98177 0.95169 0.95744 1.69940 1.36991 0.97682 1.48600 0.86536 0.84875 0.78167 0.78405 1.19794 1.21080 1.20981 1.19608 0.81140 0.86020 0.83598 1.90713 1.42835 1.61203 1.44761 1.23940 1.02552 0.99064 0.80269 1.86171 1.80333 1.29740 1.23801 1.18966 0.94150 0.84947 0.93118 1.21279 1.06381 0.95671 0.99513 1.20886 0.98059 0.95657 0.95849 1.20990 1.03699 0.99943 0.93327 1.20869 0.97530 0.92308 0.99601 1.19326 1.03937 0.96578 0.91779 1.20644 1.01409 0.97519 0.96936 0.93648 0.91092 0.91883 0.90933 0.90930 0.91672 0.91696 0.92619 0.89793 0.93078 0.91271 0.94718 0.93537 0.92851 0.87927 0.89122 0.85587 0.85991 0.86156 0.85587 0.91397 0.91904 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.00 37.16 0.30 -2.10 16 2 C -0.16 -2.07 4.29 -26.73 -0.11 -2.18 16 3 C 0.16 2.50 0.70 -131.82 -0.09 2.41 16 4 C -0.17 -2.15 8.50 37.16 0.32 -1.83 16 5 C -0.15 -2.32 7.30 37.15 0.27 -2.05 16 6 N -0.58 -11.72 1.75 -160.19 -0.28 -12.00 16 7 C 0.24 6.09 4.61 -5.20 -0.02 6.07 16 8 C -0.52 -13.88 7.92 -34.44 -0.27 -14.15 16 9 H 0.07 1.70 5.48 -52.49 -0.29 1.42 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 12 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.51 10.78 6.03 -10.98 -0.07 10.71 16 17 O -0.52 -13.55 16.06 -14.09 -0.23 -13.77 16 18 C 0.02 0.31 2.92 36.01 0.11 0.41 16 19 O -0.29 -5.03 8.74 -39.07 -0.34 -5.37 16 20 C 0.13 1.97 6.65 -39.22 -0.26 1.71 16 21 C -0.21 -2.55 9.03 -39.43 -0.36 -2.91 16 22 C -0.09 -0.89 10.04 -39.61 -0.40 -1.29 16 23 C -0.16 -1.61 10.04 -39.56 -0.40 -2.01 16 24 C -0.09 -0.92 9.70 -39.61 -0.38 -1.31 16 25 C -0.12 -1.54 5.89 -104.48 -0.62 -2.15 16 26 C -0.11 -1.37 9.79 36.00 0.35 -1.01 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.19 5.75 -51.93 -0.30 0.89 16 29 H 0.06 1.18 5.90 -51.93 -0.31 0.87 16 30 H 0.07 0.87 3.39 -51.93 -0.18 0.69 16 31 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.69 5.06 -51.93 -0.26 0.43 16 35 H 0.08 1.52 5.29 -51.93 -0.27 1.24 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.21 6.36 -51.93 -0.33 0.88 16 38 H 0.04 0.87 6.15 -51.93 -0.32 0.55 16 39 H 0.05 1.36 7.31 -51.93 -0.38 0.98 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.10 1.49 4.53 -51.93 -0.24 1.26 16 42 H 0.09 1.24 4.08 -51.93 -0.21 1.03 16 43 H 0.13 1.33 6.04 -52.49 -0.32 1.02 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 49 H 0.08 1.16 7.53 -51.93 -0.39 0.77 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -32.28 369.84 -8.44 -40.72 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -7.15 Total: 3.82 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -1.74 Total: -10.07 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.46 Total: -37.23 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.57 Total: -19.15 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.28 -8.44 -40.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615926604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.416 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds