Wall clock time and date at job start Tue Mar 31 2020 12:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 C 1.52998 * 109.46939 * 188.91794 * 3 2 1 5 5 C 1.52995 * 109.47305 * 68.91916 * 3 2 1 6 6 N 1.46505 * 109.47143 * 308.91461 * 3 2 1 7 7 C 1.46495 * 119.99643 * 132.33226 * 6 3 2 8 8 C 1.50697 * 109.47409 * 274.33982 * 7 6 3 9 9 H 1.07999 * 119.99893 * 4.73240 * 8 7 6 10 10 C 1.37874 * 120.00044 * 184.73665 * 8 7 6 11 11 N 1.31511 * 120.00286 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99915 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46822 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47008 * 119.99508 * 12 10 8 15 15 H 1.48497 * 109.47037 * 239.99646 * 12 10 8 16 16 C 1.34777 * 119.99891 * 312.33547 * 6 3 2 17 17 O 1.21275 * 119.99587 * 179.06595 * 16 6 3 18 18 C 1.50703 * 120.00073 * 359.06769 * 16 6 3 19 19 O 1.42901 * 109.46902 * 191.39930 * 18 16 6 20 20 C 1.35899 * 117.00027 * 184.85053 * 19 18 16 21 21 C 1.38754 * 120.05483 * 354.58177 * 20 19 18 22 22 C 1.38123 * 119.94470 * 180.02562 * 21 20 19 23 23 C 1.38283 * 120.05739 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.10736 * 0.02562 * 23 22 21 25 25 C 1.38159 * 120.05932 * 359.97438 * 24 23 22 26 26 C 1.50698 * 120.03249 * 179.97438 * 25 24 23 27 27 H 1.09003 * 109.47345 * 184.70876 * 1 2 3 28 28 H 1.09002 * 109.46919 * 304.70962 * 1 2 3 29 29 H 1.08994 * 109.47131 * 64.70966 * 1 2 3 30 30 H 1.09001 * 109.46953 * 239.99915 * 2 1 3 31 31 H 1.09001 * 109.46854 * 120.00256 * 2 1 3 32 32 H 1.08996 * 109.47281 * 185.54101 * 4 3 2 33 33 H 1.09002 * 109.47372 * 305.53719 * 4 3 2 34 34 H 1.09000 * 109.47606 * 65.53942 * 4 3 2 35 35 H 1.09006 * 109.46838 * 303.00790 * 5 3 2 36 36 H 1.08997 * 109.47437 * 63.00706 * 5 3 2 37 37 H 1.08995 * 109.47030 * 183.01216 * 5 3 2 38 38 H 1.08998 * 109.47022 * 34.34144 * 7 6 3 39 39 H 1.09001 * 109.46914 * 154.33777 * 7 6 3 40 40 H 0.97004 * 120.00491 * 180.02562 * 11 10 8 41 41 H 1.08994 * 109.47057 * 71.40125 * 18 16 6 42 42 H 1.08997 * 109.47120 * 311.40112 * 18 16 6 43 43 H 1.07999 * 120.02923 * 359.97438 * 21 20 19 44 44 H 1.08001 * 119.96846 * 179.71898 * 22 21 20 45 45 H 1.07997 * 119.94874 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.96572 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.46850 * 270.02632 * 26 25 24 48 48 H 1.08999 * 109.47033 * 30.02222 * 26 25 24 49 49 H 1.08995 * 109.47437 * 150.02455 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5536 1.4482 -0.2236 5 6 1.7209 2.0963 1.3459 6 7 1.3848 2.1921 -1.0747 7 6 0.8064 3.5100 -0.8013 8 6 -0.5967 3.3439 -0.2771 9 1 -0.9887 2.3556 -0.0872 10 6 -1.3800 4.4535 -0.0403 11 7 -0.9026 5.6569 -0.2712 12 14 -3.1196 4.2475 0.6088 13 1 -3.4145 2.8027 0.7843 14 1 -3.2454 4.9402 1.9163 15 1 -4.0814 4.8357 -0.3577 16 6 1.3141 1.6693 -2.3149 17 8 0.7568 2.2824 -3.2006 18 6 1.9275 0.3228 -2.6011 19 8 1.9612 0.1052 -4.0131 20 6 2.3939 -1.1104 -4.4398 21 6 2.8838 -2.0334 -3.5270 22 6 3.3235 -3.2679 -3.9633 23 6 3.2751 -3.5846 -5.3085 24 6 2.7874 -2.6667 -6.2200 25 6 2.3464 -1.4305 -5.7887 26 6 1.8154 -0.4301 -6.7828 27 1 -0.3634 -1.0242 0.0844 28 1 -0.3633 0.5852 0.8448 29 1 -0.3633 0.4390 -0.9291 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9314 2.4659 -0.1258 33 1 4.0330 0.8099 0.5186 34 1 3.7747 1.0730 -1.2228 35 1 0.6477 2.0443 1.5296 36 1 2.2513 1.5708 2.1400 37 1 2.0361 3.1395 1.3269 38 1 1.4134 4.0259 -0.0573 39 1 0.7839 4.0948 -1.7208 40 1 -1.4535 6.4376 -0.1042 41 1 1.3305 -0.4565 -2.1276 42 1 2.9425 0.2943 -2.2048 43 1 2.9222 -1.7864 -2.4763 44 1 3.7091 -3.9849 -3.2537 45 1 3.6197 -4.5503 -5.6478 46 1 2.7510 -2.9163 -7.2701 47 1 2.6342 0.1913 -7.1456 48 1 1.3605 -0.9575 -7.6213 49 1 1.0675 0.1994 -6.3007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615926604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:18 Heat of formation + Delta-G solvation = -47.292708 kcal Electronic energy + Delta-G solvation = -28546.952601 eV Core-core repulsion = 24860.670637 eV Total energy + Delta-G solvation = -3686.281964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96306 -40.78077 -38.56836 -38.06913 -35.28655 -33.77362 -33.42609 -31.81426 -31.24480 -30.65946 -28.45372 -27.74524 -27.43967 -24.89688 -24.37209 -23.29448 -22.44731 -21.94959 -19.73565 -19.09335 -18.55868 -17.61856 -17.52726 -17.10392 -16.53464 -16.47417 -16.04995 -15.88070 -15.67651 -15.24347 -14.98134 -14.62075 -14.41255 -14.17299 -14.07957 -13.98357 -13.74780 -13.60286 -13.20593 -13.18514 -13.14229 -12.93784 -12.88980 -12.63690 -12.58498 -12.35171 -12.21726 -12.11736 -12.04305 -11.82530 -11.76859 -11.65150 -11.38415 -11.15073 -10.67038 -10.59536 -9.73967 -9.42189 -9.06375 -8.17642 -6.28670 0.41042 0.51146 1.34894 1.38054 1.48142 1.61166 1.74273 2.38877 2.68101 2.84719 3.12855 3.42996 3.61618 3.82083 3.89025 3.93805 3.96847 4.02296 4.17510 4.24006 4.39440 4.44588 4.46213 4.61572 4.67130 4.74452 4.76699 4.77869 4.79223 4.86427 4.93775 5.00194 5.02283 5.11618 5.11975 5.15680 5.25549 5.31857 5.41365 5.44466 5.45250 5.55126 5.63251 5.66452 5.68955 5.86157 5.92998 6.12499 6.42128 6.72527 6.82241 7.29511 7.44642 8.90369 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003776 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.003246 B = 7413.049664 C = 8074.554625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.149 3.851 4 C -0.163 4.163 5 C -0.142 4.142 6 N -0.578 5.578 7 C 0.261 3.739 8 C -0.523 4.523 9 H 0.071 0.929 10 C 0.005 3.995 11 N -0.932 5.932 12 Si 0.957 3.043 13 H -0.263 1.263 14 H -0.272 1.272 15 H -0.289 1.289 16 C 0.500 3.500 17 O -0.588 6.588 18 C 0.037 3.963 19 O -0.324 6.324 20 C 0.097 3.903 21 C -0.213 4.213 22 C -0.085 4.085 23 C -0.155 4.155 24 C -0.086 4.086 25 C -0.140 4.140 26 C -0.105 4.105 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.030 0.970 39 H -0.009 1.009 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.067 0.933 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -21.778 -1.552 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.065 3.935 4 C -0.220 4.220 5 C -0.199 4.199 6 N -0.311 5.311 7 C 0.140 3.860 8 C -0.562 4.562 9 H 0.089 0.911 10 C -0.193 4.193 11 N -0.573 5.573 12 Si 0.783 3.217 13 H -0.187 1.187 14 H -0.197 1.197 15 H -0.216 1.216 16 C 0.288 3.712 17 O -0.469 6.469 18 C -0.039 4.039 19 O -0.238 6.238 20 C 0.052 3.948 21 C -0.232 4.232 22 C -0.103 4.103 23 C -0.173 4.173 24 C -0.104 4.104 25 C -0.141 4.141 26 C -0.162 4.162 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.009 0.991 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.161 0.839 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.168 0.832 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.728 -21.085 -2.073 24.216 hybrid contribution -1.313 1.174 0.257 1.780 sum 10.415 -19.912 -1.816 22.544 Atomic orbital electron populations 1.21861 0.96582 1.01547 1.01120 1.22572 0.95925 0.94638 1.05486 1.20905 0.92763 0.92230 0.87561 1.22434 0.93386 1.03188 1.03019 1.22036 1.02906 1.00101 0.94890 1.48284 1.55244 1.19604 1.07924 1.18799 0.93067 0.79485 0.94599 1.21840 0.98908 0.93321 1.42117 0.91130 1.25796 1.02309 0.94919 0.96249 1.70076 1.38585 0.98494 1.50122 0.85513 0.79677 0.78588 0.77944 1.18693 1.19735 1.21567 1.20573 0.80246 0.87567 0.82829 1.90668 1.45925 1.63469 1.46807 1.23804 1.03739 0.95612 0.80764 1.86124 1.81616 1.31971 1.24042 1.19330 0.96432 0.84720 0.94311 1.21527 1.05891 0.95853 0.99903 1.21322 0.96856 0.95311 0.96781 1.21450 1.01948 1.00798 0.93138 1.21188 0.96708 0.91244 1.01253 1.19589 1.05125 0.97776 0.91585 1.20592 1.00590 0.97491 0.97542 0.90816 0.92797 0.96046 0.89236 0.86644 0.93095 0.87358 0.92190 0.92390 0.88717 0.93935 0.95215 0.99115 0.92829 0.85995 0.86102 0.83934 0.82688 0.82951 0.83208 0.91418 0.89580 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.00 71.98 0.58 -3.97 16 2 C -0.15 -3.40 4.29 30.59 0.13 -3.27 16 3 C 0.15 4.39 0.70 3.60 0.00 4.40 16 4 C -0.16 -3.69 8.50 71.98 0.61 -3.08 16 5 C -0.14 -4.37 7.30 71.98 0.53 -3.84 16 6 N -0.58 -24.31 1.75 -779.11 -1.36 -25.68 16 7 C 0.26 13.98 4.61 85.63 0.39 14.37 16 8 C -0.52 -29.15 7.92 25.60 0.20 -28.95 16 9 H 0.07 3.79 5.48 -2.91 -0.02 3.78 16 10 C 0.01 0.31 5.46 84.65 0.46 0.77 16 11 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 12 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 13 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 16 C 0.50 22.18 6.03 87.66 0.53 22.71 16 17 O -0.59 -33.39 16.06 15.77 0.25 -33.14 16 18 C 0.04 1.19 2.92 71.24 0.21 1.40 16 19 O -0.32 -11.68 8.74 -73.63 -0.64 -12.32 16 20 C 0.10 2.78 6.65 22.51 0.15 2.93 16 21 C -0.21 -4.54 9.03 22.37 0.20 -4.34 16 22 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 23 C -0.16 -2.43 10.04 22.28 0.22 -2.21 16 24 C -0.09 -1.64 9.70 22.25 0.22 -1.42 16 25 C -0.14 -3.66 5.89 -19.77 -0.12 -3.77 16 26 C -0.11 -2.77 9.79 71.24 0.70 -2.08 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.05 1.76 5.75 -2.39 -0.01 1.75 16 29 H 0.02 0.79 5.90 -2.39 -0.01 0.77 16 30 H 0.09 1.76 3.39 -2.39 -0.01 1.75 16 31 H 0.12 1.77 8.12 -2.39 -0.02 1.75 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.31 5.06 -2.39 -0.01 1.30 16 35 H 0.06 2.08 5.29 -2.38 -0.01 2.07 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.51 6.36 -2.39 -0.02 1.49 16 38 H 0.03 1.61 6.15 -2.39 -0.01 1.59 16 39 H -0.01 -0.60 7.31 -2.39 -0.02 -0.62 16 40 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 41 H 0.12 3.35 4.53 -2.39 -0.01 3.34 16 42 H 0.12 3.03 4.08 -2.39 -0.01 3.02 16 43 H 0.14 2.40 6.04 -2.91 -0.02 2.39 16 44 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 45 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 46 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 47 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 49 H 0.04 1.37 7.53 -2.39 -0.02 1.36 16 Total: -1.00 -79.68 369.84 6.76 -72.91 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.96 Total: 19.29 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.24 Total: -11.49 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.08 Total: -82.37 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.39 Total: -45.46 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -79.68 6.76 -72.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615926604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.622 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds